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Fusion gene ID: 31620 |
FusionGeneSummary for RNH1_COL5A1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RNH1_COL5A1 | Fusion gene ID: 31620 | Hgene | Tgene | Gene symbol | RNH1 | COL5A1 | Gene ID | 246243 | 1289 |
| Gene name | ribonuclease H1 | collagen type V alpha 1 chain | |
| Synonyms | H1RNA|PEOB2|RNH1 | EDSC|EDSCL1 | |
| Cytomap | 2p25.3 | 9q34.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | ribonuclease H1ribonuclease H type II | collagen alpha-1(V) chaincollagen, type V, alpha 1 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P13489 | P20908 | |
| Ensembl transtripts involved in fusion gene | ENST00000534797, ENST00000397614, ENST00000397615, ENST00000397604, ENST00000533410, ENST00000438658, ENST00000354420, ENST00000356187, ENST00000533592, | ENST00000371817, ENST00000464187, | |
| Fusion gene scores | * DoF score | 6 X 2 X 5=60 | 10 X 9 X 7=630 |
| # samples | 6 | 11 | |
| ** MAII score | log2(6/60*10)=0 | log2(11/630*10)=-2.51784830486262 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: RNH1 [Title/Abstract] AND COL5A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | COL5A1 | GO:1903225 | negative regulation of endodermal cell differentiation | 23154389 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SARC | TCGA-DX-AB2H-01A | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000534797 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| 5CDS-intron | ENST00000534797 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| Frame-shift | ENST00000397614 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| 5CDS-intron | ENST00000397614 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| Frame-shift | ENST00000397615 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| 5CDS-intron | ENST00000397615 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| In-frame | ENST00000397604 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| 5CDS-intron | ENST00000397604 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-3CDS | ENST00000533410 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-intron | ENST00000533410 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-3CDS | ENST00000438658 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-intron | ENST00000438658 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-3CDS | ENST00000354420 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-intron | ENST00000354420 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-3CDS | ENST00000356187 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-intron | ENST00000356187 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-3CDS | ENST00000533592 | ENST00000371817 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
| intron-intron | ENST00000533592 | ENST00000464187 | RNH1 | chr11 | 494515 | - | COL5A1 | chr9 | 137533620 | + |
