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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 32801

FusionGeneSummary for SCCPDH_ARAP2

check button Fusion gene summary
Fusion gene informationFusion gene name: SCCPDH_ARAP2
Fusion gene ID: 32801
HgeneTgene
Gene symbol

SCCPDH

ARAP2

Gene ID

51097

116984

Gene namesaccharopine dehydrogenase (putative)ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
SynonymsCGI-49|NET11CENTD1|PARX
Cytomap

1q44

4p14

Type of geneprotein-codingprotein-coding
Descriptionsaccharopine dehydrogenase-like oxidoreductaseprobable saccharopine dehydrogenasearf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2Arf and Rho GAP adapter protein 2centaurin-delta-1
Modification date2018052320180522
UniProtAcc

Q8NBX0

Q8WZ64

Ensembl transtripts involved in fusion geneENST00000366510, ENST00000513032, 
ENST00000303965, 
Fusion gene scores* DoF score5 X 6 X 3=902 X 2 X 2=8
# samples 62
** MAII scorelog2(6/90*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: SCCPDH [Title/Abstract] AND ARAP2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF376184SCCPDHchr1

246927630

+ARAP2chr4

36130998

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000366510ENST00000513032SCCPDHchr1

246927630

+ARAP2chr4

36130998

-
5CDS-intronENST00000366510ENST00000303965SCCPDHchr1

246927630

+ARAP2chr4

36130998

-

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FusionProtFeatures for SCCPDH_ARAP2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SCCPDH

Q8NBX0

ARAP2

Q8WZ64

Phosphatidylinositol 3,4,5-trisphosphate-dependentGTPase-activating protein that modulates actin cytoskeletonremodeling by regulating ARF and RHO family members. Is activatedby phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)binding. Can be activated by phosphatidylinositol 3,4-bisphosphate(PtdIns(3,4,5)P2) binding, albeit with lower efficiency (Bysimilarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for SCCPDH_ARAP2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for SCCPDH_ARAP2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for SCCPDH_ARAP2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SCCPDH_ARAP2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource