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Fusion gene ID: 33014 |
FusionGeneSummary for SEC16A_FAM195B |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SEC16A_FAM195B | Fusion gene ID: 33014 | Hgene | Tgene | Gene symbol | SEC16A | FAM195B | Gene ID | 9919 | 348262 |
| Gene name | SEC16 homolog A, endoplasmic reticulum export factor | MAPK regulated corepressor interacting protein 1 | |
| Synonyms | KIAA0310|SEC16L|p250 | FAM195B|GRAN2|MCRIP | |
| Cytomap | 9q34.3 | 17q25.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein transport protein Sec16Aprotein SEC16 homolog A | mapk-regulated corepressor-interacting protein 1MAPK-regulated co-repressor interacting protein 1MCRIP1 proteinfamily with sequence similarity 195, member Bgranulin-2protein FAM195B | |
| Modification date | 20180523 | 20180522 | |
| UniProtAcc | O15027 | ||
| Ensembl transtripts involved in fusion gene | ENST00000313050, ENST00000467838, ENST00000371706, ENST00000313084, ENST00000290037, ENST00000431893, ENST00000398335, | ENST00000455127, ENST00000576730, ENST00000572645, ENST00000538396, ENST00000573478, ENST00000574190, ENST00000570507, ENST00000575090, ENST00000576679, ENST00000576431, ENST00000575061, | |
| Fusion gene scores | * DoF score | 7 X 5 X 6=210 | 1 X 1 X 1=1 |
| # samples | 8 | 1 | |
| ** MAII score | log2(8/210*10)=-1.39231742277876 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: SEC16A [Title/Abstract] AND FAM195B [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | SEC16A | GO:0007029 | endoplasmic reticulum organization | 21768384 |
| Tgene | FAM195B | GO:0010717 | regulation of epithelial to mesenchymal transition | 25728771 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | CESC | TCGA-VS-A9UT-01A | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000313050 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000313050 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000313050 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000313050 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000313050 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000467838 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000467838 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000467838 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000467838 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000371706 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000371706 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000371706 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000371706 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000313084 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000313084 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000313084 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000313084 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000290037 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000290037 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000290037 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000290037 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000431893 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000431893 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-intron | ENST00000431893 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| 5CDS-5UTR | ENST00000431893 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000455127 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000576730 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000572645 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000538396 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000573478 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000574190 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000398335 | ENST00000570507 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000398335 | ENST00000575090 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-intron | ENST00000398335 | ENST00000576679 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000576431 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
| intron-5UTR | ENST00000398335 | ENST00000575061 | SEC16A | chr9 | 139366427 | - | FAM195B | chr17 | 79782430 | - |
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FusionProtFeatures for SEC16A_FAM195B |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SEC16A | FAM195B |
| Defines endoplasmic reticulum exit sites (ERES) and isrequired for secretory cargo traffic from the endoplasmicreticulum to the Golgi apparatus. SAR1A-GTP-dependent assembly ofSEC16A on the ER membrane forms an organized scaffold defining anERES. Required for normal transitional endoplasmic reticulum (tER)organization. {ECO:0000269|PubMed:17005010,ECO:0000269|PubMed:17192411}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SEC16A_FAM195B |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SEC16A_FAM195B |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| SEC16A | NFKB2, TERF1, TERF2, SIRT7, TSG101, CUL3, CAND1, SHC1, VCP, IQCB1, TRAF3, USO1, TRAF2, PAN2, SOX2, HDAC6, HDAC8, HDAC11, ANKRD28, LATS1, LATS2, SAV1, FKBP3, KRT18, CSNK1A1, CSNK1E, CEP250, EMD, CCDC8, RNF2, IRAK1, KLK15, AHNAK, HNRNPH3, NTRK1, MED23, CENPJ, XPO1, AP2A1, C4BPA, CAD, CLTA, CLTB, CLTC, DCTN1, DSP, ERF, GAK, GOLGA2, HNRNPA1, HNRNPK, IMPDH1, IMPDH2, HNRNPM, PFDN2, PIK3C2A, PKP2, PRKAR2A, RBM4, ATXN2, SEC13, TRPS1, VCL, ZKSCAN1, CLTCL1, TNK1, HDAC3, FUBP3, P4HA2, MAP7, BAG3, RBM39, NCOR2, SEC24C, CLINT1, PUM1, SMG7, CAPZA2, CDK2, DBN1, MYH9, PPP1CB, PRKAR2B, PICALM, IQGAP1, SYNPO, MAPRE1, TRIM29, LIMA1, GTSE1, MYO19, CDKN2AIPNL, ELMSAN1, ARX, FAM83H, MYO18A, HELZ, SEC24B, RBM14, SEC23B, SEC23A, SEC24A, PPP1R13L, PKP3, BTBD3, SPG20, FAM120A, KANK2, AKAP8L, PLEKHA5, ANKHD1, FAM120C, PIH1D1, WDR33, BMP2K, KIAA1217, EIF4ENIF1, CCAR2, P3H1, CPSF7, FIP1L1, FAM83D, CHD6, PRRC2B, FAM83A, WDR92, HNRNPUL2, FAM83B, CRY2, MCM2, RC3H1, MYO6, EGFR, EYA2, NEFL, XPNPEP3, AIPL1, PDHA1, BRCA1, YAP1, TES | FAM195B | DDX6 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SEC16A_FAM195B |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SEC16A_FAM195B |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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