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Fusion gene ID: 32774 |
FusionGeneSummary for SCAPER_TSPAN3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SCAPER_TSPAN3 | Fusion gene ID: 32774 | Hgene | Tgene | Gene symbol | SCAPER | TSPAN3 | Gene ID | 49855 | 10099 |
Gene name | S-phase cyclin A associated protein in the ER | tetraspanin 3 | |
Synonyms | MSTP063|ZNF291|Zfp291 | TM4-A|TM4SF8|TSPAN-3 | |
Cytomap | 15q24.3 | 15q24.3 | |
Type of gene | protein-coding | protein-coding | |
Description | S phase cyclin A-associated protein in the endoplasmic reticulumzinc finger protein 291 | tetraspanin-3tetraspan 3tetraspan TM4SFtetraspanin TM4-Atransmembrane 4 superfamily member 8 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q9BY12 | O60637 | |
Ensembl transtripts involved in fusion gene | ENST00000538941, ENST00000563290, ENST00000324767, ENST00000562890, | ENST00000267970, ENST00000346495, ENST00000424443, ENST00000561277, ENST00000559494, ENST00000558745, ENST00000558394, | |
Fusion gene scores | * DoF score | 7 X 6 X 7=294 | 6 X 5 X 4=120 |
# samples | 7 | 7 | |
** MAII score | log2(7/294*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/120*10)=-0.777607578663552 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SCAPER [Title/Abstract] AND TSPAN3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-EE-A29D-06A | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000538941 | ENST00000267970 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5UTR-3CDS | ENST00000538941 | ENST00000346495 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5UTR-intron | ENST00000538941 | ENST00000424443 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5UTR-5UTR | ENST00000538941 | ENST00000561277 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5UTR-intron | ENST00000538941 | ENST00000559494 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5UTR-5UTR | ENST00000538941 | ENST00000558745 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5UTR-5UTR | ENST00000538941 | ENST00000558394 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
Frame-shift | ENST00000563290 | ENST00000267970 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
Frame-shift | ENST00000563290 | ENST00000346495 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-intron | ENST00000563290 | ENST00000424443 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-5UTR | ENST00000563290 | ENST00000561277 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-intron | ENST00000563290 | ENST00000559494 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-5UTR | ENST00000563290 | ENST00000558745 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-5UTR | ENST00000563290 | ENST00000558394 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
In-frame | ENST00000324767 | ENST00000267970 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
