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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 36175

FusionGeneSummary for SSR1_DMD

check button Fusion gene summary
Fusion gene informationFusion gene name: SSR1_DMD
Fusion gene ID: 36175
HgeneTgene
Gene symbol

SSR1

DMD

Gene ID

6745

1756

Gene namesignal sequence receptor subunit 1dystrophin
SynonymsTRAPABMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85
Cytomap

6p24.3

Xp21.2-p21.1

Type of geneprotein-codingprotein-coding
Descriptiontranslocon-associated protein subunit alphaSSR alpha subunitSSR-alphaTRAP alphasignal sequence receptor subunit alphasignal sequence receptor, alphatranslocon-associated protein alpha subunitdystrophin
Modification date2018052320180522
UniProtAcc

P43307

P11532

Ensembl transtripts involved in fusion geneENST00000488834, ENST00000474597, 
ENST00000244763, ENST00000397511, 
ENST00000534851, ENST00000489567, 
ENST00000479365, ENST00000462112, 
ENST00000378707, ENST00000359836, 
ENST00000541735, ENST00000343523, 
ENST00000378677, ENST00000357033, 
ENST00000474231, ENST00000378723, 
ENST00000378702, ENST00000361471, 
ENST00000378680, ENST00000288447, 
ENST00000445312, 
Fusion gene scores* DoF score10 X 11 X 4=44016 X 18 X 7=2016
# samples 1118
** MAII scorelog2(11/440*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(18/2016*10)=-3.48542682717024
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SSR1 [Title/Abstract] AND DMD [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneDMD

GO:0043043

peptide biosynthetic process

16000376


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVGBMTCGA-06-2569-01ASSR1chr6

7310150

-DMDchrX

32328393

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-intronENST00000488834ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5UTR-intronENST00000488834ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000474597ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000244763ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000397511ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000534851ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000489567ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000479365ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000378707SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000359836SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000541735SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000343523SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000378677SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000357033SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000474231SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000378723SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000378702SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000361471SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000378680SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000288447SSR1chr6

7310150

-DMDchrX

32328393

-
5CDS-intronENST00000462112ENST00000445312SSR1chr6

7310150

-DMDchrX

32328393

-

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FusionProtFeatures for SSR1_DMD


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SSR1

P43307

DMD

P11532


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for SSR1_DMD


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for SSR1_DMD


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
SSR1DKC1, UTP14A, EEF1A1, PTN, HSPA13, HDGF, ELAVL1, CUL3, CAND1, FBXO6, ACAD9, FLOT2, CCT2, ABCC2, SFXN1, ILF3, FKBP8, HNRNPM, TCP1, CCT5, ATP6V1C1, CCT4, SRSF1, PSAP, HM13, MDC1, SERPINA1, EDEM1, HSPA5, MYC, ODC1, SERPINF2, ILK, HUWE1, RPS6KB2, NTRK1, ATP5C1, CYC1, DDOST, PHB, ATAD3A, ATAD3B, ATP5L, ATP6V0D1, LMAN1, MAGT1, COX2, NDUFA9, NDUFB8, PHB2, RPN1, SSR3, TECR, TMX1, VDAC3, SSR4, UQCRC2, MED23, TCTN3, TMEM216, EZH2, SORT1, SEC61B, LTN1, ERBB3, ESRRB, DUSP23, ERGIC3, EDEM3DMDDTNA, KCNJ12, KCNJ4, SNTA1, SNTB2, SNTB1, DAG1, ACTA1, MAP3K5, TERF1, TERF2, DISC1, TRAF3IP1, ARRB1, NFX1, MARK2, APP, NEDD4, PTRF, AHNAK, ALB, NOS1, CDC25A, DTNB, CTNNAL1, HAUS1, LPAR6, CTNNA1, XPO1, NUPL1, KIF15, GAN, MCM2, TENC1, TNS1, TNS3, SNTG2, LONRF3, HAUS4, UTRN, OSBPL1A, LRRC8E, KIF23, SIRT2, TRIM41, IFIT5, WDR54, MPP6, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for SSR1_DMD


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SSR1_DMD


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneDMDC0013264Muscular Dystrophy, Duchenne16CTD_human;ORPHANET;UNIPROT
TgeneDMDC0026850Muscular Dystrophy4CTD_human;HPO
TgeneDMDC3668940Dmd-Associated Dilated Cardiomyopathy4CTD_human;UNIPROT
TgeneDMDC0878544Cardiomyopathies3CTD_human;HPO
TgeneDMDC0006663Calcinosis1CTD_human
TgeneDMDC0007193Cardiomyopathy, Dilated1CTD_human;HPO
TgeneDMDC0018800Cardiomegaly1CTD_human
TgeneDMDC0023269leiomyosarcoma1CTD_human
TgeneDMDC0026851Muscular Dystrophy, Animal1CTD_human
TgeneDMDC0027540Necrosis1CTD_human
TgeneDMDC0027626Neoplasm Invasiveness1CTD_human
TgeneDMDC0027627Neoplasm Metastasis1CTD_human
TgeneDMDC0032460Polycystic Ovary Syndrome1CTD_human
TgeneDMDC0038220Status Epilepticus1CTD_human
TgeneDMDC0151786Muscle Weakness1CTD_human;HPO
TgeneDMDC0206656Rhabdomyosarcoma, Embryonal1CTD_human
TgeneDMDC0238198Gastrointestinal Stromal Tumors1CTD_human
TgeneDMDC0242973Ventricular Dysfunction1CTD_human
TgeneDMDC0917713Becker Muscular Dystrophy1ORPHANET;UNIPROT