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Fusion gene ID: 31432 |
FusionGeneSummary for RNF13_LIMCH1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RNF13_LIMCH1 | Fusion gene ID: 31432 | Hgene | Tgene | Gene symbol | RNF13 | LIMCH1 | Gene ID | 11342 | 22998 |
Gene name | ring finger protein 13 | LIM and calponin homology domains 1 | |
Synonyms | RZF | LIMCH1A|LMO7B | |
Cytomap | 3q25.1 | 4p13 | |
Type of gene | protein-coding | protein-coding | |
Description | E3 ubiquitin-protein ligase RNF13RING zinc finger proteinRING-type E3 ubiquitin transferase RNF13 | LIM and calponin homology domains-containing protein 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | O43567 | Q9UPQ0 | |
Ensembl transtripts involved in fusion gene | ENST00000392894, ENST00000344229, ENST00000361785, | ENST00000513024, ENST00000509638, ENST00000508501, ENST00000512946, ENST00000313860, ENST00000512632, ENST00000512820, ENST00000503057, ENST00000511496, ENST00000514096, ENST00000509277, ENST00000396595, ENST00000381753, ENST00000509454, ENST00000515785, | |
Fusion gene scores | * DoF score | 3 X 5 X 5=75 | 10 X 10 X 6=600 |
# samples | 6 | 10 | |
** MAII score | log2(6/75*10)=-0.321928094887362 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/600*10)=-2.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RNF13 [Title/Abstract] AND LIMCH1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA317546 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000392894 | ENST00000513024 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000509638 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000508501 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000512946 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000313860 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000512632 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000512820 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000503057 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000511496 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000514096 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000509277 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000396595 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000381753 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000509454 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000392894 | ENST00000515785 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
In-frame | ENST00000344229 | ENST00000513024 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000509638 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000508501 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000512946 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000313860 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000512632 