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Fusion gene ID: 32943 |
FusionGeneSummary for SDCBP_BIRC6 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SDCBP_BIRC6 | Fusion gene ID: 32943 | Hgene | Tgene | Gene symbol | SDCBP | BIRC6 | Gene ID | 6386 | 57448 |
| Gene name | syndecan binding protein | baculoviral IAP repeat containing 6 | |
| Synonyms | MDA-9|MDA9|ST1|SYCL|TACIP18 | APOLLON|BRUCE | |
| Cytomap | 8q12.1 | 2p22.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | syntenin-1melanoma differentiation associated protein-9pro-TGF-alpha cytoplasmic domain-interacting protein 18scaffold protein Pbp1syndecan binding protein (syntenin)syndecan-binding protein 1 | baculoviral IAP repeat-containing protein 6BIR repeat-containing ubiquitin-conjugating enzymeRING-type E3 ubiquitin transferase BIRC6ubiquitin-conjugating BIR-domain enzyme apollon | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | O00560 | Q9NR09 | |
| Ensembl transtripts involved in fusion gene | ENST00000522243, ENST00000422546, ENST00000260130, ENST00000447182, ENST00000413219, ENST00000424270, ENST00000523483, ENST00000520168, ENST00000447267, | ENST00000421745, | |
| Fusion gene scores | * DoF score | 4 X 3 X 2=24 | 17 X 11 X 13=2431 |
| # samples | 4 | 23 | |
| ** MAII score | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(23/2431*10)=-3.40184412708435 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: SDCBP [Title/Abstract] AND BIRC6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | SDCBP | GO:0042327 | positive regulation of phosphorylation | 18256285 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SKCM | TCGA-EE-A29E-06A | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000522243 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| Frame-shift | ENST00000422546 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| In-frame | ENST00000260130 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| intron-3CDS | ENST00000447182 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| intron-3CDS | ENST00000413219 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| intron-3CDS | ENST00000424270 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| Frame-shift | ENST00000523483 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| intron-3CDS | ENST00000520168 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
| intron-3CDS | ENST00000447267 | ENST00000421745 | SDCBP | chr8 | 59495417 | + | BIRC6 | chr2 | 32820101 | + |
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FusionProtFeatures for SDCBP_BIRC6 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SDCBP | BIRC6 |