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FusionProtFeatures for RNH1_COL5A1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RNH1 | COL5A1 |
| Ribonuclease inhibitor which inhibits RNASE1, RNASE2 andANG. May play a role in redox homeostasis.{ECO:0000269|PubMed:12578357, ECO:0000269|PubMed:14515218,ECO:0000269|PubMed:17292889}. | Type V collagen is a member of group I collagen(fibrillar forming collagen). It is a minor connective tissuecomponent of nearly ubiquitous distribution. Type V collagen bindsto DNA, heparan sulfate, thrombospondin, heparin, and insulin. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RNH1_COL5A1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_RNH1_ENST00000397604_chr11_494515_-_COL5A1_ENST00000371817_chr9_137533620_+_1977aa GKKCSAPKARSALSVPAAGAGPHSSGAPTGSGSRGGGGEEEARRSWRRRRRRRGRASPAGSRPPRGPKSSPPARGRARQPPLPEQPPPQR RTGGAEVPMTSXSGAVPAECAARAVTRAPVRPRAPPSAPVRPGPRPAGMDVHTRWKARSALRPGAPLLPPLLLLLLWAPPPSRAAQPADL LKVLDFHNLPDGITKTTGFCATRRSSKGPDVAYRVTKDAQLSAPTKQLYPASAFPEDFSILTTVKAKKGSQAFLVSIYNEQGIQQIGLEL GRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIALSVHKKNVTLILDCKKKTTKFLDRSDHPMIDINGIIVFGTRILDEEVFEGDIQ QLLFVSDHRAAYDYCEHYSPDCDTAVPDTPQSQDPNPDEYYTEGDGEGETYYYEYPYYEDPEDLGKEPTPSKKPVEAAKETTEVPEELTP TPTEAAPMPETSEGAGKEEDVGIGDYDYVPSEDYYTPSPYDDLTYGEGEENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGADDLEG EFTEETIRNLDENYYDPYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQV GDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLK GEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPR GLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPP GHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPN GDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPA GPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLA GKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAP GEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK GDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP GPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR GPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEK GHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEV IQPLPIQASRTRRNIDASQLLDDGNGENYVDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGC SRDSFKVYCNFTAGGSTCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYHCYQSVAW |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_RNH1_ENST00000397604_chr11_494515_-_COL5A1_ENST00000371817_chr9_137533620_+_5931nt GGAAAAAAGTGCTCCGCGCCGAAGGCGAGGTCCGCACTCTCCGTCCCCGCGGCTGGCGCAGGACCTCACTCGAGCGGAGCGCCCACGGGG AGCGGGTCGCGGGGCGGCGGCGGCGAGGAGGAGGCGAGAAGGAGTTGGAGGAGGAGGAGGAGGAGGCGAGGGCGAGCTAGCCCAGCGGGG TCCCGGCCGCCCCGCGGGCCAAAGTCGAGCCCTCCCGCCCGTGGGCGAGCGCGCCAGCCGCCCCTTCCAGAACAGCCGCCGCCACAAAGA AGAACGGGGGGTGCCGAGGTCCCCATGACCTCCTAAAGTGGTGCGGTCCCTGCTGAGTGCGCTGCCCGGGCCGTGACCCGCGCCCCTGTG CGTCCCCGCGCGCCTCCGAGCGCCCCTGTGCGCCCCGGCCCGCGCCCCGCCGGCATGGACGTCCATACCCGCTGGAAAGCGCGCAGCGCG