|
Fusion gene ID: 34181 |
FusionGeneSummary for SLC25A13_LUC7L2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SLC25A13_LUC7L2 | Fusion gene ID: 34181 | Hgene | Tgene | Gene symbol | SLC25A13 | LUC7L2 | Gene ID | 10165 | 51631 |
Gene name | solute carrier family 25 member 13 | LUC7 like 2, pre-mRNA splicing factor | |
Synonyms | ARALAR2|CITRIN|CTLN2 | CGI-59|CGI-74|LUC7B2 | |
Cytomap | 7q21.3 | 7q34 | |
Type of gene | protein-coding | protein-coding | |
Description | calcium-binding mitochondrial carrier protein Aralar2mitochondrial aspartate glutamate carrier 2solute carrier family 25 (aspartate/glutamate carrier), member 13 | putative RNA-binding protein Luc7-like 2LUC7-like 2 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9UJS0 | ||
Ensembl transtripts involved in fusion gene | ENST00000265631, ENST00000416240, ENST00000542654, ENST00000494085, | ENST00000541515, | |
Fusion gene scores | * DoF score | 9 X 7 X 8=504 | 8 X 9 X 4=288 |
# samples | 8 | 11 | |
** MAII score | log2(8/504*10)=-2.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/288*10)=-1.38856528791765 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SLC25A13 [Title/Abstract] AND LUC7L2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SLC25A13 | GO:0006754 | ATP biosynthetic process | 12851387 |
Hgene | SLC25A13 | GO:0015810 | aspartate transmembrane transport | 11566871 |
Hgene | SLC25A13 | GO:0015813 | L-glutamate transmembrane transport | 11566871 |
Hgene | SLC25A13 | GO:0043490 | malate-aspartate shuttle | 11566871 |
Hgene | SLC25A13 | GO:0045333 | cellular respiration | 12851387 |
Hgene | SLC25A13 | GO:0051592 | response to calcium ion | 11566871 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | STAD | TCGA-CG-4477-01A | SLC25A13 | chr7 | 95926210 | - | LUC7L2 | chr7 | 139030247 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000265631 | ENST00000541515 | SLC25A13 | chr7 | 95926210 | - | LUC7L2 | chr7 | 139030247 | + |
In-frame | ENST00000416240 | ENST00000541515 | SLC25A13 | chr7 | 95926210 | - | LUC7L2 | chr7 | 139030247 | + |
5UTR-3CDS | ENST00000542654 | ENST00000541515 | SLC25A13 | chr7 | 95926210 | - | LUC7L2 | chr7 | 139030247 | + |
intron-3CDS | ENST00000494085 | ENST00000541515 | SLC25A13 | chr7 | 95926210 | - | LUC7L2 | chr7 | 139030247 | + |
Top |
FusionProtFeatures for SLC25A13_LUC7L2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
SLC25A13 | LUC7L2 |
