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Fusion gene ID: 3565 |
FusionGeneSummary for ATXN1L_CSF2RB |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ATXN1L_CSF2RB | Fusion gene ID: 3565 | Hgene | Tgene | Gene symbol | ATXN1L | CSF2RB | Gene ID | 342371 | 1439 |
| Gene name | ataxin 1 like | colony stimulating factor 2 receptor beta common subunit | |
| Synonyms | BOAT|BOAT1 | CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR | |
| Cytomap | 16q22.2 | 22q12.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | ataxin-1-likebrother of ATXN1brother of ataxin-1 | cytokine receptor common subunit betaGM-CSF/IL-3/IL-5 receptor common beta subunitGM-CSF/IL-3/IL-5 receptor common beta-chainbeta common cytokine receptorbeta-GM-CSF receptorcolony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrop | |
| Modification date | 20180519 | 20180522 | |
| UniProtAcc | P0C7T5 | P32927 | |
| Ensembl transtripts involved in fusion gene | ENST00000427980, ENST00000569119, | ENST00000403662, ENST00000262825, ENST00000406230, ENST00000536485, | |
| Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 2 X 2 X 1=4 |
| # samples | 2 | 2 | |
| ** MAII score | log2(2/4*10)=2.32192809488736 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: ATXN1L [Title/Abstract] AND CSF2RB [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BF884753 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000427980 | ENST00000403662 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-3CDS | ENST00000427980 | ENST00000262825 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-3CDS | ENST00000427980 | ENST00000406230 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-intron | ENST00000427980 | ENST00000536485 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-3CDS | ENST00000569119 | ENST00000403662 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-3CDS | ENST00000569119 | ENST00000262825 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-3CDS | ENST00000569119 | ENST00000406230 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
| intron-intron | ENST00000569119 | ENST00000536485 | ATXN1L | chr16 | 71898951 | + | CSF2RB | chr22 | 37319388 | - |
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FusionProtFeatures for ATXN1L_CSF2RB |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ATXN1L | CSF2RB |
| Chromatin-binding factor that repress Notch signaling inthe absence of Notch intracellular domain by acting as a CBF1corepressor. Binds to the HEY promoter and might assist, alongwith NCOR2, RBPJ-mediated repression (PubMed:21475249). Cansuppress ATXN1 cytotoxicity in spinocerebellar ataxia type 1(SCA1). In concert with CIC and ATXN1, involved in braindevelopment (By similarity). {ECO:0000250|UniProtKB:P0C7T6,ECO:0000269|PubMed:21475249}. | High affinity receptor for interleukin-3, interleukin-5and granulocyte-macrophage colony-stimulating factor. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ATXN1L_CSF2RB |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ATXN1L_CSF2RB |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ATXN1L_CSF2RB |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | CSF2RB | P32927 | DB00020 | Sargramostim | Cytokine receptor common subunit beta | biotech | approved|investigational |
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RelatedDiseases for ATXN1L_CSF2RB |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | ATXN1L | C0087012 | Ataxia, Spinocerebellar | 1 | CTD_human |
| Tgene | CSF2RB | C0036341 | Schizophrenia | 3 | PSYGENET |
| Tgene | CSF2RB | C0033975 | Psychotic Disorders | 1 | PSYGENET |
| Tgene | CSF2RB | C0041696 | Unipolar Depression | 1 | PSYGENET |
| Tgene | CSF2RB | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
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