In-frame | ENST00000324767 | ENST00000346495 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-intron | ENST00000324767 | ENST00000424443 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-5UTR | ENST00000324767 | ENST00000561277 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-intron | ENST00000324767 | ENST00000559494 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-5UTR | ENST00000324767 | ENST00000558745 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
5CDS-5UTR | ENST00000324767 | ENST00000558394 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-3CDS | ENST00000562890 | ENST00000267970 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-3CDS | ENST00000562890 | ENST00000346495 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-intron | ENST00000562890 | ENST00000424443 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-5UTR | ENST00000562890 | ENST00000561277 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-intron | ENST00000562890 | ENST00000559494 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-5UTR | ENST00000562890 | ENST00000558745 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
intron-5UTR | ENST00000562890 | ENST00000558394 | SCAPER | chr15 | 77134075 | - | TSPAN3 | chr15 | 77348597 | - |
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FusionProtFeatures for SCAPER_TSPAN3 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
SCAPER | TSPAN3 |
CCNA2/CDK2 regulatory protein that transiently maintainsCCNA2 in the cytoplasm. {ECO:0000269|PubMed:17698606}. | Regulates the proliferation and migration ofoligodendrocytes, a process essential for normal myelination andrepair. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SCAPER_TSPAN3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SCAPER_ENST00000324767_chr15_77134075_-_TSPAN3_ENST00000267970_chr15_77348597_-_364aa MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTHKTTKQSTAVDCKITSSTTGDKHFDKSPTKT RHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLI GCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTD WFKETKNQSVPLSCCRETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYELLITGG >In-frame_SCAPER_ENST00000324767_chr15_77134075_-_TSPAN3_ENST00000346495_chr15_77348597_-_339aa MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTHKTTKQSTAVDCKITSSTTGDKHFDKSPTKT RHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLI GCCATIRESRCGLATVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASNCNGS |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SCAPER_ENST00000324767_chr15_77134075_-_TSPAN3_ENST00000267970_chr15_77348597_-_1092nt ATGATGGCTTCATTCCAGCGCTCCAATAGTCATGACAAAGTAAGGAGAATAGTTGCAGAGGAGGGTCGTACAGCAAGAAACCTAATAGCT TGGAGTGTTCCACTAGAAAGCAAAGATGATGATGGAAAACCTAAATGTCAAACTGGTGGAAAATCTAAGAGGACCATTCAAGGCACTCAT AAAACTACTAAACAGAGTACTGCAGTGGACTGTAAAATAACATCGTCTACGACTGGAGATAAACACTTTGATAAAAGTCCCACTAAAACA AGGCACCCTCGGAAAATTGATCTAAGAGCTCGATACTGGGCATTTCTTTTTGATAATCTTCGCCGAGCAGTAGATGAAATCTATGTAACT