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000512820 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000503057 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000511496 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000514096 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000509277 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000396595 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000381753 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000509454 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5CDS-intron | ENST00000344229 | ENST00000515785 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-3CDS | ENST00000361785 | ENST00000513024 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000509638 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000508501 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000512946 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000313860 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000512632 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000512820 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000503057 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000511496 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000514096 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000509277 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000396595 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000381753 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000509454 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
5UTR-intron | ENST00000361785 | ENST00000515785 | RNF13 | chr3 | 149589944 | + | LIMCH1 | chr4 | 41652408 | + |
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FusionProtFeatures for RNF13_LIMCH1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
RNF13 | LIMCH1 |
E3 ubiquitin-protein ligase that may play a role incontrolling cell proliferation. {ECO:0000269|PubMed:18794910}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000313860 | + | 11 | 27 | 782_823 | 555 | 1084 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000381753 | + | 5 | 20 | 782_823 | 389 | 891 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000396595 | + | 6 | 21 | 782_823 | 401 | 903 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000508501 | + | 11 | 26 | 782_823 | 555 | 1057 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000511496 | + | 8 | 23 | 782_823 | 396 | 898 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512820 | + | 10 | 26 | 782_823 | 543 | 1070 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512946 | + | 11 | 26 | 782_823 | 555 | 1058 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000513024 | + | 10 | 26 | 782_823 | 384 | 911 