CTCCGCCCGGGCGCCCCGCTGCTGCCCCCGCTGCTGCTGCTGCTGCTGTGGGCGCCGCCTCCGAGCCGCGCAGCTCAGCCAGCAGATCTC CTGAAGGTTCTAGATTTTCACAACTTGCCTGATGGAATAACAAAGACAACAGGCTTTTGCGCCACGCGGCGATCTTCCAAAGGCCCGGAT GTCGCTTACAGAGTCACCAAAGACGCGCAGCTCAGCGCACCCACCAAGCAGCTGTACCCTGCGTCTGCATTTCCCGAGGACTTCTCCATC CTAACAACTGTGAAAGCCAAGAAAGGCAGCCAGGCCTTCCTGGTCTCCATCTACAACGAGCAGGGTATCCAGCAGATTGGGCTGGAGCTG GGCCGCTCTCCCGTCTTCCTCTACGAGGACCACACGGGGAAGCCTGGCCCGGAAGACTACCCCCTCTTCCGGGGCATCAACCTGTCAGAT GGCAAGTGGCACAGAATTGCTCTCAGCGTCCACAAGAAAAATGTCACCTTGATCCTCGACTGTAAAAAGAAGACCACCAAATTCCTCGAC CGCAGCGACCACCCCATGATCGACATCAATGGCATCATCGTGTTTGGCACCCGGATCCTGGATGAGGAGGTGTTTGAGGGTGACATCCAG CAGCTGCTCTTTGTCTCGGACCACCGGGCAGCTTATGATTACTGTGAGCACTACAGCCCTGACTGTGACACCGCAGTACCTGACACCCCA CAGTCGCAGGACCCCAATCCAGATGAATATTACACGGAAGGAGACGGCGAGGGTGAGACCTATTACTACGAATACCCCTACTACGAAGAC CCCGAAGACCTAGGGAAGGAGCCCACCCCCAGCAAGAAGCCCGTGGAAGCTGCCAAAGAAACCACAGAGGTCCCCGAGGAGCTGACCCCG ACCCCCACGGAAGCTGCTCCCATGCCTGAAACCAGTGAAGGGGCTGGGAAGGAAGAGGACGTCGGCATCGGGGACTATGACTACGTGCCC AGTGAGGACTACTACACGCCCTCACCGTATGATGACCTCACCTATGGCGAGGGGGAGGAGAACCCCGACCAGCCCACAGACCCAGGCGCT GGGGCCGAAATTCCCACCAGCACCGCCGACACCTCCAACTCCTCCAATCCAGCTCCGCCTCCAGGGGAAGGTGCGGATGACTTGGAGGGG GAGTTCACTGAGGAAACGATCCGGAACCTTGACGAGAACTACTACGACCCCTACTACGACCCCACCAGCTCCCCGTCGGAGATCGGGCCG GGAATGCCGGCGAACCAGGATACCATCTATGAAGGGATTGGAGGACCTCGGGGCGAGAAAGGCCAAAAGGGAGAACCAGCGATTATCGAG CCGGGCATGCTCATCGAGGGCCCGCCTGGCCCAGAAGGCCCCGCGGGTCTTCCCGGACCTCCAGGAACCATGGGTCCCACTGGCCAAGTC GGGGACCCTGGAGAAAGGGGCCCCCCTGGACGCCCAGGCCTTCCTGGGGCCGATGGCCTGCCCGGTCCTCCAGGAACCATGCTCATGCTG CCCTTCCGGTTTGGAGGTGGCGGCGATGCGGGCTCCAAAGGCCCCATGGTCTCAGCCCAGGAGTCCCAGGCGCAAGCCATTCTCCAGCAG GCCAGGTTGGCACTGAGGGGACCAGCTGGCCCGATGGGTCTCACAGGGAGACCTGGCCCTGTGGGTCCCCCTGGGAGCGGAGGTTTGAAG GGCGAGCCGGGAGACGTGGGGCCTCAGGGTCCTCGAGGTGTGCAAGGCCCGCCTGGTCCGGCCGGGAAGCCCGGAAGACGGGGTCGGGCT GGGAGTGATGGAGCCAGAGGAATGCCTGGACAAACTGGCCCCAAGGGTGACCGGGGTTTCGACGGCCTGGCTGGGTTGCCAGGCGAGAAG GGCCACAGGGGTGACCCTGGTCCTTCCGGCCCACCAGGACCTCCGGGAGACGATGGAGAAAGGGGTGACGACGGAGAAGTTGGGCCCAGG GGGCTGCCTGGGGAGCCCGGGCCACGTGGTCTGCTTGGGCCGAAGGGGCCCCCAGGTCCTCCCGGACCTCCCGGTGTCACGGGTATGGAC GGCCAGCCGGGGCCAAAAGGAAATGTGGGTCCCCAGGGAGAGCCTGGCCCCCCAGGACAGCAGGGTAATCCAGGCGCCCAGGGTCTTCCA GGCCCCCAGGGTGCAATTGGTCCTCCAGGAGAAAAGGGTCCCTTGGGGAAACCAGGCCTTCCAGGAATGCCCGGTGCTGACGGACCCCCG GGACACCCTGGCAAAGAAGGCCCTCCAGGAGAGAAAGGAGGTCAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCAGGTCCTCGA GGAGTCAAGGGGGCCGATGGCATCCGTGGTCTGAAGGGCACAAAGGGCGAGAAGGGTGAAGACGGCTTTCCTGGGTTTAAAGGAGACATG GGCATCAAGGGTGATCGGGGGGAGATCGGCCCACCCGGTCCCAGGGGAGAAGATGGCCCTGAAGGCCCAAAGGGTCGCGGAGGTCCCAAT GGTGACCCCGGTCCTCTGGGACCCCCTGGGGAGAAGGGAAAACTCGGAGTCCCAGGGTTACCAGGGTATCCAGGAAGACAAGGACCAAAG GGCTCTATTGGATTCCCTGGATTTCCTGGCGCCAATGGAGAGAAGGGCGGCAGGGGGACCCCTGGAAAGCCAGGACCGCGGGGGCAGCGA GGCCCAACGGGTCCGAGGGGTGAAAGAGGCCCCCGGGGCATCACTGGGAAGCCTGGCCCCAAGGGCAACTCCGGAGGTGACGGCCCAGCT GGCCCTCCTGGTGAACGGGGACCCAATGGACCCCAAGGACCCACAGGATTTCCTGGACCAAAGGGCCCCCCTGGCCCTCCAGGCAAGGAT