Mitochondrial and calcium-binding carrier that catalyzesthe calcium-dependent exchange of cytoplasmic glutamate withmitochondrial aspartate across the mitochondrial inner membrane(PubMed:11566871, PubMed:25410934). May have a function in theurea cycle (PubMed:11566871). {ECO:0000269|PubMed:11566871,ECO:0000269|PubMed:25410934}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 100_111 | 23 | 676 | Calcium binding | Note=2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 171_182 | 23 | 676 | Calcium binding | Note=3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 66_77 | 23 | 676 | Calcium binding | 1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 100_111 | 23 | 677 | Calcium binding | Note=2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 171_182 | 23 | 677 | Calcium binding | Note=3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 66_77 | 23 | 677 | Calcium binding | 1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 125_157 | 23 | 676 | Domain | EF-hand 3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 158_193 | 23 | 676 | Domain | EF-hand 4 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 51_86 | 23 | 676 | Domain | EF-hand 1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 87_122 | 23 | 676 | Domain | EF-hand 2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 125_157 | 23 | 677 | Domain | EF-hand 3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 158_193 | 23 | 677 | Domain | EF-hand 4 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 51_86 | 23 | 677 | Domain | EF-hand 1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 87_122 | 23 | 677 | Domain | EF-hand 2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 296_311 | 23 | 676 | Region | Linker loop domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 2_295 | 23 | 676 | Region | N-terminal domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 321_612 | 23 | 676 | Region | Carrier domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 613_675 | 23 | 676 | Region | C-terminal domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 296_311 | 23 | 677 | Region | Linker loop domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 2_295 | 23 | 677 | Region | N-terminal domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 321_612 | 23 | 677 | Region | Carrier domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 613_675 | 23 | 677 | Region | C-terminal domain |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 326_418 | 23 | 676 | Repeat | Solcar 1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 426_510 | 23 | 676 | Repeat | Solcar 2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 518_606 | 23 | 676 | Repeat | Solcar 3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 326_418 | 23 | 677 | Repeat | Solcar 1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 426_510 | 23 | 677 | Repeat | Solcar 2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 518_606 | 23 | 677 | Repeat | Solcar 3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 332_349 | 23 | 676 | Transmembrane | Helical%3B Name%3D1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 393_412 | 23 | 676 | Transmembrane | Helical%3B Name%3D2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 436_449 | 23 | 676 | Transmembrane | Helical%3B Name%3D3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 485_504 | 23 | 676 | Transmembrane | Helical%3B Name%3D4 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 524_541 | 23 | 676 | Transmembrane | Helical%3B Name%3D5 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000265631 | - | 2 | 18 | 581_600 | 23 | 676 | Transmembrane | Helical%3B Name%3D6 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 332_349 | 23 | 677 | Transmembrane | Helical%3B Name%3D1 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 393_412 | 23 | 677 | Transmembrane | Helical%3B Name%3D2 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 436_449 | 23 | 677 | Transmembrane | Helical%3B Name%3D3 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 485_504 | 23 | 677 | Transmembrane | Helical%3B Name%3D4 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 524_541 | 23 | 677 | Transmembrane | Helical%3B Name%3D5 |
Hgene | >SLC25A13 | chr7:95926210 | chr7:139030247 | ENST00000416240 | - | 2 | 18 | 581_600 | 23 | 677 | Transmembrane | Helical%3B Name%3D6 |
Top |
FusionGeneSequence for SLC25A13_LUC7L2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SLC25A13_ENST00000265631_chr7_95926210_-_LUC7L2_ENST00000541515_chr7_139030247_+_436aa MAAAKVALTKRADPAELRTIFLKVTSEKLCRAQHELHFQAATYLCLLRSIRKHVALHQEFHGKGDTTRQRIKFSDDRVCKSHLLNCCPHD VLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLL AKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEE LKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQ >In-frame_SLC25A13_ENST00000416240_chr7_95926210_-_LUC7L2_ENST00000541515_chr7_139030247_+_436aa MAAAKVALTKRADPAELRTIFLKVTSEKLCRAQHELHFQAATYLCLLRSIRKHVALHQEFHGKGDTTRQRIKFSDDRVCKSHLLNCCPHD VLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLL AKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEE LKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQ |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SLC25A13_ENST00000265631_chr7_95926210_-_LUC7L2_ENST00000541515_chr7_139030247_+_1308nt ATGGCGGCCGCCAAGGTGGCTTTAACCAAGAGAGCAGATCCAGCTGAGCTTAGAACAATATTTTTGAAGGTCACCAGTGAAAAGTTGTGC AGAGCCCAACATGAGCTTCATTTCCAAGCTGCCACCTATCTCTGCCTCCTGCGTAGCATCCGGAAACATGTGGCCCTACATCAGGAATTT CATGGCAAGGGAGATACAACTCGTCAACGAATCAAATTCAGTGATGACAGAGTATGCAAGAGTCACCTTCTCAACTGTTGTCCTCATGAT GTCCTTTCTGGAACTAGAATGGATCTTGGAGAATGTCTGAAAGTCCATGACCTGGCTTTAAGAGCGGATTATGAAATTGCATCCAAAGAA