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000313860 | + | 11 | 27 | 1011_1077 | 555 | 1084 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000381753 | + | 5 | 20 | 1011_1077 | 389 | 891 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000396595 | + | 6 | 21 | 1011_1077 | 401 | 903 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000508501 | + | 11 | 26 | 1011_1077 | 555 | 1057 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000511496 | + | 8 | 23 | 1011_1077 | 396 | 898 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512820 | + | 10 | 26 | 1011_1077 | 543 | 1070 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512946 | + | 11 | 26 | 1011_1077 | 555 | 1058 | Domain | LIM zinc-binding |
Tgene | >LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000513024 | + | 10 | 26 | 1011_1077 | 384 | 911 | Domain | LIM zinc-binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000344229 | + | 5 | 11 | 65_160 | 107 | 382 | Domain | Note=PA |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000392894 | + | 4 | 10 | 65_160 | 107 | 382 | Domain | Note=PA |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000344229 | + | 5 | 11 | 204_381 | 107 | 382 | Topological domain | Cytoplasmic |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000344229 | + | 5 | 11 | 35_182 | 107 | 382 | Topological domain | Lumenal |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000392894 | + | 4 | 10 | 204_381 | 107 | 382 | Topological domain | Cytoplasmic |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000392894 | + | 4 | 10 | 35_182 | 107 | 382 | Topological domain | Lumenal |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000344229 | + | 5 | 11 | 183_203 | 107 | 382 | Transmembrane | Helical |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000392894 | + | 4 | 10 | 183_203 | 107 | 382 | Transmembrane | Helical |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000344229 | + | 5 | 11 | 240_282 | 107 | 382 | Zinc finger | RING-type%3B atypical |
Hgene | >RNF13 | chr3:149589944 | chr4:41652408 | ENST00000392894 | + | 4 | 10 | 240_282 | 107 | 382 | Zinc finger | RING-type%3B atypical |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000313860 | + | 11 | 27 | 354_439 | 555 | 1084 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000381753 | + | 5 | 20 | 354_439 | 389 | 891 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000396595 | + | 6 | 21 | 354_439 | 401 | 903 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000508501 | + | 11 | 26 | 354_439 | 555 | 1057 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000511496 | + | 8 | 23 | 354_439 | 396 | 898 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512820 | + | 10 | 26 | 354_439 | 543 | 1070 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512946 | + | 