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Fusion gene ID: 31390 |
FusionGeneSummary for RNF11_CHD2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RNF11_CHD2 | Fusion gene ID: 31390 | Hgene | Tgene | Gene symbol | RNF11 | CHD2 | Gene ID | 26994 | 1826 |
| Gene name | ring finger protein 11 | DS cell adhesion molecule | |
| Synonyms | CGI-123|SID1669 | CHD2|CHD2-42|CHD2-52 | |
| Cytomap | 1p32.3 | 21q22.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | RING finger protein 11 | Down syndrome cell adhesion molecule | |
| Modification date | 20180522 | 20180519 | |
| UniProtAcc | Q9Y3C5 | O14647 | |
| Ensembl transtripts involved in fusion gene | ENST00000242719, ENST00000494873, | ENST00000394196, ENST00000557381, ENST00000420239, ENST00000536619, ENST00000554122, | |
| Fusion gene scores | * DoF score | 5 X 4 X 3=60 | 5 X 7 X 2=70 |
| # samples | 5 | 7 | |
| ** MAII score | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/70*10)=0 | |
| Context | PubMed: RNF11 [Title/Abstract] AND CHD2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | RNF11 | GO:0006511 | ubiquitin-dependent protein catabolic process | 14755250 |
| Hgene | RNF11 | GO:0051865 | protein autoubiquitination | 24105792 |
| Tgene | CHD2 | GO:0042327 | positive regulation of phosphorylation | 19196994 |
| Tgene | CHD2 | GO:0048842 | positive regulation of axon extension involved in axon guidance | 18585357 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BQ339506 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000242719 | ENST00000394196 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000242719 | ENST00000557381 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000242719 | ENST00000420239 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000242719 | ENST00000536619 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000242719 | ENST00000554122 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000494873 | ENST00000394196 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000494873 | ENST00000557381 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000494873 | ENST00000420239 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000494873 | ENST00000536619 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
| intron-intron | ENST00000494873 | ENST00000554122 | RNF11 | chr1 | 51704434 | - | CHD2 | chr15 | 93543460 | + |
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FusionProtFeatures for RNF11_CHD2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RNF11 | CHD2 |
| Essential component of a ubiquitin-editing proteincomplex, comprising also TNFAIP3, ITCH and TAX1BP1, that ensuresthe transient nature of inflammatory signaling pathways. Promotesthe association of TNFAIP3 to RIPK1 after TNF stimulation. TNFAIP3deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 andcatalyzes the formation of 'Lys-48'-polyubiquitin chains. Thisleads to RIPK1 proteasomal degradation and consequentlytermination of the TNF- or LPS-mediated activation of NF-kappa-B.Recruits STAMBP to the E3 ubiquitin-ligase SMURF2 forubiquitination, leading to its degradation by the 26S proteasome.{ECO:0000269|PubMed:14755250}. | DNA-binding helicase that specifically binds to thepromoter of target genes, leading to chromatin remodeling,possibly by promoting deposition of histone H3.3. Involved inmyogenesis via interaction with MYOD1: binds to myogenic generegulatory sequences and mediates incorporation of histone H3.3prior to the onset of myogenic gene expression, promoting theirexpression (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RNF11_CHD2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RNF11_CHD2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RNF11_CHD2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RNF11_CHD2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | CHD2 | C0014544 | Epilepsy | 1 | CTD_human |
| Tgene | CHD2 | C3809278 | EPILEPTIC ENCEPHALOPATHY, CHILDHOOD-ONSET | 1 | UNIPROT |
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