GGACTCCCAGGACACCCTGGACAGAGAGGCGAGACTGGTTTCCAAGGCAAGACCGGCCCTCCAGGCCCCCCCGGCGTGGTCGGCCCTCAG GGTCCCACGGGAGAAACGGGCCCAATGGGTGAGCGTGGCCACCCTGGGCCCCCTGGACCCCCCGGTGAACAGGGGCTTCCGGGCCTTGCT GGAAAAGAAGGGACGAAGGGTGACCCAGGCCCTGCAGGCCTCCCTGGGAAAGATGGCCCTCCAGGATTACGTGGTTTCCCTGGGGACCGA GGGCTTCCTGGTCCAGTGGGAGCTCTTGGACTGAAAGGCAATGAAGGGCCCCCTGGCCCACCAGGCCCTGCGGGATCTCCAGGGGAGAGA GGTCCAGCTGGAGCCGCTGGGCCCATCGGAATTCCAGGGAGACCTGGGCCCCAGGGACCCCCAGGGCCGGCAGGAGAGAAAGGGGCTCCT GGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGAGACGGTCTCCAGGGGCCTGTGGGGCTCCCGGGTCCAGCTGGCCCTGTGGGTCCCCCT GGAGAAGACGGAGATAAGGGAGAGATCGGGGAGCCGGGGCAGAAAGGAAGCAAGGGGGACAAAGGAGAACAGGGTCCTCCTGGGCCTACA GGTCCTCAAGGCCCCATCGGACAGCCAGGCCCCTCTGGAGCTGACGGCGAGCCGGGGCCTCGGGGCCAGCAGGGCCTTTTCGGGCAGAAA GGTGATGAAGGTCCCAGAGGCTTTCCTGGACCCCCTGGGCCAGTGGGGCTGCAGGGTTTGCCAGGACCTCCAGGCGAGAAGGGTGAGACA GGAGACGTGGGCCAGATGGGCCCCCCGGGTCCCCCTGGCCCCCGAGGACCCTCCGGAGCTCCAGGTGCTGATGGCCCACAAGGTCCCCCA GGTGGAATAGGAAACCCTGGTGCAGTGGGAGAGAAGGGCGAGCCTGGCGAAGCAGGTGAGCCTGGCCTTCCGGGAGAAGGCGGCCCCCCG GGACCCAAAGGAGAAAGGGGAGAGAAGGGCGAGTCAGGCCCTTCAGGTGCTGCCGGACCCCCTGGACCCAAAGGCCCTCCCGGAGATGAT GGTCCCAAAGGCAGCCCTGGCCCAGTGGGTTTTCCTGGAGATCCTGGCCCCCCCGGAGAGCCTGGCCCCGCGGGTCAAGATGGTCCCCCT GGTGACAAAGGAGATGATGGTGAACCCGGGCAGACGGGATCCCCCGGCCCTACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGG GGTCCCCCAGGCCCCGCAGGCCCCGAAGGCAGACAGGGAGAGAAAGGGGCCAAGGGAGAAGCCGGCTTGGAAGGCCCTCCTGGGAAGACT GGCCCCATCGGCCCCCAGGGGGCCCCTGGGAAGCCCGGACCGGATGGCCTTCGAGGGATCCCTGGCCCTGTGGGAGAACAAGGTCTCCCA GGATCCCCAGGCCCGGACGGTCCCCCCGGCCCCATGGGTCCCCCAGGACTTCCCGGCCTCAAAGGAGATTCTGGTCCCAAAGGTGAAAAG GGTCATCCAGGCCTGATCGGGCTCATCGGTCCTCCGGGTGAACAGGGTGAGAAGGGCGACCGTGGTCTCCCTGGCCCCCAGGGCTCCTCC GGTCCTAAGGGAGAACAGGGTATCACTGGTCCTTCTGGCCCGATTGGGCCTCCTGGGCCCCCTGGCCTGCCGGGTCCGCCTGGTCCAAAA GGTGCTAAGGGCTCCTCGGGTCCAACTGGCCCGAAGGGTGAGGCAGGCCACCCAGGACCCCCAGGCCCCCCGGGCCCCCCGGGAGAGGTC ATCCAGCCCCTGCCAATCCAGGCATCCAGGACGCGGCGGAACATCGACGCCAGCCAGCTGCTGGACGACGGGAATGGCGAGAACTACGTG GACTACGCGGACGGCATGGAAGAGATCTTCGGCTCTCTCAACTCTCTGAAGCTGGAGATTGAGCAGATGAAACGGCCCCTGGGCACGCAG CAGAACCCCGCCCGCACCTGCAAGGACCTGCAGCTCTGCCACCCCGACTTCCCAGATGGTGAATACTGGGTCGATCCTAACCAAGGATGC TCCAGGGATTCCTTCAAGGTTTACTGCAACTTCACAGCCGGGGGGTCGACATGCGTCTTCCCTGACAAGAAGTCCGAAGGGGCCAGAATC ACTTCTTGGCCCAAAGAAAACCCGGGCTCCTGGTTCAGTGAATTCAAGCGTGGGAAACTGCTCTCCTATGTGGACGCCGAGGGCAACCCT GTGGGTGTGGTACAGATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACGTCACCTACCACTGCTACCAGTCAGTGGCCTGG CAGGACGCAGCCACGGGCAGCTACGACAAGGCCCTCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTATGACAACAACCCCTACATC CGCGCCCTGGTGGACGGCTGTGCTACCAAGAAAGGCTACCAGAAGACGGTTCTGGAGATCGACACCCCCAAAGTGGAGCAGGTGCCCATC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_RNH1_ENST00000397604_chr11_494515_-_COL5A1_ENST00000371817_chr9_137533620_+_10190nt CGAGCCGGCTCGAACACGCCCGCGCCGCTGACTGGCGGGTGGGGTTGTCGACACGTTCAACCCGTTCTGCTGGCTCGAGAACGAAGTAGG