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Fusion gene ID: 35467 |
FusionGeneSummary for SOX6_GALNT18 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SOX6_GALNT18 | Fusion gene ID: 35467 | Hgene | Tgene | Gene symbol | SOX6 | GALNT18 | Gene ID | 55553 | 374378 |
Gene name | SRY-box 6 | polypeptide N-acetylgalactosaminyltransferase 18 | |
Synonyms | HSSOX6|SOXD | GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 | |
Cytomap | 11p15.2 | 11p15.4 | |
Type of gene | protein-coding | protein-coding | |
Description | transcription factor SOX-6SRY (sex determining region Y)-box 6SRY-box containing gene 6 | polypeptide N-acetylgalactosaminyltransferase 18GalNAc-transferase 18UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 4UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15UDP-N-acetyl-alpha-D-galacto | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P35712 | Q6P9A2 | |
Ensembl transtripts involved in fusion gene | ENST00000316399, ENST00000396356, ENST00000352083, ENST00000528252, ENST00000527619, ENST00000528429, ENST00000533658, | ENST00000227756, ENST00000526064, | |
Fusion gene scores | * DoF score | 10 X 9 X 6=540 | 3 X 3 X 3=27 |
# samples | 13 | 3 | |
** MAII score | log2(13/540*10)=-2.05444778402238 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SOX6 [Title/Abstract] AND GALNT18 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SOX6 | GO:0032332 | positive regulation of chondrocyte differentiation | 21401405 |
Hgene | SOX6 | GO:0061036 | positive regulation of cartilage development | 21401405 |
Hgene | SOX6 | GO:0071560 | cellular response to transforming growth factor beta stimulus | 21401405 |
Hgene | SOX6 | GO:2000741 | positive regulation of mesenchymal stem cell differentiation | 21401405 |
Tgene | GALNT18 | GO:0006493 | protein O-linked glycosylation | 22186971 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-AR-A24Q-01A | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000316399 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
5CDS-intron | ENST00000316399 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
In-frame | ENST00000396356 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
5CDS-intron | ENST00000396356 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
In-frame | ENST00000352083 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
5CDS-intron | ENST00000352083 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
Frame-shift | ENST00000528252 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
5CDS-intron | ENST00000528252 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
In-frame | ENST00000527619 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
5CDS-intron | ENST00000527619 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
Frame-shift | ENST00000528429 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
5CDS-intron | ENST00000528429 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
intron-3CDS | ENST00000533658 | ENST00000227756 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
intron-intron | ENST00000533658 | ENST00000526064 | SOX6 | chr11 | 16339992 | - | GALNT18 | chr11 | 11400811 | - |
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FusionProtFeatures for SOX6_GALNT18 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
SOX6 | GALNT18 |
Transcriptional activator. Binds specifically to the DNAsequence 5'-AACAAT-3'. Plays a key role in several developmentalprocesses, including neurogenesis and skeleton formation. | Catalyzes the initial reaction in O-linkedoligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on theprotein receptor. {ECO:0000269|PubMed:22186971}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >GALNT18 | chr11:16339992 | chr11:11400811 | ENST00000227756 | - | 2 | 11 | 469_599 | 198 | 608 | Domain | Ricin B-type lectin |