TGCGAATCAGATCAGAGTGTGGTCGAATGTAAGGGGGCAGCTGGCATTTTATGCTATGTGGGAGCCTATGTCTTCATCACTTATGATGAC TATGACCACTTCTTTGAAGATGTGTACACGCTCATCCCTGCTGTAGTGATCATAGCTGTAGGAGCCCTGCTTTTCATCATTGGGCTAATT GGCTGCTGTGCCACAATCCGGGAAAGTCGCTGTGGACTTGCCACGTTTGTCATCATCCTGCTCTTGGTTTTTGTCACAGAAGTTGTTGTA GTGGTTTTGGGATATGTTTACAGAGCAAAGGTGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACCAAC CCTGATGCTGCTAGCCGGGCTATTGATTATGTACAGAGACAGCTGCATTGTTGTGGAATTCACAACTACTCAGACTGGGAAAATACAGAT TGGTTCAAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACTGCCAGCAATTGTAATGGCAGCCTGGCCCACCCTTCC GACCTCTATGCTGAGGGGTGTGAGGCTCTAGTAGTGAAGAAGCTACAAGAAATCATGATGCATGTGATCTGGGCCGCACTGGCATTTGCA GCTATTCAGCTGCTGGGCATGCTGTGTGCTTGCATCGTGTTGTGCAGAAGGAGTAGAGATCCTGCTTACGAGCTCCTCATCACTGGCGGA >In-frame_SCAPER_ENST00000324767_chr15_77134075_-_TSPAN3_ENST00000346495_chr15_77348597_-_1017nt ATGATGGCTTCATTCCAGCGCTCCAATAGTCATGACAAAGTAAGGAGAATAGTTGCAGAGGAGGGTCGTACAGCAAGAAACCTAATAGCT TGGAGTGTTCCACTAGAAAGCAAAGATGATGATGGAAAACCTAAATGTCAAACTGGTGGAAAATCTAAGAGGACCATTCAAGGCACTCAT AAAACTACTAAACAGAGTACTGCAGTGGACTGTAAAATAACATCGTCTACGACTGGAGATAAACACTTTGATAAAAGTCCCACTAAAACA AGGCACCCTCGGAAAATTGATCTAAGAGCTCGATACTGGGCATTTCTTTTTGATAATCTTCGCCGAGCAGTAGATGAAATCTATGTAACT TGCGAATCAGATCAGAGTGTGGTCGAATGTAAGGGGGCAGCTGGCATTTTATGCTATGTGGGAGCCTATGTCTTCATCACTTATGATGAC TATGACCACTTCTTTGAAGATGTGTACACGCTCATCCCTGCTGTAGTGATCATAGCTGTAGGAGCCCTGCTTTTCATCATTGGGCTAATT GGCTGCTGTGCCACAATCCGGGAAAGTCGCTGTGGACTTGCCACGGTGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACC TACAATGGAACCAACCCTGATGCTGCTAGCCGGGCTATTGATTATGTACAGAGACAGCTGCATTGTTGTGGAATTCACAACTACTCAGAC TGGGAAAATACAGATTGGTTCAAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACTGCCAGCAATTGTAATGGCAGC CTGGCCCACCCTTCCGACCTCTATGCTGAGGGGTGTGAGGCTCTAGTAGTGAAGAAGCTACAAGAAATCATGATGCATGTGATCTGGGCC GCACTGGCATTTGCAGCTATTCAGCTGCTGGGCATGCTGTGTGCTTGCATCGTGTTGTGCAGAAGGAGTAGAGATCCTGCTTACGAGCTC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SCAPER_ENST00000324767_chr15_77134075_-_TSPAN3_ENST00000267970_chr15_77348597_-_3969nt GAGTCATACTCCATGGGTTTATGTGATAAATGATCTTGGCATAGAAGAGAATTTAAAGAATGATGGCTTCATTCCAGCGCTCCAATAGTC ATGACAAAGTAAGGAGAATAGTTGCAGAGGAGGGTCGTACAGCAAGAAACCTAATAGCTTGGAGTGTTCCACTAGAAAGCAAAGATGATG ATGGAAAACCTAAATGTCAAACTGGTGGAAAATCTAAGAGGACCATTCAAGGCACTCATAAAACTACTAAACAGAGTACTGCAGTGGACT GTAAAATAACATCGTCTACGACTGGAGATAAACACTTTGATAAAAGTCCCACTAAAACAAGGCACCCTCGGAAAATTGATCTAAGAGCTC GATACTGGGCATTTCTTTTTGATAATCTTCGCCGAGCAGTAGATGAAATCTATGTAACTTGCGAATCAGATCAGAGTGTGGTCGAATGTA AGGGGGCAGCTGGCATTTTATGCTATGTGGGAGCCTATGTCTTCATCACTTATGATGACTATGACCACTTCTTTGAAGATGTGTACACGC TCATCCCTGCTGTAGTGATCATAGCTGTAGGAGCCCTGCTTTTCATCATTGGGCTAATTGGCTGCTGTGCCACAATCCGGGAAAGTCGCT GTGGACTTGCCACGTTTGTCATCATCCTGCTCTTGGTTTTTGTCACAGAAGTTGTTGTAGTGGTTTTGGGATATGTTTACAGAGCAAAGG TGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACCAACCCTGATGCTGCTAGCCGGGCTATTGATTATG TACAGAGACAGCTGCATTGTTGTGGAATTCACAACTACTCAGACTGGGAAAATACAGATTGGTTCAAAGAAACCAAAAACCAGAGTGTCC