CCGTCTCGCTCTGGGTCTCCAGGCCCGCGACCGTCCGCCAGTCGTCCCGAGGCCACTCTTCACCTCCACCATGAGCCTGGACATCCAGAG CCTGGACATCCAGTGTGAGGAGCTGAGCGACGCTAGATGGGCCGAGCTCCTCCCTCTGCTCCAGCAGTGCCAAGTGGTCAGGCTGGACGA CTGTGGCCTCACGGAAGCACGGTGCAAGGACATCAGCTCTGCACTTCGAGTCAACCCTGCACTGGCAGAGCTCAACCTGCGCAGCAACGA GCTGGGCGATGTCGGCGTGCATTGCGTGCTCCAGGGCCTGCAGACCCCCTCCTGCAAGATCCAGAAGCTGAGCCTCCAGAACTGCTGCCT GACGGGGGCCGGCTGCGGGGTCCTGTCCAGCACACTACGCACCCTGCCCACCCTGCAGGAGCTGCACCTCAGCGACAACCTCTTGGGGGA TGCGGGCCTGCAGCTGCTCTGCGAAGGACTCCTGGACCCCCAGTGCCGCCTGGAAAAGCTGCAGCTGGAGTATTGCAGCCTCTCGGCTGC CAGCTGCGAGCCCCTGGCCTCCGTGCTCAGGGCCAAGCCGGACTTCAAGGAGCTCACGGTTAGCAACAACGACATCAATGAGGCTGGCGT CCGTGTGCTGTGCCAGGGCCTGAAGGACTCCCCCTGCCAGCTGGAGGCGCTCAAGCTGGAGAGCTGCGGTGTGACATCAGACAACTGCCG GGACCTGTGCGGCATTGTGGCCTCCAAGGCCTCGCTGCGGGAGCTGGCCCTGGGCAGCAACAAGCTGGGTGATGTGGGCATGGCGGAGCT GTGCCCAGGGCTGCTCCACCCCAGCTCCAGGCTCAGGACCCTGTGGATCTGGGAGTGTGGCATCACTGCCAAGGGCTGCGGGGATCTGTG CCGTGTCCTCAGGGCCAAGGAGAGCCTGAAGGAGCTCAGCCTGGCCGGCAACGAGCTGGGGGATGAGGGTGCCCGACTGCTGTGTGAGAC CCTGCTGGAACCTGGCTGCCAGCTGGAGTCGCTGTGGGTGAAGTCCTGCAGCTTCACAGCCGCCTGCTGCTCCCACTTCAGCTCAGTGCT GGCCCAGAACAGGTTTCTCCTGGAGCTACAGATAAGCAACAACAGGCTGGAGGATGCGGGCGTGCGGGAGCTGTGCCAGGGCCTGGGCCA GCCTGGCTCTGTGCTGCGGGTGCTCTGGTTGGCCGACTGCGATGTGAGTGACAGCAGCTGCAGCAGCCTCGCCGCAACCCTGTTGGCCAA CCACAGCCTGCGTGAGCTGGACCTCAGCAACAACTGCCTGGGGGACGCCGGCATCCTGCAGCTGGTGGAGAGCGTCCGGCAGCCGGGCTG CCTCCTGGAGCAGCTGGTCCTGTACGACATTTACTGGTCTGAGGAGATGGAGGACCGGCTGCAGGCCCTGGAGAAGGACAAGCCATCCCT GAGGGTCATCTCCTGAGGCTCTTCCTGCTGCTGCTCTCCCTGGACGACCGGCCTCGAGGCAACCCTGGGGCCCACCAGCCCCTGCCATGC TCTCACCCTGCATATCCTAGGTTTGAAGAGAAACGCTCAGATCCGCTTATTTCTGCCAGTATATTTTGGACACTTTATAATCATTAAAGC ACTTTCTTGGCAGGAAAAAAGTGCTCCGCGCCGAAGGCGAGGTCCGCACTCTCCGTCCCCGCGGCTGGCGCAGGACCTCACTCGAGCGGA GCGCCCACGGGGAGCGGGTCGCGGGGCGGCGGCGGCGAGGAGGAGGCGAGAAGGAGTTGGAGGAGGAGGAGGAGGAGGCGAGGGCGAGCT AGCCCAGCGGGGTCCCGGCCGCCCCGCGGGCCAAAGTCGAGCCCTCCCGCCCGTGGGCGAGCGCGCCAGCCGCCCCTTCCAGAACAGCCG CCGCCACAAAGAAGAACGGGGGGTGCCGAGGTCCCCATGACCTCCTAAAGTGGTGCGGTCCCTGCTGAGTGCGCTGCCCGGGCCGTGACC CGCGCCCCTGTGCGTCCCCGCGCGCCTCCGAGCGCCCCTGTGCGCCCCGGCCCGCGCCCCGCCGGCATGGACGTCCATACCCGCTGGAAA GCGCGCAGCGCGCTCCGCCCGGGCGCCCCGCTGCTGCCCCCGCTGCTGCTGCTGCTGCTGTGGGCGCCGCCTCCGAGCCGCGCAGCTCAG CCAGCAGATCTCCTGAAGGTTCTAGATTTTCACAACTTGCCTGATGGAATAACAAAGACAACAGGCTTTTGCGCCACGCGGCGATCTTCC AAAGGCCCGGATGTCGCTTACAGAGTCACCAAAGACGCGCAGCTCAGCGCACCCACCAAGCAGCTGTACCCTGCGTCTGCATTTCCCGAG GACTTCTCCATCCTAACAACTGTGAAAGCCAAGAAAGGCAGCCAGGCCTTCCTGGTCTCCATCTACAACGAGCAGGGTATCCAGCAGATT GGGCTGGAGCTGGGCCGCTCTCCCGTCTTCCTCTACGAGGACCACACGGGGAAGCCTGGCCCGGAAGACTACCCCCTCTTCCGGGGCATC AACCTGTCAGATGGCAAGTGGCACAGAATTGCTCTCAGCGTCCACAAGAAAAATGTCACCTTGATCCTCGACTGTAAAAAGAAGACCACC AAATTCCTCGACCGCAGCGACCACCCCATGATCGACATCAATGGCATCATCGTGTTTGGCACCCGGATCCTGGATGAGGAGGTGTTTGAG GGTGACATCCAGCAGCTGCTCTTTGTCTCGGACCACCGGGCAGCTTATGATTACTGTGAGCACTACAGCCCTGACTGTGACACCGCAGTA CCTGACACCCCACAGTCGCAGGACCCCAATCCAGATGAATATTACACGGAAGGAGACGGCGAGGGTGAGACCTATTACTACGAATACCCC