Tgene | >GALNT18 | chr11:16339992 | chr11:11400811 | ENST00000227756 | - | 2 | 11 | 324_385 | 198 | 608 | Region | Note=Catalytic subdomain B |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000316399 | - | 2 | 15 | 184_262 | 148 | 809 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000352083 | - | 3 | 16 | 184_262 | 148 | 829 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000396356 | - | 3 | 16 | 184_262 | 148 | 809 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000527619 | - | 3 | 15 | 184_262 | 151 | 805 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528252 | - | 3 | 15 | 184_262 | 148 | 802 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528429 | - | 3 | 16 | 184_262 | 148 | 829 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000316399 | - | 2 | 15 | 219_261 | 148 | 809 | Compositional bias | Note=Gln-rich |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000316399 | - | 2 | 15 | 280_285 | 148 | 809 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000316399 | - | 2 | 15 | 313_317 | 148 | 809 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000352083 | - | 3 | 16 | 219_261 | 148 | 829 | Compositional bias | Note=Gln-rich |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000352083 | - | 3 | 16 | 280_285 | 148 | 829 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000352083 | - | 3 | 16 | 313_317 | 148 | 829 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000396356 | - | 3 | 16 | 219_261 | 148 | 809 | Compositional bias | Note=Gln-rich |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000396356 | - | 3 | 16 | 280_285 | 148 | 809 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000396356 | - | 3 | 16 | 313_317 | 148 | 809 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000527619 | - | 3 | 15 | 219_261 | 151 | 805 | Compositional bias | Note=Gln-rich |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000527619 | - | 3 | 15 | 280_285 | 151 | 805 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000527619 | - | 3 | 15 | 313_317 | 151 | 805 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528252 | - | 3 | 15 | 219_261 | 148 | 802 | Compositional bias | Note=Gln-rich |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528252 | - | 3 | 15 | 280_285 | 148 | 802 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528252 | - | 3 | 15 | 313_317 | 148 | 802 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528429 | - | 3 | 16 | 219_261 | 148 | 829 | Compositional bias | Note=Gln-rich |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528429 | - | 3 | 16 | 280_285 | 148 | 829 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528429 | - | 3 | 16 | 313_317 | 148 | 829 | Compositional bias | Note=Poly-Ala |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000316399 | - | 2 | 15 | 621_689 | 148 | 809 | DNA binding | HMG box |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000352083 | - | 3 | 16 | 621_689 | 148 | 829 | DNA binding | HMG box |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000396356 | - | 3 | 16 | 621_689 | 148 | 809 | DNA binding | HMG box |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000527619 | - | 3 | 15 | 621_689 | 151 | 805 | DNA binding | HMG box |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528252 | - | 3 | 15 | 621_689 | 148 | 802 | DNA binding | HMG box |
Hgene | >SOX6 | chr11:16339992 | chr11:11400811 | ENST00000528429 | - | 3 | 16 | 621_689 | 148 | 829 | DNA binding | HMG box |
Tgene | GALNT18 | chr11:16339992 | chr11:11400811 | ENST00000227756 | - | 2 | 11 | 153_267 | 198 | 608 | Region | Note=Catalytic subdomain A |
Tgene | GALNT18 | chr11:16339992 | chr11:11400811 | ENST00000227756 | - | 2 | 11 | 1_12 | 198 | 608 | Topological domain | Cytoplasmic |
Tgene | GALNT18 | chr11:16339992 | chr11:11400811 | ENST00000227756 | - | 2 | 11 | 36_607 | 198 | 608 | Topological domain | Lumenal |
Tgene | GALNT18 | chr11:16339992 | chr11:11400811 | ENST00000227756 | - | 2 | 11 | 13_35 | 198 | 608 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
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FusionGeneSequence for SOX6_GALNT18 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SOX6_ENST00000316399_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_558aa MSSKQATSPFACAADGEDAMTQDLTSREKEEGSDQHVASHLPLHPIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMESENNKLCSLY SFRNTSTSPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEEELKEKLTEYVDKVNSQKPGFIKVVRHSKQEG LIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRIISPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLEN STAPIRSPALIGCFIVDRQYFQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTEDLTAHVRRNALRVAEVWM DEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTFRWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCLDQGPDTENVPIMYICHG MTPQNVYYTSSQQIHVGILSPTVDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQGGPIQNRKSKRCLELQENSDLEFGFQLVLQK >In-frame_SOX6_ENST00000396356_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_558aa MSSKQATSPFACAADGEDAMTQDLTSREKEEGSDQHVASHLPLHPIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMESENNKLCSLY SFRNTSTSPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEEELKEKLTEYVDKVNSQKPGFIKVVRHSKQEG LIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRIISPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLEN STAPIRSPALIGCFIVDRQYFQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTEDLTAHVRRNALRVAEVWM DEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTFRWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCLDQGPDTENVPIMYICHG MTPQNVYYTSSQQIHVGILSPTVDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQGGPIQNRKSKRCLELQENSDLEFGFQLVLQK >In-frame_SOX6_ENST00000352083_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_558aa MSSKQATSPFACAADGEDAMTQDLTSREKEEGSDQHVASHLPLHPIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMESENNKLCSLY SFRNTSTSPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEEELKEKLTEYVDKVNSQKPGFIKVVRHSKQEG LIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRIISPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLEN STAPIRSPALIGCFIVDRQYFQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTEDLTAHVRRNALRVAEVWM DEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTFRWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCLDQGPDTENVPIMYICHG MTPQNVYYTSSQQIHVGILSPTVDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQGGPIQNRKSKRCLELQENSDLEFGFQLVLQK >In-frame_SOX6_ENST00000527619_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_561aa MGRMSSKQATSPFACAADGEDAMTQDLTSREKEEGSDQHVASHLPLHPIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMESENNKLC SLYSFRNTSTSPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEEELKEKLTEYVDKVNSQKPGFIKVVRHSK QEGLIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRIISPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWK LENSTAPIRSPALIGCFIVDRQYFQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTEDLTAHVRRNALRVAE VWMDEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTFRWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCLDQGPDTENVPIMYI CHGMTPQNVYYTSSQQIHVGILSPTVDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQGGPIQNRKSKRCLELQENSDLEFGFQLV |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SOX6_ENST00000316399_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_1674nt ATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCAAGGGAAAAGGAA GAGGGCAGTGATCAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTACCAACACTTGTC AGTACCATTCAACAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTATGTTCCCTATAT TCCTTCCGAAATACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACTTTTGGAACCCCA GAGCGCCGCAAAGGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAACAAGAGGAGGAA CTGAAGGAGAAGCTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGCAAGCAGGAAGGC CTCATCCGCTCCAGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTCAATGTGGGCTGG GCTGAACCTGTACTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGACAACTTTGAGATA GAAGAGTACCCGCTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGGAAGCTGGAGAAC TCCACAGCGCCAATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTGCTGGACGAAGGC ATGGAAGTCTACGGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCCTGCTCACGGATT GCCCACATTGAGCGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCTGAAGTCTGGATG GATGAATTTAAAAGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACTGCAAGGAAGGCT CTCAGGAAACAGCTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGACATCATTGCCTAT GGAGTGCTGCAGAATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTACATCTGCCATGGG ATGACGCCTCAGAACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGATGACAACCGATGC CTGGTGGACGTCAACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAGTTCTCTCAGGGA GGACCCATCCAGAACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTGGTGTTGCAGAAG >In-frame_SOX6_ENST00000396356_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_1674nt ATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCAAGGGAAAAGGAA GAGGGCAGTGATCAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTACCAACACTTGTC AGTACCATTCAACAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTATGTTCCCTATAT TCCTTCCGAAATACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACTTTTGGAACCCCA GAGCGCCGCAAAGGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAACAAGAGGAGGAA CTGAAGGAGAAGCTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGCAAGCAGGAAGGC CTCATCCGCTCCAGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTCAATGTGGGCTGG GCTGAACCTGTACTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGACAACTTTGAGATA GAAGAGTACCCGCTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGGAAGCTGGAGAAC TCCACAGCGCCAATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTGCTGGACGAAGGC ATGGAAGTCTACGGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCCTGCTCACGGATT GCCCACATTGAGCGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCTGAAGTCTGGATG GATGAATTTAAAAGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACTGCAAGGAAGGCT CTCAGGAAACAGCTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGACATCATTGCCTAT GGAGTGCTGCAGAATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTACATCTGCCATGGG ATGACGCCTCAGAACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGATGACAACCGATGC CTGGTGGACGTCAACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAGTTCTCTCAGGGA GGACCCATCCAGAACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTGGTGTTGCAGAAG >In-frame_SOX6_ENST00000352083_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_1674nt ATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCAAGGGAAAAGGAA GAGGGCAGTGATCAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTACCAACACTTGTC AGTACCATTCAACAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTATGTTCCCTATAT TCCTTCCGAAATACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACTTTTGGAACCCCA GAGCGCCGCAAAGGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAACAAGAGGAGGAA CTGAAGGAGAAGCTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGCAAGCAGGAAGGC CTCATCCGCTCCAGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTCAATGTGGGCTGG GCTGAACCTGTACTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGACAACTTTGAGATA GAAGAGTACCCGCTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGGAAGCTGGAGAAC TCCACAGCGCCAATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTGCTGGACGAAGGC ATGGAAGTCTACGGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCCTGCTCACGGATT GCCCACATTGAGCGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCTGAAGTCTGGATG GATGAATTTAAAAGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACTGCAAGGAAGGCT CTCAGGAAACAGCTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGACATCATTGCCTAT GGAGTGCTGCAGAATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTACATCTGCCATGGG ATGACGCCTCAGAACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGATGACAACCGATGC CTGGTGGACGTCAACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAGTTCTCTCAGGGA GGACCCATCCAGAACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTGGTGTTGCAGAAG >In-frame_SOX6_ENST00000527619_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_1683nt ATGGGAAGAATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCAAGG GAAAAGGAAGAGGGCAGTGATCAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTACCA ACACTTGTCAGTACCATTCAACAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTATGT TCCCTATATTCCTTCCGAAATACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACTTTT GGAACCCCAGAGCGCCGCAAAGGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAACAA GAGGAGGAACTGAAGGAGAAGCTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGCAAG CAGGAAGGCCTCATCCGCTCCAGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTCAAT GTGGGCTGGGCTGAACCTGTACTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGACAAC TTTGAGATAGAAGAGTACCCGCTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGGAAG CTGGAGAACTCCACAGCGCCAATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTGCTG GACGAAGGCATGGAAGTCTACGGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCCTGC TCACGGATTGCCCACATTGAGCGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCTGAA GTCTGGATGGATGAATTTAAAAGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACTGCA AGGAAGGCTCTCAGGAAACAGCTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGACATC ATTGCCTATGGAGTGCTGCAGAATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTACATC TGCCATGGGATGACGCCTCAGAACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGATGAC AACCGATGCCTGGTGGACGTCAACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAGTTC TCTCAGGGAGGACCCATCCAGAACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTGGTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SOX6_ENST00000316399_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_1963nt