11 | 26 | 354_439 | 555 | 1058 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000513024 | + | 10 | 26 | 354_439 | 384 | 911 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000313860 | + | 11 | 27 | 21_125 | 555 | 1084 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000381753 | + | 5 | 20 | 21_125 | 389 | 891 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000396595 | + | 6 | 21 | 21_125 | 401 | 903 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000508501 | + | 11 | 26 | 21_125 | 555 | 1057 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000511496 | + | 8 | 23 | 21_125 | 396 | 898 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512820 | + | 10 | 26 | 21_125 | 543 | 1070 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000512946 | + | 11 | 26 | 21_125 | 555 | 1058 | Domain | Calponin-homology (CH) |
Tgene | LIMCH1 | chr3:149589944 | chr4:41652408 | ENST00000513024 | + | 10 | 26 | 21_125 | 384 | 911 | Domain | Calponin-homology (CH) |
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FusionGeneSequence for RNF13_LIMCH1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_RNF13_ENST00000392894_chr3_149589944_+_LIMCH1_ENST00000513024_chr4_41652408_+_4382nt CTCTTTAGTAGGTCGGGTGAGTGTAGTGTGCAGGGAAGAGACGCGTCAGCGCCAGGGCCAGGCCCGCCCGGGGGCAGCCCGGCAGCCGAA TCTTGGGCTACTCTGTCCCAACAGCCGGAGCAGATCAGACCGACCGGCCCTGCCCGCTCGGTCCCGCGCCCTCCAGACCCTACGGTCTCC GTTTCTAGGGGCACATGGTTAGCGGCAGGCGCCCACAGCCAATCCACTTTGCCAGCCTGCCCCTTCCTCTGCCAAGAGCAGCTTCTTCAG CCGCGCTCCAGTTCCGCAGACGCCTGCCCCACCCTGCTCTTCCCTTCCAGGGAAGACGGATCACGCGGCCAAGAACGAGACTCGCAAACT GGGCATTTCTCCGAGCCGGGCTAGAGCAAGTAGCGAGACTCCGCGTGAGAGTGGGAAAGAGCCTTAACAGGCAACCATGTTGCCCAGTGG GTTTTCTGTGCCTTTGGGTGCGGACCAATGAGGCGCGTGGGGCGGGACTTCCGCTTCGCCTAGGTGTTGTCGTCCCTGCTAGTACTCCGG GCTGTGGGGGTCGGTGCGGATATTCAGTCATGAAATCAGGGTAGGGACTTCTCCCGCAGCGACGCGGCTGGCAAGACTGTTTGTGTTGCG GGGGCCGGACTTCAAGGTGATTTTACAACGAGATGCTGCTCTCCATAGGGATGCTCATGCTGTCAGCCACACAAGTCTACACCATCTTGA CTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTGTAGAAGCAGACATTTTAGCATATAACTTTGAAAATGCATCTCAGACATTTGATG ACCTCCCTGCAAGATTTGGTTATAGACTTCCAGCTGAAGGTTTAAAGGGTTTTTTGATTAACTCAAAACCAGAGAATGCCTGTGAACCCA TAGTGCCTCCACCAGTAAAAGACAATTCATCTGGCACTTTCATCGTGTTAATTAGAAGACTTGATTGTAATTTTGATATAAAGGTAGACG GGAAAGTCAGTGTGAATGGAGAGACGGTTCATAGAGAGGAGGAGAAGGAAAGAGAGTGTCCCACGGTGGCACCTGCCCACTCCTTAACCA AATCCCAGATGTTTGAAGGTGTGGCCAGAGTGCACGGGTCTCCACTGGAGCTGAAACAAGACAACGGTAGCATCGAGATCAACATAAAGA AGCCAAACTCTGTTCCCCAAGAGCTCGCAGCAACCACTGAGAAAACGGAACCGAATAGTCAAGAGGACAAGAATGATGGTGGAAAATCAA GAAAAGGGAATATAGAACTTGCCTCATCAGAACCACAGCATTTTACAACAACTGTGACTCGATGCAGCCCGACCGTGGCCTTTGTGGAAT TTCCCTCCAGCCCCCAGCTGAAGAATGATGTGTCGGAAGAAAAAGACCAGAAGAAACCAGAAAATGAAATGAGTGGAAAGGTGGAGTTGG TGCTGTCACAAAAGGTGGTAAAGCCAAAATCTCCAGAACCCGAAGCAACGCTGACATTTCCATTTCTGGACAAAATGCCTGAAGCCAACC