| Multifunctional adapter protein involved in diversearray of functions including trafficking of transmembraneproteins, neuro and immunomodulation, exosome biogenesis, andtumorigenesis (PubMed:26291527). Positively regulates TGFB1-mediated SMAD2/3 activation and TGFB1-induced epithelial-to-mesenchymal transition (EMT) and cell migration in various celltypes. May increase TGFB1 signaling by enhancing cell-surfaceexpression of TGFR1 by preventing the interaction between TGFR1and CAV1 and subsequent CAV1-dependent internalization anddegradation of TGFR1 (PubMed:25893292). In concert with SDC1/4 andPDCD6IP, regulates exosome biogenesis (PubMed:22660413). Regulatesmigration, growth, proliferation, and cell cycle progression in avariety of cancer types (PubMed:26539120). In adherens junctionsmay function to couple syndecans to cytoskeletal proteins orsignaling components. Seems to couple transcription factor SOX4 tothe IL-5 receptor (IL5RA) (PubMed:11498591). May also play a rolein vesicular trafficking (PubMed:11179419). Seems to be requiredfor the targeting of TGFA to the cell surface in the earlysecretory pathway (PubMed:10230395). {ECO:0000269|PubMed:10230395,ECO:0000269|PubMed:11179419, ECO:0000269|PubMed:11498591,ECO:0000269|PubMed:22660413, ECO:0000269|PubMed:25893292,ECO:0000269|PubMed:26539120, ECO:0000303|PubMed:26291527}. | Anti-apoptotic protein which can regulate cell death bycontrolling caspases and by acting as an E3 ubiquitin-proteinligase. Has an unusual ubiquitin conjugation system in that itcould combine in a single polypeptide, ubiquitin conjugating (E2)with ubiquitin ligase (E3) activity, forming a chimeric E2/E3ubiquitin ligase. Its tragets include CASP9 and DIABLO/SMAC. Actsas an inhibitor of CASP3, CASP7 and CASP9. Important regulator forthe final stages of cytokinesis. Crucial for normal vesicletargeting to the site of abscission, but also for the integrity ofthe midbody and the midbody ring, and its striking ubiquitinmodification. {ECO:0000269|PubMed:14765125,ECO:0000269|PubMed:15200957, ECO:0000269|PubMed:18329369}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SDCBP_BIRC6 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_SDCBP_ENST00000260130_chr8_59495417_+_BIRC6_ENST00000421745_chr2_32820101_+_1030aa MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSIN YMVAPVTGNDVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM PAFIFEHIIKRMAPSIMKSLMDHTIPEVXNSRHHGNVAERLQFPSLATSVLCTXSLPGASEHMLHEDLSILHYGWESYSFIXYLVQISKX LXPYPGFTDVKLSRDLLTFLEXFLYWKPDAFISHCDXDDCYRLSFVXKPVTFLLGNEXCCSYYFSSIAYLHLXHAIIVHLEXLPLIFFLN SVCVCVKCQLRTLVSFHVSIKQCMXVSRDCDDSXILTTFTXYAXTVALTMLSIXTKSQNIIIAAFLKTQNVVLYXPEMYTSPEQFNGTYX