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Fusion gene ID: 31983 |
FusionGeneSummary for RPLP1_SIAH2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RPLP1_SIAH2 | Fusion gene ID: 31983 | Hgene | Tgene | Gene symbol | RPLP1 | SIAH2 | Gene ID | 6176 | 6478 |
| Gene name | ribosomal protein lateral stalk subunit P1 | siah E3 ubiquitin protein ligase 2 | |
| Synonyms | LP1|P1|RPP1 | hSiah2 | |
| Cytomap | 15q23 | 3q25.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | 60S acidic ribosomal protein P1acidic ribosomal phosphoprotein P1large ribosomal subunit protein P1ribosomal protein, large, P1 | E3 ubiquitin-protein ligase SIAH2RING-type E3 ubiquitin transferase SIAH2seven in absentia homolog 2siah-2 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P05386 | O43255 | |
| Ensembl transtripts involved in fusion gene | ENST00000260379, ENST00000357790, ENST00000560274, | ENST00000312960, ENST00000472885, | |
| Fusion gene scores | * DoF score | 5 X 5 X 2=50 | 2 X 2 X 1=4 |
| # samples | 5 | 2 | |
| ** MAII score | log2(5/50*10)=0 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: RPLP1 [Title/Abstract] AND SIAH2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BM768334 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3UTR | ENST00000260379 | ENST00000312960 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
| 3UTR-intron | ENST00000260379 | ENST00000472885 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
| 5CDS-3UTR | ENST00000357790 | ENST00000312960 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
| 5CDS-intron | ENST00000357790 | ENST00000472885 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
| 5CDS-3UTR | ENST00000560274 | ENST00000312960 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
| 5CDS-intron | ENST00000560274 | ENST00000472885 | RPLP1 | chr15 | 69747886 | + | SIAH2 | chr3 | 150459103 | - |
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FusionProtFeatures for RPLP1_SIAH2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RPLP1 | SIAH2 |
| Plays an important role in the elongation step ofprotein synthesis. | E3 ubiquitin-protein ligase that mediates ubiquitinationand subsequent proteasomal degradation of target proteins. E3ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directlytransfers the ubiquitin to targeted substrates. Mediates E3ubiquitin ligase activity either through direct binding tosubstrates or by functioning as the essential RING domain subunitof larger E3 complexes. Triggers the ubiquitin-mediateddegradation of many substrates, including proteins involved intranscription regulation (GPS2, POU2AF1, PML, NCOR1), a cellsurface receptor (DCC), an antiapoptotic protein (BAG1), and aprotein involved in synaptic vesicle function in neurons (SYP).Mediates ubiquitination and proteasomal degradation of DYRK2 inresponse to hypoxia. It is thereby involved in apoptosis, tumorsuppression, cell cycle, transcription and signaling processes.Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SIAH1 does not. Promotesmonoubiquitination of SNCA. {ECO:0000269|PubMed:11483518,ECO:0000269|PubMed:12411493, ECO:0000269|PubMed:19224863,ECO:0000269|PubMed:22878263, ECO:0000269|PubMed:9334332}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RPLP1_SIAH2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RPLP1_SIAH2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RPLP1_SIAH2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPLP1_SIAH2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | SIAH2 | C0023308 | Lens Diseases | 1 | CTD_human |
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