CTCTTAGCTGCTGCAGAGAGACTGCCAGCAATTGTAATGGCAGCCTGGCCCACCCTTCCGACCTCTATGCTGAGGGGTGTGAGGCTCTAG TAGTGAAGAAGCTACAAGAAATCATGATGCATGTGATCTGGGCCGCACTGGCATTTGCAGCTATTCAGCTGCTGGGCATGCTGTGTGCTT GCATCGTGTTGTGCAGAAGGAGTAGAGATCCTGCTTACGAGCTCCTCATCACTGGCGGAACCTATGCATAGTTGACAACTCAAGCCTGAG CTTTTTGGTCTTGTTCTGATTTGGAAGGTGAATTGAGCAGGTCTGCTGCTGTTGGCCTCTGGAGTTCATTTAGTTAAAGCACATGTACAC TGGTGTTGGACAGAGCAGCTTGGCTTTTCATGTGCCCACCTACTTACCTACTACCTGCGACTTTCTTTTTCCTTGTTCTAGCTGACTCTT CATGCCCCTAAGATTTTAAGTACGATGGTGAACGTTCTAATTTCAGAACCAATTGCGAGTCATGTAGTGTGGTAGAATTAAAGGAGGACA CGAGCCTGCTTCTGTTACCTCCAAGTGGTAACAGGACTGATGCCGAAATGTCACCAGGTCCTTTCAGTCTTCACAGTGGAGAACTCTTGG CCAAAGGTTTTTGCGGGGAGGAGGAGGAAACCAGCTTTCTGGTTAAGGTTAACACCAGATGGTGCCCCTCATTGGTGTCCTTTTAAAAAA TATTTACTGTAGTCCAATAAGATAGCAGCTGTACAAAATGACTAAAATAGATTGTAGGATCATATGGCGTATATCTTGGTTCATCTTCAA AATCAGAGACTGAGCTTTGAAACTAGTGGTTTTTAATCAAAGTTGGCTTTATAGGAGGAGTATAATGTATGCACTACTGTTTTAAAAGAA TTAGTGTGAGTGTGTTTTTGTATGAATGAGCCCATTCATGGTAAGTCTTAAGCTTGTTGGAAATAATGTACCCATGTAGACTAGCAAAAT AGTATGTAGATGTGATCTCAGTTGTAAATAGAAAAATCTAATTCAATAAACTCTGTATCAGCCCCCAACATATTATTTTTCATTATTTGG GGGATATTTCAGTTCCAGAGCAGCAGTATCATGTTTTCTTTGTTGGTGCTGTCTATAGTTCATCATGGTTTACGTGTGTTTTCGTTATAG CTGTTGCCAGATTCTAAAGGGCTTGATATTCAAAAAACCACAGATGCTTTCAGTCCAGTATATCCTAGAAATATAGAGCTCTACTTTGTG CAATGCACTGGGGATACAGTGGCGATACTGTCCTTGTCTTCAAGGAGTTCGGAGTCCTAGTATAGGAGACATACATAGGAGAAGATAATT TTCACACTGCAGTGGTTGTAGTAATAGAATGGGAGTCCAAAGGGGAGTTCCGGAGAGGTCAGGGGTGACTTCCTGGAGGAGATGCCCAAG CTTGGAGGCTGGATAGGCTTTGTTGAAAGATGGTACACAAGAGTGTGAAACAAAATTGTGTGTGCAGGGAGCTTAAAATACAAGGCTGGG GAAAGAAGTTGGAGAAGCAGGAAAGCCCAGGCCCTCTAGTGTCTTACGGAACATCCTGTGGAGGTGAGAGCTGACTTGTAGGTGGAAGCA GCTCTTTGGAGGTTTGATTTGGAAGGTGAACTGAGAAGAAGGTGGTGATGCAAGCCGGCCGTGCTGAAGCCAGGATGAATTGGTGTGACT GGGCTTCAGTTAGGCTGGCATAGCAGTTGAGAGAGCTTAGCAGTGGGCAGCAGGGCACTGTTGGGGGCGGTGGTGAGCGGTGGATTCTGG CTGTTTGGAGGCAGGACAGTGGTGGAATTCGATCATTGATTGGACGTGGGACAGAGAAGGGAGAAGAGAAGACTCATCTAGGATGAGTCC CAGGTTTCTGGCTCAGTCAACTGGGGAAACAAAGTCACAGAGCTAGGGAGTAGTTAGAGAACACATCTGGGGGTGTGACTCATGGTCAGT TTTGGGCTCGTCAGTTTTGAGATGCCCAAATATCATGCAGATCTGTCCCACCTGAAAATGGAGAAGACACGGGAAAGGAGAGGAGTAAAA ACTAACTCCTTTTCACAAAGTGGAAGTTACCAGAATGTGATTTCAGAGGCCCCGGGGGATTTATCATGTGACTACTGACCCATCCCACCT CTTGCCCCTGCCTGTTGCACAGTGGGCAAGAATGTTTGTGACCTTTCACTACCACCACCTCCCCCGAGCATGGTCCCCCCAGTTTTCAAT ATGAACCATCCTGTGGGTACCCTGTCACAGGCTGGCCCTGAGGTGAGCAATATTTGGACTGTGATGTTGGTTGTTCTCCACTCTTTCTAC AGGACAGAACAGGGCCTCTAGAGTGGGAAATGGCTTTGGGAAATATGCCAAGCAGTAGCCTTGTTCTTCAACTTGCCCAAGAGGATAATT CTCCACACCCTTCCTGTACTCAGTCCTCAGTTTGCCTGGTGAGAGAGCAGCCTCCTCCCGTGTGCTCTGCCAGCTGGACCCAGACTGGCC ATATTACCAGTGAGACCAAAAAGATGGAGGTGGGGAGGTAGCTCTGAGGTCTGGGAAACCATTCCAGCTCCTGCCAGTTTTAACTTGTGT TTAATTCCTGGCACAGTTGTCCTGGAAATGCCTTTTTCTCTTGCCTGGGAACCACTAGAAGGGGATGTTGTCTGTGTTGGCCAGGGCCAT GCAAATTCAACATCTTGTTTCTGCCCTTCCCCCGTGTAGCTGAGGCTAGGTGTTGGCATTACCCAGTGCTTGTTCTTCAGAGAGCAAAAG CACTGCTCGTCATGTCTGAAATTTAGTGAGTGAGCTCACCCACTAGGCTGGTGTTTCCTGCCCGTGGCTGCACATTGGAAGCACCGGGGC