AIAXLLSCFXDFLVNTXWKLLSSKSCQCHFXEVNHYMXCKSYYTKQDKLLTPLLFICGLSGIILNFGIXLLRLCNLATLGWSXNIFLITC SFSXLLLANKMIVDTLSXFFSSFWFMSILIKYVXIKLHFSLSKKKLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKLQFDTFEMVSEDED GKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPS SPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYD GNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLD |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_SDCBP_ENST00000260130_chr8_59495417_+_BIRC6_ENST00000421745_chr2_32820101_+_3090nt ATGTCTCTCTATCCATCTCTCGAAGACTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCA ATTTTGTCAGAAGCTTCTGCTCCTATCCCTCACGATGGAAATCTCTATCCCAGACTGTATCCAGAGCTCTCTCAATACATGGGGCTGAGT TTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGGCAGTTGGTAGCAAGACCTTCCAGTATAAAC TATATGGTGGCTCCTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGAT CAAGATGGAAAAATTGGACTCAGGCTTAAATCAATAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAATTCTCCAGCCTCATTGGTT GGTCTGAGATTTGGGGACCAAGTACTTCAGATCAATGGTGAAAACTGTGCAGGATGGAGCTCTGATAAAGCGCACAAGGTGCTCAAACAG GCTTTTGGAGAGAAGATTACCATGACCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGGT TTTATCTTTAAAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAATGGTCTTCTCACGGAACATAACATCTGTGAA ATCAATGGACAGAATGTCATTGGATTGAAGGACTCTCAAATTGCAGACATACTGTCAACATCTGGGACTGTAGTTACTATTACAATCATG CCTGCTTTTATCTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACCATTCCTGAGGTTTAAAAT TCACGGCACCATGGAAATGTAGCTGAACGTCTCCAGTTTCCTTCTTTGGCAACTTCTGTATTATGCACGTGAAGCCTTCCCGGAGCCAGC GAGCATATGCTGCATGAGGACCTTTCTATCTTACATTATGGCTGGGAATCTTACTCTTTCATCTGATACCTTGTTCAGATTTCAAAATAG TTGTAGCCTTATCCTGGTTTTACAGATGTGAAACTTTCAAGAGATTTACTGACTTTCCTAGAATAGTTTCTCTACTGGAAACCTGATGCT TTTATAAGCCATTGTGATTAGGATGACTGTTACAGGCTTAGCTTTGTGTGAAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGT TCATATTACTTTAGTTCTATAGCATACTTGCATCTTTAACATGCTATCATAGTACATTTAGAATGATTGCCTTTGATTTTTTTTTTAAAT TCTGTGTGTGTGTGTGTAAAATGCCAATTAAGAACACTGGTTTCATTCCATGTAAGCATTAAACAGTGTATGTAGGTTTCAAGAGATTGT GATGATTCTTAAATTTTAACTACCTTCACTTAATATGCTTGAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCCAAAATATA ATTATTGCTGCCTTTCTAAAAACCCAAAATGTAGTTCTCTATTAACCTGAAATGTACACTAGCCCAGAACAGTTTAATGGTACTTACTGA GCTATAGCATAGCTGCTTAGTTGTTTTTGAGATTTTTTAGTCAACACATAATGGAAACTTCTTTCTTCTAAAAGTTGCCAGTGCCACTTT TAAGAAGTGAATCACTATATGTGATGTAAAAGTTATTACACTAAACAGGATAAACTTTTGACTCCCCTTTTGTTCATTTGTGGATTAAGT GGTATAATACTTAATTTTGGCATTTGACTCTTAAGATTATGTAACCTAGCTACTTTGGGATGGTCTTAGAATATTTTTCTGATAACTTGT TCCTTTTCCTGACTCCTCCTTGCAAACAAAATGATAGTTGACACTTTATCCTGATTTTTTTCTTCTTTTTGGTTTATGTCTATTCTAATT AAATATGTATAAATAAAGTTACATTTTAGTCTGTCTAAAAAAAAACTGGGTGAATACTCCAAGAAGGCGGCTATGAAACCCAAACCTTTG