CTGTTTTTTTTCTGCAGAAGAATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGAT TTAACCTCAAGGGAAAAGGAAGAGGGCAGTGATCAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCT GAGGAGCTACCAACACTTGTCAGTACCATTCAACAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAAT AATAAGTTATGTTCCCTATATTCCTTCCGAAATACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACC AGTGTTACTTTTGGAACCCCAGAGCGCCGCAAAGGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACT CGGACTGAACAAGAGGAGGAACTGAAGGAGAAGCTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTG CGTCACAGCAAGCAGGAAGGCCTCATCCGCTCCAGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCAC GTGGAGTTCAATGTGGGCTGGGCTGAACCTGTACTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATC AAATATGACAACTTTGAGATAGAAGAGTACCCGCTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAG GCCTGGTGGAAGCTGGAGAACTCCACAGCGCCAATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAG ATCGGCCTGCTGGACGAAGGCATGGAAGTCTACGGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAG GTCCTGCCCTGCTCACGGATTGCCCACATTGAGCGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTC AGGGTGGCTGAAGTCTGGATGGATGAATTTAAAAGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGG GACATCACTGCAAGGAAGGCTCTCAGGAAACAGCTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATG TACTCCGACATCATTGCCTATGGAGTGCTGCAGAATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCC ATCATGTACATCTGCCATGGGATGACGCCTCAGAACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTG GATGATGATGACAACCGATGCCTGGTGGACGTCAACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTT CACTGGCAGTTCTCTCAGGGAGGACCCATCCAGAACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGC TTCCAGCTGGTGTTGCAGAAGTGCTCGGGCCAGCACTGGAGCATCACCAACGTCCTGAGGAGCCTCGCGTCCTGACCCACCGGGGCCACT TCCGGCTGCCTCTTTGCTACTGTGTAGCACCTGCTGCAACGTTGCCTGCTGTCCACGTGGGGTTGTTTGGAGTCTGGGGAACCAGGTTAG TGGGCCCCCAAGAAGAGCTTTTTATTTCCTATTCAATTTTCATGGAGTTTATAGAAAGATGCTGATTGGTAGGTGATGGTATGATATCAA >In-frame_SOX6_ENST00000396356_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_2020nt GTCACTTTCATGAATTCAAAGGCAATTTACCAGTGATTTCTGGGTGCTGGGGCTGATATTTTTTGTGCATATTTAAGAATGTCTTCCAAG CAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCAAGGGAAAAGGAAGAGGGCAGTGAT CAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTACCAACACTTGTCAGTACCATTCAA CAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTATGTTCCCTATATTCCTTCCGAAAT ACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACTTTTGGAACCCCAGAGCGCCGCAAA GGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAACAAGAGGAGGAACTGAAGGAGAAG CTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGCAAGCAGGAAGGCCTCATCCGCTCC AGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTCAATGTGGGCTGGGCTGAACCTGTA CTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGACAACTTTGAGATAGAAGAGTACCCG CTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGGAAGCTGGAGAACTCCACAGCGCCA ATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTGCTGGACGAAGGCATGGAAGTCTAC GGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCCTGCTCACGGATTGCCCACATTGAG CGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCTGAAGTCTGGATGGATGAATTTAAA AGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACTGCAAGGAAGGCTCTCAGGAAACAG CTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGACATCATTGCCTATGGAGTGCTGCAG AATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTACATCTGCCATGGGATGACGCCTCAG AACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGATGACAACCGATGCCTGGTGGACGTC AACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAGTTCTCTCAGGGAGGACCCATCCAG AACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTGGTGTTGCAGAAGTGCTCGGGCCAG CACTGGAGCATCACCAACGTCCTGAGGAGCCTCGCGTCCTGACCCACCGGGGCCACTTCCGGCTGCCTCTTTGCTACTGTGTAGCACCTG CTGCAACGTTGCCTGCTGTCCACGTGGGGTTGTTTGGAGTCTGGGGAACCAGGTTAGTGGGCCCCCAAGAAGAGCTTTTTATTTCCTATT CAATTTTCATGGAGTTTATAGAAAGATGCTGATTGGTAGGTGATGGTATGATATCAAACTATTTTGCAGTTGTAAATAGGGGACAGATGG >In-frame_SOX6_ENST00000352083_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_2020nt GTCACTTTCATGAATTCAAAGGCAATTTACCAGTGATTTCTGGGTGCTGGGGCTGATATTTTTTGTGCATATTTAAGAATGTCTTCCAAG CAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCAAGGGAAAAGGAAGAGGGCAGTGAT CAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTACCAACACTTGTCAGTACCATTCAA CAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTATGTTCCCTATATTCCTTCCGAAAT ACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACTTTTGGAACCCCAGAGCGCCGCAAA GGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAACAAGAGGAGGAACTGAAGGAGAAG CTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGCAAGCAGGAAGGCCTCATCCGCTCC AGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTCAATGTGGGCTGGGCTGAACCTGTA CTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGACAACTTTGAGATAGAAGAGTACCCG CTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGGAAGCTGGAGAACTCCACAGCGCCA ATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTGCTGGACGAAGGCATGGAAGTCTAC GGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCCTGCTCACGGATTGCCCACATTGAG CGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCTGAAGTCTGGATGGATGAATTTAAA AGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACTGCAAGGAAGGCTCTCAGGAAACAG CTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGACATCATTGCCTATGGAGTGCTGCAG AATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTACATCTGCCATGGGATGACGCCTCAG AACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGATGACAACCGATGCCTGGTGGACGTC AACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAGTTCTCTCAGGGAGGACCCATCCAG AACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTGGTGTTGCAGAAGTGCTCGGGCCAG CACTGGAGCATCACCAACGTCCTGAGGAGCCTCGCGTCCTGACCCACCGGGGCCACTTCCGGCTGCCTCTTTGCTACTGTGTAGCACCTG CTGCAACGTTGCCTGCTGTCCACGTGGGGTTGTTTGGAGTCTGGGGAACCAGGTTAGTGGGCCCCCAAGAAGAGCTTTTTATTTCCTATT CAATTTTCATGGAGTTTATAGAAAGATGCTGATTGGTAGGTGATGGTATGATATCAAACTATTTTGCAGTTGTAAATAGGGGACAGATGG >In-frame_SOX6_ENST00000527619_chr11_16339992_-_GALNT18_ENST00000227756_chr11_11400811_-_2134nt GGGATAGGAAAGATGAAAGGTCATGGTGAGCTTCAAGGACATGAAAGGTTGTTGTCTCATGTAACAATAGTAGATTGTTTTTTTTCCTAA TATTTCTAGCCAGCCCCTAAGTCAGGTGATGGAACAAATACCTACAGTTTAGTCAGGTGAAACAGGAGTGGGTGGAGGAAGGAAAGAAGA AAAATGGGAAGAATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTGCAGCTGATGGAGAGGATGCAATGACCCAGGATTTAACCTCA AGGGAAAAGGAAGAGGGCAGTGATCAACATGTGGCCTCCCATCTGCCTCTGCACCCCATAATGCACAACAAACCTCACTCTGAGGAGCTA CCAACACTTGTCAGTACCATTCAACAAGATGCTGACTGGGACAGCGTTCTGTCATCTCAGCAAAGAATGGAATCAGAGAATAATAAGTTA TGTTCCCTATATTCCTTCCGAAATACCTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGACCGTGAGATAATGACCAGTGTTACT TTTGGAACCCCAGAGCGCCGCAAAGGGAGTCTTGCCGATGTGGTGGACACACTGAAACAGAAGAAGCTTGAGGAAATGACTCGGACTGAA CAAGAGGAGGAACTGAAGGAGAAGCTGACCGAATATGTGGACAAGGTGAACAGCCAGAAGCCAGGCTTCATCAAAGTCGTGCGTCACAGC AAGCAGGAAGGCCTCATCCGCTCCAGGGTCAGTGGCTGGAGGGCGGCCACTGCCCCTGTGGTGGCACTCTTTGATGCCCACGTGGAGTTC AATGTGGGCTGGGCTGAACCTGTACTCACCCGCATCAAGGAGAACCGGAAGCGGATCATCTCGCCATCCTTTGATAACATCAAATATGAC AACTTTGAGATAGAAGAGTACCCGCTGGCTGCCCAGGGCTTTGACTGGGAGCTGTGGTGCCGCTACCTAAATCCCCCCAAGGCCTGGTGG AAGCTGGAGAACTCCACAGCGCCAATCAGGAGCCCTGCCCTCATTGGCTGCTTCATTGTGGACCGGCAGTACTTCCAGGAGATCGGCCTG CTGGACGAAGGCATGGAAGTCTACGGGGGCGAGAATGTGGAGCTTGGGATCAGGGTGTGGCAGTGTGGCGGGAGTGTGGAGGTCCTGCCC TGCTCACGGATTGCCCACATTGAGCGAGCCCACAAGCCCTACACAGAGGACCTCACCGCCCATGTCCGCAGGAACGCTCTCAGGGTGGCT GAAGTCTGGATGGATGAATTTAAAAGCCACGTCTACATGGCATGGAACATACCGCAGGAGGACTCAGGAATTGACATTGGGGACATCACT GCAAGGAAGGCTCTCAGGAAACAGCTGCAGTGCAAGACCTTCCGGTGGTACCTGGTCAGCGTGTACCCAGAGATGAGGATGTACTCCGAC ATCATTGCCTATGGAGTGCTGCAGAATTCTCTGAAGACTGATTTGTGTCTTGACCAGGGGCCAGATACAGAGAATGTCCCCATCATGTAC ATCTGCCATGGGATGACGCCTCAGAACGTGTACTACACGAGCAGTCAGCAGATCCATGTGGGCATTCTGAGCCCCACCGTGGATGATGAT GACAACCGATGCCTGGTGGACGTCAACAGCCGGCCCCGGCTCATCGAATGCAGCTACGCCAAAGCCAAGAGGATGAAGCTTCACTGGCAG TTCTCTCAGGGAGGACCCATCCAGAACCGCAAGTCTAAGCGCTGTCTGGAGCTGCAGGAGAATAGCGACCTGGAGTTCGGCTTCCAGCTG GTGTTGCAGAAGTGCTCGGGCCAGCACTGGAGCATCACCAACGTCCTGAGGAGCCTCGCGTCCTGACCCACCGGGGCCACTTCCGGCTGC CTCTTTGCTACTGTGTAGCACCTGCTGCAACGTTGCCTGCTGTCCACGTGGGGTTGTTTGGAGTCTGGGGAACCAGGTTAGTGGGCCCCC AAGAAGAGCTTTTTATTTCCTATTCAATTTTCATGGAGTTTATAGAAAGATGCTGATTGGTAGGTGATGGTATGATATCAAACTATTTTG |
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FusionGenePPI for SOX6_GALNT18 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SOX6 | CENPK, CTBP2, CTNNB1, HDAC1, SOX2, TRIP12, POMGNT1, ZNF184, TAF4, UBE2I, SOX5 | GALNT18 | CEP250, TAZ, IDS, PLAUR, TMEM25, PTPRK, LYZL2, OS9, ST8SIA4, SLAMF1, AVP, LYZL1, TDGF1, PTCH1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SOX6_GALNT18 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SOX6_GALNT18 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SOX6 | C0036341 | Schizophrenia | 1 | PSYGENET |