TACTACGAAGACCCCGAAGACCTAGGGAAGGAGCCCACCCCCAGCAAGAAGCCCGTGGAAGCTGCCAAAGAAACCACAGAGGTCCCCGAG GAGCTGACCCCGACCCCCACGGAAGCTGCTCCCATGCCTGAAACCAGTGAAGGGGCTGGGAAGGAAGAGGACGTCGGCATCGGGGACTAT GACTACGTGCCCAGTGAGGACTACTACACGCCCTCACCGTATGATGACCTCACCTATGGCGAGGGGGAGGAGAACCCCGACCAGCCCACA GACCCAGGCGCTGGGGCCGAAATTCCCACCAGCACCGCCGACACCTCCAACTCCTCCAATCCAGCTCCGCCTCCAGGGGAAGGTGCGGAT GACTTGGAGGGGGAGTTCACTGAGGAAACGATCCGGAACCTTGACGAGAACTACTACGACCCCTACTACGACCCCACCAGCTCCCCGTCG GAGATCGGGCCGGGAATGCCGGCGAACCAGGATACCATCTATGAAGGGATTGGAGGACCTCGGGGCGAGAAAGGCCAAAAGGGAGAACCA GCGATTATCGAGCCGGGCATGCTCATCGAGGGCCCGCCTGGCCCAGAAGGCCCCGCGGGTCTTCCCGGACCTCCAGGAACCATGGGTCCC ACTGGCCAAGTCGGGGACCCTGGAGAAAGGGGCCCCCCTGGACGCCCAGGCCTTCCTGGGGCCGATGGCCTGCCCGGTCCTCCAGGAACC ATGCTCATGCTGCCCTTCCGGTTTGGAGGTGGCGGCGATGCGGGCTCCAAAGGCCCCATGGTCTCAGCCCAGGAGTCCCAGGCGCAAGCC ATTCTCCAGCAGGCCAGGTTGGCACTGAGGGGACCAGCTGGCCCGATGGGTCTCACAGGGAGACCTGGCCCTGTGGGTCCCCCTGGGAGC GGAGGTTTGAAGGGCGAGCCGGGAGACGTGGGGCCTCAGGGTCCTCGAGGTGTGCAAGGCCCGCCTGGTCCGGCCGGGAAGCCCGGAAGA CGGGGTCGGGCTGGGAGTGATGGAGCCAGAGGAATGCCTGGACAAACTGGCCCCAAGGGTGACCGGGGTTTCGACGGCCTGGCTGGGTTG CCAGGCGAGAAGGGCCACAGGGGTGACCCTGGTCCTTCCGGCCCACCAGGACCTCCGGGAGACGATGGAGAAAGGGGTGACGACGGAGAA GTTGGGCCCAGGGGGCTGCCTGGGGAGCCCGGGCCACGTGGTCTGCTTGGGCCGAAGGGGCCCCCAGGTCCTCCCGGACCTCCCGGTGTC ACGGGTATGGACGGCCAGCCGGGGCCAAAAGGAAATGTGGGTCCCCAGGGAGAGCCTGGCCCCCCAGGACAGCAGGGTAATCCAGGCGCC CAGGGTCTTCCAGGCCCCCAGGGTGCAATTGGTCCTCCAGGAGAAAAGGGTCCCTTGGGGAAACCAGGCCTTCCAGGAATGCCCGGTGCT GACGGACCCCCGGGACACCCTGGCAAAGAAGGCCCTCCAGGAGAGAAAGGAGGTCAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTAC CCAGGTCCTCGAGGAGTCAAGGGGGCCGATGGCATCCGTGGTCTGAAGGGCACAAAGGGCGAGAAGGGTGAAGACGGCTTTCCTGGGTTT AAAGGAGACATGGGCATCAAGGGTGATCGGGGGGAGATCGGCCCACCCGGTCCCAGGGGAGAAGATGGCCCTGAAGGCCCAAAGGGTCGC GGAGGTCCCAATGGTGACCCCGGTCCTCTGGGACCCCCTGGGGAGAAGGGAAAACTCGGAGTCCCAGGGTTACCAGGGTATCCAGGAAGA CAAGGACCAAAGGGCTCTATTGGATTCCCTGGATTTCCTGGCGCCAATGGAGAGAAGGGCGGCAGGGGGACCCCTGGAAAGCCAGGACCG CGGGGGCAGCGAGGCCCAACGGGTCCGAGGGGTGAAAGAGGCCCCCGGGGCATCACTGGGAAGCCTGGCCCCAAGGGCAACTCCGGAGGT GACGGCCCAGCTGGCCCTCCTGGTGAACGGGGACCCAATGGACCCCAAGGACCCACAGGATTTCCTGGACCAAAGGGCCCCCCTGGCCCT CCAGGCAAGGATGGACTCCCAGGACACCCTGGACAGAGAGGCGAGACTGGTTTCCAAGGCAAGACCGGCCCTCCAGGCCCCCCCGGCGTG GTCGGCCCTCAGGGTCCCACGGGAGAAACGGGCCCAATGGGTGAGCGTGGCCACCCTGGGCCCCCTGGACCCCCCGGTGAACAGGGGCTT CCGGGCCTTGCTGGAAAAGAAGGGACGAAGGGTGACCCAGGCCCTGCAGGCCTCCCTGGGAAAGATGGCCCTCCAGGATTACGTGGTTTC CCTGGGGACCGAGGGCTTCCTGGTCCAGTGGGAGCTCTTGGACTGAAAGGCAATGAAGGGCCCCCTGGCCCACCAGGCCCTGCGGGATCT CCAGGGGAGAGAGGTCCAGCTGGAGCCGCTGGGCCCATCGGAATTCCAGGGAGACCTGGGCCCCAGGGACCCCCAGGGCCGGCAGGAGAG AAAGGGGCTCCTGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGAGACGGTCTCCAGGGGCCTGTGGGGCTCCCGGGTCCAGCTGGCCCT GTGGGTCCCCCTGGAGAAGACGGAGATAAGGGAGAGATCGGGGAGCCGGGGCAGAAAGGAAGCAAGGGGGACAAAGGAGAACAGGGTCCT CCTGGGCCTACAGGTCCTCAAGGCCCCATCGGACAGCCAGGCCCCTCTGGAGCTGACGGCGAGCCGGGGCCTCGGGGCCAGCAGGGCCTT TTCGGGCAGAAAGGTGATGAAGGTCCCAGAGGCTTTCCTGGACCCCCTGGGCCAGTGGGGCTGCAGGGTTTGCCAGGACCTCCAGGCGAG AAGGGTGAGACAGGAGACGTGGGCCAGATGGGCCCCCCGGGTCCCCCTGGCCCCCGAGGACCCTCCGGAGCTCCAGGTGCTGATGGCCCA CAAGGTCCCCCAGGTGGAATAGGAAACCCTGGTGCAGTGGGAGAGAAGGGCGAGCCTGGCGAAGCAGGTGAGCCTGGCCTTCCGGGAGAA GGCGGCCCCCCGGGACCCAAAGGAGAAAGGGGAGAGAAGGGCGAGTCAGGCCCTTCAGGTGCTGCCGGACCCCCTGGACCCAAAGGCCCT CCCGGAGATGATGGTCCCAAAGGCAGCCCTGGCCCAGTGGGTTTTCCTGGAGATCCTGGCCCCCCCGGAGAGCCTGGCCCCGCGGGTCAA GATGGTCCCCCTGGTGACAAAGGAGATGATGGTGAACCCGGGCAGACGGGATCCCCCGGCCCTACTGGTGAACCAGGTCCATCGGGGCCT CCAGGAAAAAGGGGTCCCCCAGGCCCCGCAGGCCCCGAAGGCAGACAGGGAGAGAAAGGGGCCAAGGGAGAAGCCGGCTTGGAAGGCCCT CCTGGGAAGACTGGCCCCATCGGCCCCCAGGGGGCCCCTGGGAAGCCCGGACCGGATGGCCTTCGAGGGATCCCTGGCCCTGTGGGAGAA CAAGGTCTCCCAGGATCCCCAGGCCCGGACGGTCCCCCCGGCCCCATGGGTCCCCCAGGACTTCCCGGCCTCAAAGGAGATTCTGGTCCC AAAGGTGAAAAGGGTCATCCAGGCCTGATCGGGCTCATCGGTCCTCCGGGTGAACAGGGTGAGAAGGGCGACCGTGGTCTCCCTGGCCCC CAGGGCTCCTCCGGTCCTAAGGGAGAACAGGGTATCACTGGTCCTTCTGGCCCGATTGGGCCTCCTGGGCCCCCTGGCCTGCCGGGTCCG CCTGGTCCAAAAGGTGCTAAGGGCTCCTCGGGTCCAACTGGCCCGAAGGGTGAGGCAGGCCACCCAGGACCCCCAGGCCCCCCGGGCCCC CCGGGAGAGGTCATCCAGCCCCTGCCAATCCAGGCATCCAGGACGCGGCGGAACATCGACGCCAGCCAGCTGCTGGACGACGGGAATGGC GAGAACTACGTGGACTACGCGGACGGCATGGAAGAGATCTTCGGCTCTCTCAACTCTCTGAAGCTGGAGATTGAGCAGATGAAACGGCCC CTGGGCACGCAGCAGAACCCCGCCCGCACCTGCAAGGACCTGCAGCTCTGCCACCCCGACTTCCCAGATGGTGAATACTGGGTCGATCCT AACCAAGGATGCTCCAGGGATTCCTTCAAGGTTTACTGCAACTTCACAGCCGGGGGGTCGACATGCGTCTTCCCTGACAAGAAGTCCGAA GGGGCCAGAATCACTTCTTGGCCCAAAGAAAACCCGGGCTCCTGGTTCAGTGAATTCAAGCGTGGGAAACTGCTCTCCTATGTGGACGCC GAGGGCAACCCTGTGGGTGTGGTACAGATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACGTCACCTACCACTGCTACCAG TCAGTGGCCTGGCAGGACGCAGCCACGGGCAGCTACGACAAGGCCCTCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTATGACAAC AACCCCTACATCCGCGCCCTGGTGGACGGCTGTGCTACCAAGAAAGGCTACCAGAAGACGGTTCTGGAGATCGACACCCCCAAAGTGGAG CAGGTGCCCATCGTGGACATCATGTTCAATGACTTCGGTGAAGCGTCACAGAAATTTGGATTTGAAGTGGGGCCGGCTTGCTTCATGGGC TAGGAGCCGCCGAGCCCGGGCTCCCGAGAGCAACCTCGTGACCTCAGCATGCCATTCGTTCGTGAGTGTCCCGTGCACGTCCTGACCCTG GACAGTGAAGGCTTCTCCCTCCCCTCCCACCTGACTTCATCTACGCCTCGGCACCACGGGGTGTGGGACCCCAGCCCGGAGAGAACAGAG GGAAGGAGCCGCGCCCCCACCTGGAGCTGAATCACATGACCTAGCTGCACCCCAGCGCCTGGGCCCGCCCCACGCTCTGTCCACACCCAC GCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCTCGCCCGACCCATCCTGTTCGTGAATAGGTCTCAGGGGTTGGGGGAGGGACT GCCAGATTTGGACACTATATTTTTTTCTAAATTCAACTTGAAGATGTGTATTTCCCCTGACCTTCAAAAAATGTTCCAAGGTAAGCCTCG TAAAGGTCATCCCACCATCACCAAAGCCTCCGTTTTTAACAACCTCCAACACGATCCATTTAGAGGCCAAATGTCATTCTGCAGGTGCCT TCCCGATGGATTAAAGGTGCTTATGTTTTTGTGAGTTTTAAGTAAATATTTGTATTGTATTGTTATAAATGTTAAGTGTGCCTGGCTTTC AATCATGCACGGAAACCCAGTCTCAGTCCCACGGACAGAATGGGCGAGGCATGGATTCTGGGTTGCAGTACCGTTCTGATTAGAAATAGG AAGTCTCCCCACCCCCGCCCTGGCCAAGAACGTGCAATAAATTGGAAGTTTGCCCCGGGGCAGCAAGAATTTATGCTGCCATTGAAAAGC AGGTACCAGTGCCCCTTTTCAGACAGTTTTTGATTCGCTCTAGACTTTTTTTTTTTTTAATAGGGAAAAAATTTGATAATTTTCTTTTTT CTACATGCACTTAAGACTAAAACACAGGTTTGGATTAATTTTATTTGCTTCCTTTTTCCGCTTTTCTTCCCGCAGAGCCTGATGGGAGAA