TCAGTATTAAAGTCACTTGAAGAAAAATATGTGGCTGTTATGAAGAAATTACAGTTTGATACGTTTGAAATGGTTTCTGAAGATGAAGAT GGGAAATTGGGATTTAAAGTAAATTACCACTACATGTCTCAGGTGAAAAATGCTAATGATGCGAACAGTGCTGCCAGAGCTCGCCGCCTT GCCCAGGAAGCTGTGACGCTTTCAACCTCACTGCCTCTGTCTTCATCCTCTAGTGTGTTTGTACGCTGTGATGAGGAGCGACTTGATATC ATGAAGGTTCTAATAACTGGTCCAGCGGACACCCCTTATGCAAATGGCTGCTTTGAGTTTGATGTGTATTTTCCTCAAGATTATCCCAGT TCACCCCCTCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCTTTATAATGATGGCAAGGTTTGTTTAAGC ATCTTAAACACGTGGCATGGAAGACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTGCAAGTGTTGGTGTCTGTCCAGTCCCTT ATATTAGTAGCTGAGCCTTATTTTAATGAACCGGGATATGAACGGTCTAGAGGCACTCCCAGTGGCACACAGAGTTCTCGAGAATATGAT GGAAACATTCGACAAGCAACAGTTAAGTGGGCAATGCTAGAACAAATCAGAAACCCTTCACCATGTTTTAAAGAGGTAATACACAAACAT TTTTACTTGAAAAGAGTTGAGATAATGGCCCAATGTGAGGAGTGGATTGCGGATATCCAGCAGTACAGCAGTGATAAGCGGGTAGGCAGG ACTATGTCTCACCATGCAGCAGCTCTCAAGCGTCACACTGCTCAGCTCCGCGAAGAGTTGCTGAAACTTCCCTGCCCTGAAGGCTTGGAT CCTGACACTGACGATGCCCCAGAGGTGTGCAGAGCCACAACAGGTGCTGAGGAGACTCTAATGCATGATCAGGTTAAACCCAGCAGCAGC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_SDCBP_ENST00000260130_chr8_59495417_+_BIRC6_ENST00000421745_chr2_32820101_+_4235nt GGCTGAAGGCGGGGGCGGTGCCATGACGCGCCTCGGGGGCGGTCCTCGGGCGCGCACCGCTCTCTTACACTCGGGCCTCAGAAGTCCGTG CCAGTGACCGGAGGCGGCGGCGGCGAGCGGTTCCTTGTGGGCTAGAAGAATCCTGCAAAAATGTCTCTCTATCCATCTCTCGAAGACTTG AAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGTCAGAAGCTTCTGCTCCTATCCCT CACGATGGAAATCTCTATCCCAGACTGTATCCAGAGCTCTCTCAATACATGGGGCTGAGTTTAAATGAAGAAGAAATACGTGCAAATGTG GCCGTGGTTTCTGGTGCACCACTTCAGGGGCAGTTGGTAGCAAGACCTTCCAGTATAAACTATATGGTGGCTCCTGTAACTGGTAATGAT GTTGGAATTCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAAAAATTGGACTCAGGCTTAAA TCAATAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAATTCTCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTTCAG ATCAATGGTGAAAACTGTGCAGGATGGAGCTCTGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTACCATGACCATT CGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGGTTTTATCTTTAAAAATGGAAAAATAACATCC ATAGTGAAAGATAGCTCTGCAGCCAGAAATGGTCTTCTCACGGAACATAACATCTGTGAAATCAATGGACAGAATGTCATTGGATTGAAG GACTCTCAAATTGCAGACATACTGTCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGCTTTTATCTTTGAACATATTATTAAG CGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACCATTCCTGAGGTTTAAAATTCACGGCACCATGGAAATGTAGCTGAACGT CTCCAGTTTCCTTCTTTGGCAACTTCTGTATTATGCACGTGAAGCCTTCCCGGAGCCAGCGAGCATATGCTGCATGAGGACCTTTCTATC TTACATTATGGCTGGGAATCTTACTCTTTCATCTGATACCTTGTTCAGATTTCAAAATAGTTGTAGCCTTATCCTGGTTTTACAGATGTG AAACTTTCAAGAGATTTACTGACTTTCCTAGAATAGTTTCTCTACTGGAAACCTGATGCTTTTATAAGCCATTGTGATTAGGATGACTGT TACAGGCTTAGCTTTGTGTGAAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGTTCATATTACTTTAGTTCTATAGCATACTTG CATCTTTAACATGCTATCATAGTACATTTAGAATGATTGCCTTTGATTTTTTTTTTAAATTCTGTGTGTGTGTGTGTAAAATGCCAATTA AGAACACTGGTTTCATTCCATGTAAGCATTAAACAGTGTATGTAGGTTTCAAGAGATTGTGATGATTCTTAAATTTTAACTACCTTCACT TAATATGCTTGAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCCAAAATATAATTATTGCTGCCTTTCTAAAAACCCAAAAT GTAGTTCTCTATTAACCTGAAATGTACACTAGCCCAGAACAGTTTAATGGTACTTACTGAGCTATAGCATAGCTGCTTAGTTGTTTTTGA GATTTTTTAGTCAACACATAATGGAAACTTCTTTCTTCTAAAAGTTGCCAGTGCCACTTTTAAGAAGTGAATCACTATATGTGATGTAAA AGTTATTACACTAAACAGGATAAACTTTTGACTCCCCTTTTGTTCATTTGTGGATTAAGTGGTATAATACTTAATTTTGGCATTTGACTC TTAAGATTATGTAACCTAGCTACTTTGGGATGGTCTTAGAATATTTTTCTGATAACTTGTTCCTTTTCCTGACTCCTCCTTGCAAACAAA ATGATAGTTGACACTTTATCCTGATTTTTTTCTTCTTTTTGGTTTATGTCTATTCTAATTAAATATGTATAAATAAAGTTACATTTTAGT CTGTCTAAAAAAAAACTGGGTGAATACTCCAAGAAGGCGGCTATGAAACCCAAACCTTTGTCAGTATTAAAGTCACTTGAAGAAAAATAT GTGGCTGTTATGAAGAAATTACAGTTTGATACGTTTGAAATGGTTTCTGAAGATGAAGATGGGAAATTGGGATTTAAAGTAAATTACCAC TACATGTCTCAGGTGAAAAATGCTAATGATGCGAACAGTGCTGCCAGAGCTCGCCGCCTTGCCCAGGAAGCTGTGACGCTTTCAACCTCA CTGCCTCTGTCTTCATCCTCTAGTGTGTTTGTACGCTGTGATGAGGAGCGACTTGATATCATGAAGGTTCTAATAACTGGTCCAGCGGAC ACCCCTTATGCAAATGGCTGCTTTGAGTTTGATGTGTATTTTCCTCAAGATTATCCCAGTTCACCCCCTCTTGTGAATCTAGAGACAACT GGTGGTCATAGCGTGCGATTCAATCCAAACCTTTATAATGATGGCAAGGTTTGTTTAAGCATCTTAAACACGTGGCATGGAAGACCAGAA GAGAAGTGGAATCCTCAGACCTCAAGCTTTTTGCAAGTGTTGGTGTCTGTCCAGTCCCTTATATTAGTAGCTGAGCCTTATTTTAATGAA CCGGGATATGAACGGTCTAGAGGCACTCCCAGTGGCACACAGAGTTCTCGAGAATATGATGGAAACATTCGACAAGCAACAGTTAAGTGG GCAATGCTAGAACAAATCAGAAACCCTTCACCATGTTTTAAAGAGGTAATACACAAACATTTTTACTTGAAAAGAGTTGAGATAATGGCC CAATGTGAGGAGTGGATTGCGGATATCCAGCAGTACAGCAGTGATAAGCGGGTAGGCAGGACTATGTCTCACCATGCAGCAGCTCTCAAG CGTCACACTGCTCAGCTCCGCGAAGAGTTGCTGAAACTTCCCTGCCCTGAAGGCTTGGATCCTGACACTGACGATGCCCCAGAGGTGTGC AGAGCCACAACAGGTGCTGAGGAGACTCTAATGCATGATCAGGTTAAACCCAGCAGCAGCAAAGAACTCCCCAGTGACTTCCAGTTATGA GCTGCATTGATGTGGACTTCATAGACACAAAGGCTTCGAAGCACAAGCCAAATATGTCAATATTTGTATGTAAGAAACTAATTATGTAAT AGGTAATGAAACTGAAACTATACTATGCCCTTAAGGAGATCCAGTTTAATTCAAGGTGATCTTTTATTTACCTGTACAGGAGTGTAAACT TTTTTGTGCTTTTATTTTTCAATTGTGAGAACCACTGATTGGTATGTTCAACAAATTTGTGTATACAAAGAAATGGATAAATCACTGCTA TATAAGGGAAACTACCTTAGGAAAGAATGTTTACTGAATGTTTATTTTATTTTATTTTTTTTTTACTATAGAGTGAGGGGTTGTTAACAA AGAATATATATTGGTCATTCTTACAACTACTATTTAAAGTCAGCAACTTTTCACTGAATTTGATAGATTTTATGTTTGGCCATATCTTCA TGCTCACATTTGATTTCTGAAGACCTCCTACATACACTTCAATAAAAGTTAAATGGACATACTCCCTCTTTTTTGATTTACTGGTACATT TTTAAAATAATAAATCTGCCATAAAATGCATTATATCTGGAGACTTGCACTTGTATGGATGAATTTATTACATTCAACATATTTAATTTT ATGCCTTCTAATTCTAAGATGCAGAAAAAAATAAATGAACATGATTTTATTCTATGCCAACATTTGGGCCTCTGAATGTATCTGTTATTT GAATTTAAGTATTTGAAAAGGAATGGTCAATTTGAAAGTCATTCTAAACTGATTTTTTTTTTCTAAAGGGCTCCTTTTTTCCTGGACTAT GTGGTTTTATGACTAAAGTCACATGTATGTATTAAACATTGAGGCTCTGTAGAGGAGAGAGGATGTACCTCTCTGGTGCTGTTACAGTAC ATTCTGTACCTGCCATACAGGCTCATTTTCATGCAAATTCTTCCTAGAGCCAAATAAATAAAGACTTAGGTGAATTAGTATGTCTTGTTT |