AACTACATTTGCCAAATCTCAATTCTCAAGAGTCGCCTGGCACTGCCAGTGTTCCGCTTAGAGTTCAGAACTCTTGGCGACGATCCCAGT TTTTCTCCCAGTCAGTGGATTCTCCAAGCAGTGAGAAGTCACCTGTTATGACACCTTTTAAGTTCTGGGCATGGGACCCAGAAGAGGAGC GCAGGCGACAGGAAAAATGGCAACAGGAACAGGAACGTTTGCTCCAGGAGAGATACCAGAAGGAGCAGGACAAGCTGAAAGAAGAGTGGG AAAAGGCCCAAAAGGAGGTGGAAGAGGAAGAACGCAGATACTATGAGGAGGAGCGTAAGATAATTGAAGACACTGTGGTTCCATTTACTG TTTCTTCAAGTTCCGCTGACCAGCTGTCTACCTCTTCCTCCATGACTGAAGGCAGTGGGACAATGAATAAGATAGACCTGGGAAACTGTC AAGATGAAAAACAAGACAGAAGATGGAAGAAATCATTCCAGGGAGATGACAGTGACTTATTGCTGAAGACTAGGGAAAGTGATCGACTGG AGGAGAAGGGCAGCCTAACTGAAGGGGCCTTGGCTCATTCTGGGAACCCTGTATCAAAAGGAGTCCATGAAGACCATCAGCTGGATACCG AGGCTGGGGCCCCACACTGTGGAACAAACCCACAGCTTGCTCAGGATCCATCCCAGAATCAGCAGACATCAAATCCAACGCACAGTTCAG AAGATGTGAAGCCAAAAACCCTCCCGCTGGATAAAAGCATTAACCATCAGATCGAGTCTCCCAGTGAAAGGCGGAAGTCTATAAGTGGAA AGAAGCTGTGCTCTTCCTGTGGGCTTCCTTTGGGTAAAGGAGCTGCAATGATCATCGAGACCCTCAATCTCTATTTTCACATCCAGTGTT TCAGGTGTGGAATTTGTAAAGGCCAGCTTGGAGATGCAGTGAGTGGGACGGATGTTAGGATTCGAAATGGTCTCCTGAACTGTAATGATT GCTACATGCGATCCAGAAGTGCCGGGCAGCCTACAACATTGTGACACGGCTTTCAAGCTTCCGGATCACTCACCATTTCTTTACTGAGAG TGTCCCCTGGCAACTGCTTAACAAAATCCCAAGCTCAGGGGCTTCTCAGCATTTACCTAATTTCTGAAAGGCTCTTCTGAAAGGTGGTAT CTGTTCTTTCGTAGCACAGTGTTTATGTTTTTCCTGTTTATTGTTTTGGTTTTTTTTTTTTTTTTGCATTTGCACAGTATACACAAAAGA ATATGGGGTTGTAATGATCCTGAATAGCTCAAAAAAGGTTTTAGCATGGTCAAACAGGCTTATGGTTTAAAATGTGTTATTCTCTTCTTT GGGAATTAGCTAAATGATGCAATAAACCTGTTTTGTTTTAGAATGTCTAGGAATTAAACACTTTATGTTTACAGAATTGAGCTGCAGAAA GTGCAAGACATGCCAATTTGAGACACACGGTCTTCTAAGACTGAAGGATAAATTTAATGCATTTCAGAAACTAAACATCACAGCAAGCTC TATCTCTGAGCTATAATTTGTTTTTAATGCAAAGACACTAGTTTGATAATATATACTGTAATCCTGAAACATTTGTGTTACTTACCTTTG GAGGTAGAAATTATACCAATAAATTATTGCACCGTTAGTATTAGATTCTGTGTACCTTGGAAGTTATGTCATTAATATAGGCTGGTTCAT CAAATAAAGCAAAACCTTGCAATATCAGCTAGATTTACACTCCGGGACGTTGCCCAAAGGTAGGAAGAAAGCAGAGGGAAATATTTCAGT CATCATTTCCAAAGTCATTATCAAAATCTGTGAGGAAGTTTAATCTTCCAAAGAGTCAATGTCAGACATCAGGCCTCTGTTGCCTGCTTC TCTCGAGGCACTAGATTAGGAGTCTTCAATAAGAGACTTAACATGAGGTATATGGAAGATGAGGCACCGAGATAAGTTCATCATTAGGTG TGAGCACTGCTCACCCTTGCTGGCAAGTTCTCCTTAAGGGCCTGAAGCACAGGTGTCCAAAGAAAAGCGTTAAGTCCATCTTAATAGAAT CTATGTGGTATATGATGTGGTCAGCCCCTGGTCTGTGATCAGCAAGAACCTACAGCACAGATTATGCCCTGCCCACTTCAATGAATACCT ACTCTCCTCCATTCTCCATCACTTTTTTTGCTATCAAGAACTCCGGACCTTGCCCATGGAGAAGTTTAGAGAGGAACTCTTGTGGAGAGC TGGTTTATTTTCTGCCCTGTGCGACGAGTTTCAGCTGGCCAAGAAAGGAGTCAAGTTATTAAAAAGCATCACAATGTAGATCTCCAGGCT GGTTTTTTGTTTTTTGTTGTTAAGACTGGGGAAAGGGGGACTATTTATTCTGCCTTAAATCAATGGCAAATAAGTCAAGATGACATTTTG TGAATGTAGACTATGGATACACTCCTAATAGATTGATGTAGTCATAAAAGGGGGTCAAGTAGATGTTTTTCTGTTATGTAAGCAATAATT TTTCCGTGTCTTATTGAGTATGGCTAGCGATTATTTATTACATGCTAGATGGGTTCTTTGCATGTGGGTTCCATATAGGTGCAGAAATTT CCTCAGCCACTGGAGGGATTTCGACCATATTTGTCATTTGGATGAGCTGTTATTAGATTGAAATCTACACATCATTTCATTAAAAATTGT GCCTTAGAAAACGCAAAGCTGTTGCACATGGCGATAAATTATGGATGCAGTACATTGAAGAGAGATGAAGTCACTTCCAAGTTTCCAAGA >In-frame_RNF13_ENST00000344229_chr3_149589944_+_LIMCH1_ENST00000513024_chr4_41652408_+_4422nt CCCGCCCGGGGGCAGCCCGGCAGCCGAATCTTGGGCTACTCTGTCCCAACAGCCGGAGCAGATCAGACCGACCGGCCCTGCCCGCTCGGT CCCGCGCCCTCCAGACCCTACGGTCTCCGTTTCTAGGGGCACATGGTTAGCGGCAGGCGCCCACAGCCAATCCACTTTGCCAGCCTGCCC CTTCCTCTGCCAAGAGCAGCTTCTTCAGCCGCGCTCCAGTTCCGCAGACGCCTGCCCCACCCTGCTCTTCCCTTCCAGGGAAGACGGATC ACGCGGCCAAGAACGAGACTCGCAAACTGGGCATTTCTCCGAGCCGGGCTAGAGCAAGTAGCGAGACTCCGCGTGAGAGTGGGAAAGAGC CTTAACAGGCAACCATGTTGCCCAGTGGGTTTTCTGTGCCTTTGGGTGCGGACCAATGAGGCGCGTGGGGCGGGACTTCCGCTTCGCCTA GGTGTTGTCGTCCCTGCTAGTACTCCGGGCTGTGGGGGTCGGTGCGGATATTCAGTCATGAAATCAGGGTAGGGACTTCTCCCGCAGCGA CGCGGCTGGCAAGACTGTTTGTGTTGCGGGGGCCGGACTTCAAGAGAGAAAGAGAGAGTGGGCAGACATCGAAGCCAAACAGCAGTATCC CGGAAGCACTCATGCAACTTTGGTGGCGGCCACTCAGTTTTCTCTGCCAGTGTCTGGTGATTTTACAACGAGATGCTGCTCTCCATAGGG ATGCTCATGCTGTCAGCCACACAAGTCTACACCATCTTGACTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTGTAGAAGCAGACATT TTAGCATATAACTTTGAAAATGCATCTCAGACATTTGATGACCTCCCTGCAAGATTTGGTTATAGACTTCCAGCTGAAGGTTTAAAGGGT TTTTTGATTAACTCAAAACCAGAGAATGCCTGTGAACCCATAGTGCCTCCACCAGTAAAAGACAATTCATCTGGCACTTTCATCGTGTTA ATTAGAAGACTTGATTGTAATTTTGATATAAAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGTTCATAGAGAGGAGGAGAAGGAA AGAGAGTGTCCCACGGTGGCACCTGCCCACTCCTTAACCAAATCCCAGATGTTTGAAGGTGTGGCCAGAGTGCACGGGTCTCCACTGGAG CTGAAACAAGACAACGGTAGCATCGAGATCAACATAAAGAAGCCAAACTCTGTTCCCCAAGAGCTCGCAGCAACCACTGAGAAAACGGAA CCGAATAGTCAAGAGGACAAGAATGATGGTGGAAAATCAAGAAAAGGGAATATAGAACTTGCCTCATCAGAACCACAGCATTTTACAACA ACTGTGACTCGATGCAGCCCGACCGTGGCCTTTGTGGAATTTCCCTCCAGCCCCCAGCTGAAGAATGATGTGTCGGAAGAAAAAGACCAG AAGAAACCAGAAAATGAAATGAGTGGAAAGGTGGAGTTGGTGCTGTCACAAAAGGTGGTAAAGCCAAAATCTCCAGAACCCGAAGCAACG CTGACATTTCCATTTCTGGACAAAATGCCTGAAGCCAACCAACTACATTTGCCAAATCTCAATTCTCAAGAGTCGCCTGGCACTGCCAGT GTTCCGCTTAGAGTTCAGAACTCTTGGCGACGATCCCAGTTTTTCTCCCAGTCAGTGGATTCTCCAAGCAGTGAGAAGTCACCTGTTATG ACACCTTTTAAGTTCTGGGCATGGGACCCAGAAGAGGAGCGCAGGCGACAGGAAAAATGGCAACAGGAACAGGAACGTTTGCTCCAGGAG AGATACCAGAAGGAGCAGGACAAGCTGAAAGAAGAGTGGGAAAAGGCCCAAAAGGAGGTGGAAGAGGAAGAACGCAGATACTATGAGGAG GAGCGTAAGATAATTGAAGACACTGTGGTTCCATTTACTGTTTCTTCAAGTTCCGCTGACCAGCTGTCTACCTCTTCCTCCATGACTGAA GGCAGTGGGACAATGAATAAGATAGACCTGGGAAACTGTCAAGATGAAAAACAAGACAGAAGATGGAAGAAATCATTCCAGGGAGATGAC AGTGACTTATTGCTGAAGACTAGGGAAAGTGATCGACTGGAGGAGAAGGGCAGCCTAACTGAAGGGGCCTTGGCTCATTCTGGGAACCCT GTATCAAAAGGAGTCCATGAAGACCATCAGCTGGATACCGAGGCTGGGGCCCCACACTGTGGAACAAACCCACAGCTTGCTCAGGATCCA TCCCAGAATCAGCAGACATCAAATCCAACGCACAGTTCAGAAGATGTGAAGCCAAAAACCCTCCCGCTGGATAAAAGCATTAACCATCAG ATCGAGTCTCCCAGTGAAAGGCGGAAGTCTATAAGTGGAAAGAAGCTGTGCTCTTCCTGTGGGCTTCCTTTGGGTAAAGGAGCTGCAATG ATCATCGAGACCCTCAATCTCTATTTTCACATCCAGTGTTTCAGGTGTGGAATTTGTAAAGGCCAGCTTGGAGATGCAGTGAGTGGGACG GATGTTAGGATTCGAAATGGTCTCCTGAACTGTAATGATTGCTACATGCGATCCAGAAGTGCCGGGCAGCCTACAACATTGTGACACGGC