CAAGATTTTTTCTTTGAACTTGATGCCATGGATCATCTGCAGTCATTCATTGCAGATTGTGATCGTAGAACAGAAGTGGCCAAGAAAAGA TTAGCAGAAACTCAAGAAGAGATTAGTGCTGAAGTAGCAGCAAAGGCAGAACGTGTTCATGAGTTAAATGAAGAAATTGGTAAATTGTTA GCCAAGGTGGAACAACTAGGAGCTGAAGGGAATGTGGAGGAATCCCAGAAAGTAATGGATGAAGTAGAGAAAGCACGGGCAAAGAAAAGA GAAGCAGAGGAAGTTTATCGGAATTCTATGCCAGCTTCCAGTTTTCAGCAGCAGAAACTTCGAGTCTGTGAAGTCTGCTCTGCCTATTTA GGACTTCATGATAATGACAGACGACTGGCTGATCATTTTGGGGGTAAACTGCACCTGGGATTTATTGAAATAAGAGAGAAGCTTGAAGAA TTAAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAAAGGGAGAAG CTGAGGAGGTCCCGATCACACAGCAAGAATCCAAAAAGATCCAGGTCCAGAGAGCATCGCAGACATCGATCTCGCTCCATGTCACGTGAA CGCAAGAGGAGAACTCGATCCAAATCTCGGGAGAAACGCCATCGCCACAGGTCCCGCTCCAGCAGCCGTAGCCGCAGCCGTAGCCACCAG AGAAGTCGGCACAGTTCTAGAGATAGGAGCAGAGAACGATCCAAGAGGAGATCCTCAAAAGAAAGATTCAGAGACCAAGACTTAGCATCA TGTGACAGAGACAGGAGTTCAAGAGACAGATCACCTCGTGACAGAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAGA >In-frame_SLC25A13_ENST00000416240_chr7_95926210_-_LUC7L2_ENST00000541515_chr7_139030247_+_1308nt ATGGCGGCCGCCAAGGTGGCTTTAACCAAGAGAGCAGATCCAGCTGAGCTTAGAACAATATTTTTGAAGGTCACCAGTGAAAAGTTGTGC AGAGCCCAACATGAGCTTCATTTCCAAGCTGCCACCTATCTCTGCCTCCTGCGTAGCATCCGGAAACATGTGGCCCTACATCAGGAATTT CATGGCAAGGGAGATACAACTCGTCAACGAATCAAATTCAGTGATGACAGAGTATGCAAGAGTCACCTTCTCAACTGTTGTCCTCATGAT GTCCTTTCTGGAACTAGAATGGATCTTGGAGAATGTCTGAAAGTCCATGACCTGGCTTTAAGAGCGGATTATGAAATTGCATCCAAAGAA CAAGATTTTTTCTTTGAACTTGATGCCATGGATCATCTGCAGTCATTCATTGCAGATTGTGATCGTAGAACAGAAGTGGCCAAGAAAAGA TTAGCAGAAACTCAAGAAGAGATTAGTGCTGAAGTAGCAGCAAAGGCAGAACGTGTTCATGAGTTAAATGAAGAAATTGGTAAATTGTTA GCCAAGGTGGAACAACTAGGAGCTGAAGGGAATGTGGAGGAATCCCAGAAAGTAATGGATGAAGTAGAGAAAGCACGGGCAAAGAAAAGA GAAGCAGAGGAAGTTTATCGGAATTCTATGCCAGCTTCCAGTTTTCAGCAGCAGAAACTTCGAGTCTGTGAAGTCTGCTCTGCCTATTTA GGACTTCATGATAATGACAGACGACTGGCTGATCATTTTGGGGGTAAACTGCACCTGGGATTTATTGAAATAAGAGAGAAGCTTGAAGAA TTAAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAAAGGGAGAAG CTGAGGAGGTCCCGATCACACAGCAAGAATCCAAAAAGATCCAGGTCCAGAGAGCATCGCAGACATCGATCTCGCTCCATGTCACGTGAA CGCAAGAGGAGAACTCGATCCAAATCTCGGGAGAAACGCCATCGCCACAGGTCCCGCTCCAGCAGCCGTAGCCGCAGCCGTAGCCACCAG AGAAGTCGGCACAGTTCTAGAGATAGGAGCAGAGAACGATCCAAGAGGAGATCCTCAAAAGAAAGATTCAGAGACCAAGACTTAGCATCA TGTGACAGAGACAGGAGTTCAAGAGACAGATCACCTCGTGACAGAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAGA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SLC25A13_ENST00000265631_chr7_95926210_-_LUC7L2_ENST00000541515_chr7_139030247_+_1704nt GGCCAGGAACGCACGCTGCCTGGCCGTATCGCCGCCCCCACCGCCGCCGCCGCCGGGACTAGAAGTGAGCCGCCCGGGTCCCAAACGCCA GCCAGCCAGTCAGTGGGTCCCGCAGTCGCCCGCAACCGGGGCGAATCATGGCGGCCGCCAAGGTGGCTTTAACCAAGAGAGCAGATCCAG CTGAGCTTAGAACAATATTTTTGAAGGTCACCAGTGAAAAGTTGTGCAGAGCCCAACATGAGCTTCATTTCCAAGCTGCCACCTATCTCT