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FusionGenePPI for SDCBP_BIRC6 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| SDCBP | GRIK2, GRIK1, ULK1, RAB5A, GRIA1, GRIA2, GRIA3, GRIA4, GRM3, SDC2, EFNB1, IL5RA, SOX4, PTPRJ, SDC1, NF2, TRAF6, UBC, VCAM1, ITGA4, LMNA, HIVEP1, GPR37, TDO2, AES, CBR3, CDA, CDC34, CLK2, CLK3, COX4I1, CRYAA, DCTD, PHC2, ELAVL1, FTH1, FTL, HMGB3, HNRNPC, HOXA1, HPRT1, HSBP1, KCNH1, KRTAP5-9, LGALS2, MAD2L1, PSMC6, PTS, REL, TRIM27, RNH1, RTN1, SET, SRSF7, SIAH1, SMARCA2, TFCP2, TRAF5, UBE2A, ZBTB14, CGGBP1, CADPS, SSNA1, WASL, PSTPIP1, PNMA1, SRSF11, RBM39, PDE4DIP, ABI2, CALCOCO2, IKZF1, CDIPT, TRIM38, ANP32B, PNMA2, SDCCAG3, RUNDC3A, MID2, DMC1, LSM6, KLHL2, PUF60, MAPRE3, TRIM32, NT5C2, MTUS2, LDOC1, TNFAIP8, DAK, OSTF1, GNMT, SULT1B1, MED4, CCDC53, APIP, CUTC, ZCCHC17, MBD3, PRR13, NECAB2, LZTFL1, ROPN1, KCTD9, ZCCHC10, C1orf109, THG1L, FAM118A, ENOX1, CEP55, C11orf57, NAGK, PRPF40A, SEPT3, EIF5A2, TRIM54, HOMEZ, KLHL12, RIC8A, CDCP1, NADK, PYCRL, DCTPP1, FAM118B, CCDC102B, FLAD1, C11orf68, TEKT1, DTNBP1, EIF1AD, PRPF38A, EAF1, ANKRD40, TIFA, REEP6, FOXP2, MRFAP1L1, CMTM5, EDARADD, FAM9B, KCTD6, KHDRBS2, GPATCH11, INO80E, KCTD1, ERICH2, SREK1IP1, CCDC36, KRTAP10-7, KRTAP10-3, NOTCH2NL, BCL2L15, RP9P, CT45A3, CT45A5, ZBTB8A, TMEM239, PDCD6IP, CD63, EZH2, TSPAN3, RARS, IARS, QARS, EPRS, AIMP2, DARS, MARS, TARSL2, AIMP1, EEF1E1, LARS, PPP6R2, ANKRD28, LGALS8, LTBR, WRAP73, UNK, IFI16, GRM7, GRM2, PTEN, HIST1H2BG, EWSR1, CEP170, SCLT1, CNOT1, SAMD1, CDH1, MANSC1, PSME2, RNF11, GPRC5B, PCDHB11, PCDHGB4, FAM8A1, PCDHGB1, C16orf58, TNFRSF10A, RPL28, LITAF, TMEM223 | BIRC6 | RNF41, KIF23, USP8, DIABLO, CASP9, HTRA2, UBC, VAV2, SIRT7, CASP3, CASP7, BIRC6, CASP8, UBE2D1, CSNK2A1, RASSF2, EPS15L1, GBF1, CCNA2, CDC27, ANAPC11, TEX35, PRSS45, RTBDN, C3orf20, WDR4, DFNA5, FAM175B, CA11, FIGF, MOS, HERC2, CHIA, CLEC11A, INTS4P2, TBC1D22A, FAM58A, MCPH1, TP53, UNK, RPGR, KIF22, LLGL2, PLK1, MYH13, SSH3, AGRP, ANGPTL3, UGGT2, AKAP9, DCAF12, FERMT2, PSMC5, MGST3, CCDC22, OSBPL2, ADAMTS4, HEY1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SDCBP_BIRC6 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SDCBP_BIRC6 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | SDCBP | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
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