TTTCAAGCTTCCGGATCACTCACCATTTCTTTACTGAGAGTGTCCCCTGGCAACTGCTTAACAAAATCCCAAGCTCAGGGGCTTCTCAGC ATTTACCTAATTTCTGAAAGGCTCTTCTGAAAGGTGGTATCTGTTCTTTCGTAGCACAGTGTTTATGTTTTTCCTGTTTATTGTTTTGGT TTTTTTTTTTTTTTTGCATTTGCACAGTATACACAAAAGAATATGGGGTTGTAATGATCCTGAATAGCTCAAAAAAGGTTTTAGCATGGT CAAACAGGCTTATGGTTTAAAATGTGTTATTCTCTTCTTTGGGAATTAGCTAAATGATGCAATAAACCTGTTTTGTTTTAGAATGTCTAG GAATTAAACACTTTATGTTTACAGAATTGAGCTGCAGAAAGTGCAAGACATGCCAATTTGAGACACACGGTCTTCTAAGACTGAAGGATA AATTTAATGCATTTCAGAAACTAAACATCACAGCAAGCTCTATCTCTGAGCTATAATTTGTTTTTAATGCAAAGACACTAGTTTGATAAT ATATACTGTAATCCTGAAACATTTGTGTTACTTACCTTTGGAGGTAGAAATTATACCAATAAATTATTGCACCGTTAGTATTAGATTCTG TGTACCTTGGAAGTTATGTCATTAATATAGGCTGGTTCATCAAATAAAGCAAAACCTTGCAATATCAGCTAGATTTACACTCCGGGACGT TGCCCAAAGGTAGGAAGAAAGCAGAGGGAAATATTTCAGTCATCATTTCCAAAGTCATTATCAAAATCTGTGAGGAAGTTTAATCTTCCA AAGAGTCAATGTCAGACATCAGGCCTCTGTTGCCTGCTTCTCTCGAGGCACTAGATTAGGAGTCTTCAATAAGAGACTTAACATGAGGTA TATGGAAGATGAGGCACCGAGATAAGTTCATCATTAGGTGTGAGCACTGCTCACCCTTGCTGGCAAGTTCTCCTTAAGGGCCTGAAGCAC AGGTGTCCAAAGAAAAGCGTTAAGTCCATCTTAATAGAATCTATGTGGTATATGATGTGGTCAGCCCCTGGTCTGTGATCAGCAAGAACC TACAGCACAGATTATGCCCTGCCCACTTCAATGAATACCTACTCTCCTCCATTCTCCATCACTTTTTTTGCTATCAAGAACTCCGGACCT TGCCCATGGAGAAGTTTAGAGAGGAACTCTTGTGGAGAGCTGGTTTATTTTCTGCCCTGTGCGACGAGTTTCAGCTGGCCAAGAAAGGAG TCAAGTTATTAAAAAGCATCACAATGTAGATCTCCAGGCTGGTTTTTTGTTTTTTGTTGTTAAGACTGGGGAAAGGGGGACTATTTATTC TGCCTTAAATCAATGGCAAATAAGTCAAGATGACATTTTGTGAATGTAGACTATGGATACACTCCTAATAGATTGATGTAGTCATAAAAG GGGGTCAAGTAGATGTTTTTCTGTTATGTAAGCAATAATTTTTCCGTGTCTTATTGAGTATGGCTAGCGATTATTTATTACATGCTAGAT GGGTTCTTTGCATGTGGGTTCCATATAGGTGCAGAAATTTCCTCAGCCACTGGAGGGATTTCGACCATATTTGTCATTTGGATGAGCTGT TATTAGATTGAAATCTACACATCATTTCATTAAAAATTGTGCCTTAGAAAACGCAAAGCTGTTGCACATGGCGATAAATTATGGATGCAG TACATTGAAGAGAGATGAAGTCACTTCCAAGTTTCCAAGACTTCTCATGGAGGTGTTTGCTGTTTTACAGGAAAAAATAAAAATAAAAAA |
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FusionGenePPI for RNF13_LIMCH1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RNF13 | UBE2D1, UBE2D2, UBE2D3, UBE2D4, UBE2E1, UBE2E3, UBE2N, LAMP2, CD63, PGRMC1, LMNB1, SNAPIN, ERN1, NXF1, VTI1B, STX12, LGALS8, LGALS9, AP3S2, AP3D1, HDGFRP3, AP3S1, TYK2, NR2F2, NR2F1, TSPAN3, CLCN7, CLEC11A, STAT5A, NES, MANSC1, RNF167, SPINT2, VIPR1, DCX, AP1S2 | LIMCH1 | ELAVL1, SH3KBP1, APP, HUWE1, CUTC, DIABLO, GABPA, KPNA1, NPM1, TRMT61A, RPA3, RPA2, RPA1, OTUD6B, KLHL15, RFC2, YES1, NAGK, GNB4, UNK, NTRK1, CEP120, ODF2, XPO1, CAPZA2, CDK2, MYH9, PPP1CB, IQGAP1, ANLN, MYO19, MYO18A, CDH1, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RNF13_LIMCH1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RNF13_LIMCH1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | LIMCH1 | C0236969 | Substance-Related Disorders | 1 | CTD_human |
Tgene | LIMCH1 | C0345967 | Malignant mesothelioma | 1 | CTD_human |