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Fusion gene ID: 33095 |
FusionGeneSummary for SEC61G_ZNF446 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SEC61G_ZNF446 | Fusion gene ID: 33095 | Hgene | Tgene | Gene symbol | SEC61G | ZNF446 | Gene ID | 23480 | 55663 |
| Gene name | Sec61 translocon gamma subunit | zinc finger protein 446 | |
| Synonyms | SSS1 | ZKSCAN20|ZSCAN30|ZSCAN52 | |
| Cytomap | 7p11.2 | 19q13.43 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein transport protein Sec61 subunit gammaSec61 gamma subunitprotein transport protein SEC61 gamma subunit | zinc finger protein 446zinc finger protein with KRAB and SCAN domains 20 | |
| Modification date | 20180522 | 20180519 | |
| UniProtAcc | P60059 | Q9NWS9 | |
| Ensembl transtripts involved in fusion gene | ENST00000395535, ENST00000352861, ENST00000415949, ENST00000450622, | ENST00000596341, ENST00000599913, ENST00000594369, ENST00000335841, | |
| Fusion gene scores | * DoF score | 8 X 5 X 3=120 | 1 X 1 X 1=1 |
| # samples | 8 | 1 | |
| ** MAII score | log2(8/120*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: SEC61G [Title/Abstract] AND ZNF446 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | W28426 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000395535 | ENST00000596341 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000395535 | ENST00000599913 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000395535 | ENST00000594369 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-3UTR | ENST00000395535 | ENST00000335841 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| In-frame | ENST00000352861 | ENST00000596341 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000352861 | ENST00000599913 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000352861 | ENST00000594369 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-3UTR | ENST00000352861 | ENST00000335841 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| In-frame | ENST00000415949 | ENST00000596341 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000415949 | ENST00000599913 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000415949 | ENST00000594369 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-3UTR | ENST00000415949 | ENST00000335841 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| In-frame | ENST00000450622 | ENST00000596341 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000450622 | ENST00000599913 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-intron | ENST00000450622 | ENST00000594369 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
| 5CDS-3UTR | ENST00000450622 | ENST00000335841 | SEC61G | chr7 | 54823471 | - | ZNF446 | chr19 | 58991868 | - |
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FusionProtFeatures for SEC61G_ZNF446 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SEC61G | ZNF446 |
| Necessary for protein translocation in the endoplasmicreticulum. {ECO:0000250}. | May be involved in transcriptional regulation. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SEC61G_ZNF446 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_SEC61G_ENST00000352861_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_0aa >In-frame_SEC61G_ENST00000415949_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_162aa MPGGKKVAGGGSSGATPTSAAATAPSGVRRLETSEGTSAQRDEEPEEEGEEDLRDGGVPFFVNRGGLPVDEATWERMWKHVAKIHPDGEK >In-frame_SEC61G_ENST00000450622_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_0aa |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_SEC61G_ENST00000352861_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_0nt >In-frame_SEC61G_ENST00000415949_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_486nt ATGCCAGGGGGGAAGAAGGTGGCTGGGGGTGGCAGCAGCGGTGCCACTCCAACGTCCGCTGCGGCCACCGCCCCCTCTGGGGTCAGGCGT TTGGAGACCAGCGAAGGAACCTCAGCCCAGAGAGATGAGGAGCCAGAAGAGGAAGGGGAAGAGGACCTGCGAGACGGAGGCGTCCCCTTC TTTGTCAACCGGGGTGGGCTACCTGTGGATGAGGCCACCTGGGAAAGGATGTGGAAACACGTGGCCAAGATCCACCCCGATGGAGAGAAG GTGGCGCAACGGATCCGTGGGGCCACAGACCTGCCCAAGGAAGCGTGGCCGGGCGCACGTCGCGCTGCGCTTGCGCACTGAGGTTTCGCG TAAGGAACCAATAGGACGGAGGAGTGGGCGGGCTGTTGGCAGAAACCCGGATTCCGGTTCCGGTGGGCCTCCATCAGCAAGCTCCAGTGC >In-frame_SEC61G_ENST00000450622_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_0nt |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_SEC61G_ENST00000352861_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_292nt GGCAGAAACCCGGATTCCGGTTCCGGTGGGCCTCCATCAGCAAGCTCCAGTGCTACGTGTCCCTGGCATTTTAGGTGTCGGTTGGGTAGG CAGTCATGGATCAGGTAATGCAGTTTGTTGAGCCAAGTCGGCAGTTTGTAAAGGACTCCATTCGGCTGGTTAAAAGATGCACTAAACCTG ATAGAAAAGAATTCCAGAAGATTGCCATGGCAACAGCAATAGGATTTGCTATAATGGGATTCATTGGCTTCTTTGTGAAATTGATCCATA >In-frame_SEC61G_ENST00000415949_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_564nt ATTGCTAAAAGGAAACATGGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCGCGAGGTCAG GAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTGACGGTTTCAGCCATCCGGCGGGGGGTTCCTGGAATGCATCCTT GTGGGAAGCGTGGCCGGGCGCACGTCGCGCTGCGCTTGCGCACTGAGGTTTCGCGTAAGGAACCAATAGGACGGAGGAGTGGGCGGGCTG TTGGCAGAAACCCGGATTCCGGTTCCGGTGGGCCTCCATCAGCAAGCTCCAGTGCTACGTGTCCCTGGCATTTTAGGTGTCGGTTGGGTA GGCAGTCATGGATCAGGTAATGCAGTTTGTTGAGCCAAGTCGGCAGTTTGTAAAGGACTCCATTCGGCTGGTTAAAAGATGCACTAAACC TGATAGAAAAGAATTCCAGAAGATTGCCATGGCAACAGCAATAGGATTTGCTATAATGGGATTCATTGGCTTCTTTGTGAAATTGATCCA >In-frame_SEC61G_ENST00000450622_chr7_54823471_-_ZNF446_ENST00000596341_chr19_58991868_-_348nt GGCATTTTAGGTGTCGGTTGGGTAGGTGAGTTTCTTCCCACCGGTCGGTACGGGCGAACGGGGCGGCCACACCTTTGCGACTCTTGGGGG CAGCGGGCGTGGGCGAGCCGGCGTGTCTCCCCGGGCGGCCGTCGCGGGGCGGGCGGCAGTCATGGATCAGGTAATGCAGTTTGTTGAGCC AAGTCGGCAGTTTGTAAAGGACTCCATTCGGCTGGTTAAAAGATGCACTAAACCTGATAGAAAAGAATTCCAGAAGATTGCCATGGCAAC |
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FusionGenePPI for SEC61G_ZNF446 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SEC61G_ZNF446 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SEC61G_ZNF446 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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