GCCTCCTGCGTAGCATCCGGAAACATGTGGCCCTACATCAGGAATTTCATGGCAAGGGAGATACAACTCGTCAACGAATCAAATTCAGTG ATGACAGAGTATGCAAGAGTCACCTTCTCAACTGTTGTCCTCATGATGTCCTTTCTGGAACTAGAATGGATCTTGGAGAATGTCTGAAAG TCCATGACCTGGCTTTAAGAGCGGATTATGAAATTGCATCCAAAGAACAAGATTTTTTCTTTGAACTTGATGCCATGGATCATCTGCAGT CATTCATTGCAGATTGTGATCGTAGAACAGAAGTGGCCAAGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAAGTAGCAGCAA AGGCAGAACGTGTTCATGAGTTAAATGAAGAAATTGGTAAATTGTTAGCCAAGGTGGAACAACTAGGAGCTGAAGGGAATGTGGAGGAAT CCCAGAAAGTAATGGATGAAGTAGAGAAAGCACGGGCAAAGAAAAGAGAAGCAGAGGAAGTTTATCGGAATTCTATGCCAGCTTCCAGTT TTCAGCAGCAGAAACTTCGAGTCTGTGAAGTCTGCTCTGCCTATTTAGGACTTCATGATAATGACAGACGACTGGCTGATCATTTTGGGG GTAAACTGCACCTGGGATTTATTGAAATAAGAGAGAAGCTTGAAGAATTAAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAAACCAGG AACGGCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAAAGGGAGAAGCTGAGGAGGTCCCGATCACACAGCAAGAATCCAAAAAGATCCA GGTCCAGAGAGCATCGCAGACATCGATCTCGCTCCATGTCACGTGAACGCAAGAGGAGAACTCGATCCAAATCTCGGGAGAAACGCCATC GCCACAGGTCCCGCTCCAGCAGCCGTAGCCGCAGCCGTAGCCACCAGAGAAGTCGGCACAGTTCTAGAGATAGGAGCAGAGAACGATCCA AGAGGAGATCCTCAAAAGAAAGATTCAGAGACCAAGACTTAGCATCATGTGACAGAGACAGGAGTTCAAGAGACAGATCACCTCGTGACA GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACAGGAGGAGCTCTGAAGAGCGCGAAGCAGGGGAGA TCTAACTAGCTGTGTACATTTCTTCAGTCCTTAAGCTTCCTACGGAGTTACGTACTATTGTTTAGTTCACAGCTGTTCAGGGTGACAGTG AGCAGATCCAGACACCAGATCCAGCTAGGCTAGATGTACAGTATCTAACTTGATCTGAACTGAACCTGTTTTCCTTGATGATGCCTAAAA >In-frame_SLC25A13_ENST00000416240_chr7_95926210_-_LUC7L2_ENST00000541515_chr7_139030247_+_1758nt AATGGGCGGGCAGCATCCACATGACCCGCGCCGGCGGGAGGGCGTGGGGAGGCAGGCCAGGAACGCACGCTGCCTGGCCGTATCGCCGCC CCCACCGCCGCCGCCGCCGGGACTAGAAGTGAGCCGCCCGGGTCCCAAACGCCAGCCAGCCAGTCAGTGGGTCCCGCAGTCGCCCGCAAC CGGGGCGAATCATGGCGGCCGCCAAGGTGGCTTTAACCAAGAGAGCAGATCCAGCTGAGCTTAGAACAATATTTTTGAAGGTCACCAGTG AAAAGTTGTGCAGAGCCCAACATGAGCTTCATTTCCAAGCTGCCACCTATCTCTGCCTCCTGCGTAGCATCCGGAAACATGTGGCCCTAC ATCAGGAATTTCATGGCAAGGGAGATACAACTCGTCAACGAATCAAATTCAGTGATGACAGAGTATGCAAGAGTCACCTTCTCAACTGTT GTCCTCATGATGTCCTTTCTGGAACTAGAATGGATCTTGGAGAATGTCTGAAAGTCCATGACCTGGCTTTAAGAGCGGATTATGAAATTG CATCCAAAGAACAAGATTTTTTCTTTGAACTTGATGCCATGGATCATCTGCAGTCATTCATTGCAGATTGTGATCGTAGAACAGAAGTGG CCAAGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAAGTAGCAGCAAAGGCAGAACGTGTTCATGAGTTAAATGAAGAAATTG GTAAATTGTTAGCCAAGGTGGAACAACTAGGAGCTGAAGGGAATGTGGAGGAATCCCAGAAAGTAATGGATGAAGTAGAGAAAGCACGGG CAAAGAAAAGAGAAGCAGAGGAAGTTTATCGGAATTCTATGCCAGCTTCCAGTTTTCAGCAGCAGAAACTTCGAGTCTGTGAAGTCTGCT CTGCCTATTTAGGACTTCATGATAATGACAGACGACTGGCTGATCATTTTGGGGGTAAACTGCACCTGGGATTTATTGAAATAAGAGAGA AGCTTGAAGAATTAAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAGAAG AAAGGGAGAAGCTGAGGAGGTCCCGATCACACAGCAAGAATCCAAAAAGATCCAGGTCCAGAGAGCATCGCAGACATCGATCTCGCTCCA