TGTCCAGGGCAGGGAAACCACATTTTTTGTAGGTGATAACTCAATGAAAATTGGTGCTTATTTTTTACACTTCTCTCTTGTGGCTCTCTT GTGGTGCTATCTATCTGTTTTAAGGTCTCCTTGAAGGCGCACTGGGGACCCTGGCCATGCCTCGTTCTCCCTGCTTTCTTTATCCTGTTA TTGCCTCCACAGTCTGTTGCCAAGGACTCTAAGATCAATGCACGTCACTTTCCTTTCCACTGGGCAGGATAGCCAAGCACACTCCCTCCT GCGCTCTCCCGCCCCGGTGCGTCCACTCCCGAGGGCTGTTATGAGGACTGGGTTGTGCCTACTTGATTTGAAAACACACACAAGCAATAA AAAGCCTCTTCCTGCATTGTCTGTGGTGTGACCATAGCAGATTATATTTGGTTCCTGAATGTTTGTGGTGCTAATTTCTGTGTTTGTTCC AAGCCGTTCAGTCATGCCATGCGCTGCCTCGGTAGATGGAGTAATGTACAATGAACTCCATGAGTCTCTCCAGGGCTGCCTGCAGCACGT CTTTTCCAAGTAGCCTATTTGGATTCCCATCTCAAATGTCCTGGATGCGAGCGTCAGCGGCTCCAGAGCTCGGGGCGGGTGAGGTCCCCT TTGGGGAACCCTTTCCTGGCCATCGAGGTCGGGGGGCTGCCGTCTGTGGGCAGGAGGACCCGAGGGGCAGCCAGGAAAGGCGATCTCTTC ACTGTGAAAAGTTGCCCGGGTGCAGCGCCTTTTCCTTCTACCATGGGAAATGCAGGCTGGGCCCTTGGGGTGAGCCTGCGGGGCTCTGGT GCTGTCCCCGACCCCCACCACCACCAGAATGCAGTTCCAGCTTAGGAAGCCACAAACAAGCCACCCAGGAGGAACAAAACACCGCCAGCG TGGATTTTCCAAATTTCCCTGGAAAGTAAGTCTCGCTCTTGCCAAAGAAAAGTCTGGCTTGGAGAGTCTCTGGAGCCCAGGATGCCAGCA TGTGCCAATGACTGTCACCTTCATCTCTTCAAAAGAAAAGCCATAGCCGAGGACTGTCCCGCGACCCCCGTGGACTGCGTCTAGGTCATG TGATTCTGTTTTCATTTCTCATCCCATCCAATTTGTCCTTTTCTCCTGTCATTTTCTTCCTCTGTGGTCCCTTCAAAGTTGTTATAATTT GTACTGAACTTCAAAATGTGTCCCGTTCTCCCCAGACCACTCTAGCCACAGTATATTGCAATAAAATTACTTCTTATATTTGCAGAAATT CTTTTGGTGTAATTTTATTTTTTCCTCTCAATATATATAATTGGACAAACGCTGGCAAAAAGAAAAAAATGGTAAGCAAAAAACCCAAGA TAAAGTTTCGAGGACATCAGGCCTTTTGAAATACAATGTCAAATGACACATTGTACGGTTTCAAAAAATCCGCTAGACATGTCATAAGTT TTAACTGTAATGCCCAGGAAAGGATATCTTAAAATATTCTAAACTTGTGTAACAAAGGAATAATTAACTGTAATAGTTTTTCAATAAATC |
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FusionGenePPI for RNH1_COL5A1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| RNH1 | ANG, TNFAIP3, USP32P2, G3BP2, SLX4IP, MYC, SIRT7, DSTN, PRDX1, UBQLN2, ADSS, PRR12, COL1A1, FN1, IQCB1, NPM1, SOX2, PTGES3, ERO1L, LSM2, RAB1B, SDCBP, RNASE7, NTRK1, CEP19, CDC20, LMO7, PSMD2, MAP4K4, FBXL12, MCM2, CDC73, RNASE3, RNASE1, PRPF3, PRPF4, ALYREF, FOXA1, G3BP1 | COL5A1 | SPARC, THBS1, MAG, SIRT7, PDGFA, PDGFB, C1QTNF2, PTPN2, COL8A2, CSNK2A2, PTPN1, TGM2, PLOD1, MMP9, MMP2, PRSS23, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RNH1_COL5A1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RNH1_COL5A1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | COL5A1 | C4225429 | Ehlers-Danlos syndrome classic type | 4 | UNIPROT |
| Tgene | COL5A1 | C0268335 | Ehlers-Danlos syndrome type 1 | 3 | CTD_human;ORPHANET |
| Tgene | COL5A1 | C0268336 | Ehlers-Danlos syndrome type 2 | 2 | CTD_human;ORPHANET |
| Tgene | COL5A1 | C0000786 | Spontaneous abortion | 1 | CTD_human |
| Tgene | COL5A1 | C0022548 | Keloid | 1 | CTD_human |
| Tgene | COL5A1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Tgene | COL5A1 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
| Tgene | COL5A1 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
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