ACTTTGAGAACTACAGATGCCTGGGTCCCAGAGCATCTAAGGTGCTCTAGGGTGTGTCCAGGACACAGCCCTGGTTGAGGACCACTGCTA TATTGTATGGCCTCTTTTAAAAAAGTTAATTTTACTTGGAAATGATTTCAAAGCTACAGAAAAGTTGCAAGAATAAAAACTGTACAAATG >In-frame_SCAPER_ENST00000324767_chr15_77134075_-_TSPAN3_ENST00000346495_chr15_77348597_-_1881nt GAGTCATACTCCATGGGTTTATGTGATAAATGATCTTGGCATAGAAGAGAATTTAAAGAATGATGGCTTCATTCCAGCGCTCCAATAGTC ATGACAAAGTAAGGAGAATAGTTGCAGAGGAGGGTCGTACAGCAAGAAACCTAATAGCTTGGAGTGTTCCACTAGAAAGCAAAGATGATG ATGGAAAACCTAAATGTCAAACTGGTGGAAAATCTAAGAGGACCATTCAAGGCACTCATAAAACTACTAAACAGAGTACTGCAGTGGACT GTAAAATAACATCGTCTACGACTGGAGATAAACACTTTGATAAAAGTCCCACTAAAACAAGGCACCCTCGGAAAATTGATCTAAGAGCTC GATACTGGGCATTTCTTTTTGATAATCTTCGCCGAGCAGTAGATGAAATCTATGTAACTTGCGAATCAGATCAGAGTGTGGTCGAATGTA AGGGGGCAGCTGGCATTTTATGCTATGTGGGAGCCTATGTCTTCATCACTTATGATGACTATGACCACTTCTTTGAAGATGTGTACACGC TCATCCCTGCTGTAGTGATCATAGCTGTAGGAGCCCTGCTTTTCATCATTGGGCTAATTGGCTGCTGTGCCACAATCCGGGAAAGTCGCT GTGGACTTGCCACGGTGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACCAACCCTGATGCTGCTAGCC GGGCTATTGATTATGTACAGAGACAGCTGCATTGTTGTGGAATTCACAACTACTCAGACTGGGAAAATACAGATTGGTTCAAAGAAACCA AAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACTGCCAGCAATTGTAATGGCAGCCTGGCCCACCCTTCCGACCTCTATGCTGAGG GGTGTGAGGCTCTAGTAGTGAAGAAGCTACAAGAAATCATGATGCATGTGATCTGGGCCGCACTGGCATTTGCAGCTATTCAGCTGCTGG GCATGCTGTGTGCTTGCATCGTGTTGTGCAGAAGGAGTAGAGATCCTGCTTACGAGCTCCTCATCACTGGCGGAACCTATGCATAGTTGA CAACTCAAGCCTGAGCTTTTTGGTCTTGTTCTGATTTGGAAGGTGAATTGAGCAGGTCTGCTGCTGTTGGCCTCTGGAGTTCATTTAGTT AAAGCACATGTACACTGGTGTTGGACAGAGCAGCTTGGCTTTTCATGTGCCCACCTACTTACCTACTACCTGCGACTTTCTTTTTCCTTG TTCTAGCTGACTCTTCATGCCCCTAAGATTTTAAGTACGATGGTGAACGTTCTAATTTCAGAACCAATTGCGAGTCATGTAGTGTGGTAG AATTAAAGGAGGACACGAGCCTGCTTCTGTTACCTCCAAGTGGTAACAGGACTGATGCCGAAATGTCACCAGGTCCTTTCAGTCTTCACA GTGGAGAACTCTTGGCCAAAGGTTTTTGCGGGGAGGAGGAGGAAACCAGCTTTCTGGTTAAGGTTAACACCAGATGGTGCCCCTCATTGG TGTCCTTTTAAAAAATATTTACTGTAGTCCAATAAGATAGCAGCTGTACAAAATGACTAAAATAGATTGTAGGATCATATGGCGTATATC TTGGTTCATCTTCAAAATCAGAGACTGAGCTTTGAAACTAGTGGTTTTTAATCAAAGTTGGCTTTATAGGAGGAGTATAATGTATGCACT ACTGTTTTAAAAGAATTAGTGTGAGTGTGTTTTTGTATGAATGAGCCCATTCATGGTAAGTCTTAAGCTTGTTGGAAATAATGTACCCAT |
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FusionGenePPI for SCAPER_TSPAN3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SCAPER | CALM1, HECW2, CCNA2, APPL1, MZT1 | TSPAN3 | EWSR1, FAM189B, NDFIP2, NDFIP1, NOTCH3, CDC6, GABARAP, STX6, AGPAT3, SDCBP, CD320, KDSR, EPHA5, EPHA4, MAP1LC3B2, RNF149, CC2D1A, FGFR1, FGFR2, TNFRSF10B, UGCG, GOLGA7, SNX17, ZDHHC9, CSNK1G3, IFNGR1, ACVR1B, RDH14, PI4K2A, CD63, ARL17A, LRP10, RNF13, LPAR1, LRRC8B, SPPL2B, TSPAN2, LGALS9, GPR141, TRHDE, ABCG8, GPR114, TMEM30B, TMEM171, GPM6A, MANSC1, GPR21, TACR1, LGALS9C, EFNB2, LMAN2L, ADIPOR1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SCAPER_TSPAN3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SCAPER_TSPAN3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SCAPER | C3714756 | Intellectual Disability | 1 | CTD_human |