TGTCACGTGAACGCAAGAGGAGAACTCGATCCAAATCTCGGGAGAAACGCCATCGCCACAGGTCCCGCTCCAGCAGCCGTAGCCGCAGCC GTAGCCACCAGAGAAGTCGGCACAGTTCTAGAGATAGGAGCAGAGAACGATCCAAGAGGAGATCCTCAAAAGAAAGATTCAGAGACCAAG ACTTAGCATCATGTGACAGAGACAGGAGTTCAAGAGACAGATCACCTCGTGACAGAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTG CTAATGGCAGATCAGAAGACAGGAGGAGCTCTGAAGAGCGCGAAGCAGGGGAGATCTAACTAGCTGTGTACATTTCTTCAGTCCTTAAGC TTCCTACGGAGTTACGTACTATTGTTTAGTTCACAGCTGTTCAGGGTGACAGTGAGCAGATCCAGACACCAGATCCAGCTAGGCTAGATG TACAGTATCTAACTTGATCTGAACTGAACCTGTTTTCCTTGATGATGCCTAAAACTACATCCATAGTTTCTGGTGAACCTGTAATACAGT |
Top |
FusionGenePPI for SLC25A13_LUC7L2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SLC25A13 | USP50, BRE, BABAM1, SLX1B, UBC, MYC, ICT1, AGO4, SIRT7, MRPL46, ALB, ATF2, GRB2, CLN3, CLN5, ADRB2, FBXO6, PARK2, ASB8, CCDC8, EGFR, AATK, ARAF, IKBKB, ILK, IRAK1, LIMK2, SIK2, PPT1, NTRK1, ELAVL1, IMMT, CRK, XRCC3, NEIL3, SKI, MCM2, NF2, OTUB1, ZNF746, SLC25A12, CYLD, DLST, PDHA1, SOAT1, VDAC1, TRIM25 | LUC7L2 | RNPS1, YWHAG, YWHAQ, PTCD3, LUC7L2, PEA15, NKAP, SSFA2, SVIL, KLHL20, ALB, ATRX, LINC00341, NAT9, NDUFA4L2, LPL, UNC119, MAN2A2, MAP1LC3B, FAM173A, NAP1L5, NASP, NUTF2, OFD1, SAT1, ZCCHC10, CDK5RAP2, CCDC53, FXR1, CHD3, KIAA1377, PTN, NSF, ULK2, RRP1B, MEPCE, IKBKG, NEDD4, RBM39, NOP56, NDEL1, EXOC1, GSK3B, GADD45G, AIMP2, PDPK1, CDC37, CDK4, SETDB1, PIK3R3, JMJD6, ELAVL1, CUL3, COPS5, CAND1, HAP1, APP, RPL19, RPL15, RPL18A, RPL7A, RPS4X, SNRPD2, RPLP0P6, BARD1, PAXIP1, CD81, SRPK2, SRPK1, TARDBP, CARS, HSPA4L, ARFIP1, ATP6V1C1, PBDC1, IVNS1ABP, MAN2B1, STAT3, SHMT2, STAU1, HUWE1, NFYA, SRSF6, SRSF7, APPBP2, EZH2, SUZ12, RNF2, EAF1, TRA2A, ZRANB2, LUC7L, CSNK2A2, LARP7, ZC3H18, BCLAF1, THRAP3, PRPF4B, CCDC9, ACIN1, C17orf85, C1QBP, PABPC4, GPATCH8, U2AF2, PAIP1, UBE2O, RBM22, PNN, LARP1, LARP1B, SRSF1, SNW1, CLASRP, PAIP2B, SRRT, CSNK2A1, CCDC12, LUC7L3, MOV10, CDC40, DDX46, SF3A1, ZC3H14, CPSF6, SNRNP27, CLK3, IK, CASC3, FAM98A, FTL, SNRNP70, MKRN2, SCAF11, MKRN1, TRA2B, SRSF8, SRSF12, SRSF10, SREK1, CLK2, HNRNPR, DDX5, PABPC1, PRPF6, PRPF8, RBM8A, RPL22, SNRPD3, SRSF11, TIA1, SF3B3, SNRNP200, SNRPD1, SNRPE, SYNCRIP, U2AF1, SFN, NTRK1, CNTRL, OTUB1, RC3H1, CRBN, FTH1, PPIL4, ISY1, SRRM2, INO80B, RPAP3, FOXA1, TRIM25, UHRF2 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for SLC25A13_LUC7L2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for SLC25A13_LUC7L2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SLC25A13 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | SLC25A13 | C1853942 | CITRULLINEMIA, TYPE II, NEONATAL-ONSET | 1 | CTD_human;ORPHANET;UNIPROT |
Hgene | SLC25A13 | C1863844 | Adult-onset citrullinemia type 2 | 1 | CTD_human;ORPHANET |