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Fusion gene ID: 34040 |
FusionGeneSummary for SLC12A7_RASGEF1C |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SLC12A7_RASGEF1C | Fusion gene ID: 34040 | Hgene | Tgene | Gene symbol | SLC12A7 | RASGEF1C | Gene ID | 10723 | 255426 |
| Gene name | solute carrier family 12 member 7 | RasGEF domain family member 1C | |
| Synonyms | KCC4 | - | |
| Cytomap | 5p15.33 | 5q35.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | solute carrier family 12 member 7K-Cl cotransporter 4SUCO/SLC12A7 fusionelectroneutral potassium-chloride cotransporter 4potassium/chloride transporter KCC4solute carrier family 12 (potassium/chloride transporter), member 7solute carrier family 12 ( | ras-GEF domain-containing family member 1C | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q9Y666 | Q8N431 | |
| Ensembl transtripts involved in fusion gene | ENST00000264930, | ENST00000361132, ENST00000393371, ENST00000522500, ENST00000519883, | |
| Fusion gene scores | * DoF score | 9 X 8 X 5=360 | 5 X 3 X 4=60 |
| # samples | 12 | 5 | |
| ** MAII score | log2(12/360*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: SLC12A7 [Title/Abstract] AND RASGEF1C [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-95-A4VK-01A | SLC12A7 | chr5 | 1111983 | - | RASGEF1C | chr5 | 179565058 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000264930 | ENST00000361132 | SLC12A7 | chr5 | 1111983 | - | RASGEF1C | chr5 | 179565058 | - |
| 5CDS-5UTR | ENST00000264930 | ENST00000393371 | SLC12A7 | chr5 | 1111983 | - | RASGEF1C | chr5 | 179565058 | - |
| 5CDS-intron | ENST00000264930 | ENST00000522500 | SLC12A7 | chr5 | 1111983 | - | RASGEF1C | chr5 | 179565058 | - |
| 5CDS-intron | ENST00000264930 | ENST00000519883 | SLC12A7 | chr5 | 1111983 | - | RASGEF1C | chr5 | 179565058 | - |
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FusionProtFeatures for SLC12A7_RASGEF1C |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SLC12A7 | RASGEF1C |
| Mediates electroneutral potassium-chloride cotransportwhen activated by cell swelling. May mediate K(+) uptake intoDeiters' cells in the cochlea and contribute to K(+) recycling inthe inner ear. Important for the survival of cochlear outer andinner hair cells and the maintenance of the organ of Corti. May berequired for basolateral Cl(-) extrusion in the kidney andcontribute to renal acidification (By similarity). {ECO:0000250,ECO:0000269|PubMed:10913127}. | Guanine nucleotide exchange factor (GEF). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SLC12A7_RASGEF1C |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SLC12A7_RASGEF1C |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| SLC12A7 | POPDC2, LGALS3, LGALS8, LGALS9, PTH1R, LGALS9C, TMEM17, CTDSPL, NRN1, PTGIR, GPR21, ZNRF4, SLC17A2, C5AR2, NMUR2, FSHR, TRIM25 | RASGEF1C | TERF1, TERF2, POT1, S100A7A, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SLC12A7_RASGEF1C |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | SLC12A7 | Q9Y666 | DB00761 | Potassium Chloride | Solute carrier family 12 member 7 | small molecule | approved|withdrawn |
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RelatedDiseases for SLC12A7_RASGEF1C |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | SLC12A7 | C0005695 | Bladder Neoplasm | 1 | CTD_human |
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