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Fusion gene ID: 30823 |
FusionGeneSummary for RBP4_ZDHHC17 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RBP4_ZDHHC17 | Fusion gene ID: 30823 | Hgene | Tgene | Gene symbol | RBP4 | ZDHHC17 | Gene ID | 5950 | 23390 |
Gene name | retinol binding protein 4 | zinc finger DHHC-type containing 17 | |
Synonyms | MCOPCB10|RDCCAS | DHHC-17|HIP14|HIP3|HSPC294|HYPH | |
Cytomap | 10q23.33 | 12q21.2 | |
Type of gene | protein-coding | protein-coding | |
Description | retinol-binding protein 4PRBPRBPplasma retinol-binding proteinretinol binding protein 4, plasmaretinol-binding protein 4, interstitial | palmitoyltransferase ZDHHC17huntingtin interacting protein 14huntingtin interacting protein 3huntingtin yeast partner Hhuntingtin-interacting protein Hputative MAPK-activating protein PM11putative NF-kappa-B-activating protein 205zinc finger DHHC d | |
Modification date | 20180527 | 20180522 | |
UniProtAcc | P02753 | Q8IUH5 | |
Ensembl transtripts involved in fusion gene | ENST00000371464, ENST00000371467, ENST00000371469, | ENST00000359019, ENST00000334822, ENST00000426126, ENST00000550789, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 6 X 8 X 3=144 |
# samples | 2 | 8 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(8/144*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RBP4 [Title/Abstract] AND ZDHHC17 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RBP4 | GO:0030277 | maintenance of gastrointestinal epithelium | 10944490 |
Hgene | RBP4 | GO:0032526 | response to retinoic acid | 571335 |
Hgene | RBP4 | GO:0042593 | glucose homeostasis | 17003346 |
Tgene | ZDHHC17 | GO:0018345 | protein palmitoylation | 23034182 |
Tgene | ZDHHC17 | GO:0042953 | lipoprotein transport | 15603740 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AI444579 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000371464 | ENST00000359019 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371464 | ENST00000334822 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371464 | ENST00000426126 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371464 | ENST00000550789 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371467 | ENST00000359019 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371467 | ENST00000334822 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371467 | ENST00000426126 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371467 | ENST00000550789 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371469 | ENST00000359019 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371469 | ENST00000334822 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371469 | ENST00000426126 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
intron-intron | ENST00000371469 | ENST00000550789 | RBP4 | chr10 | 95360488 | + | ZDHHC17 | chr12 | 77230681 | + |
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FusionProtFeatures for RBP4_ZDHHC17 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
RBP4 | ZDHHC17 |
Retinol-binding protein that mediates retinol transportin blood plasma (PubMed:5541771). Delivers retinol from the liverstores to the peripheral tissues (Probable). Transfers the boundall-trans retinol to STRA6, that then facilitates retinoltransport across the cell membrane (PubMed:22665496).{ECO:0000269|PubMed:22665496, ECO:0000305,ECO:0000305|PubMed:5541771}. | Palmitoyltransferase specific for a subset of neuronalproteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HTT(PubMed:15603740, PubMed:15489887, PubMed:19139280,PubMed:28757145). Palmitoylates MPP1 in erythrocytes(PubMed:22496366). May be involved in the sorting or targeting ofcritical proteins involved in the initiating events of endocytosisat the plasma membrane (PubMed:12393793). May play a role inMg(2+) transport (PubMed:18794299). {ECO:0000269|PubMed:12393793,ECO:0000269|PubMed:15489887, ECO:0000269|PubMed:15603740,ECO:0000269|PubMed:18794299, ECO:0000269|PubMed:19139280,ECO:0000269|PubMed:22496366, ECO:0000269|PubMed:28757145}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RBP4_ZDHHC17 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RBP4_ZDHHC17 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RBP4_ZDHHC17 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | RBP4 | P02753 | DB00755 | Tretinoin | Retinol-binding protein 4 | small molecule | approved|investigational|nutraceutical |
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RelatedDiseases for RBP4_ZDHHC17 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RBP4 | C3554593 | RETINAL DYSTROPHY, IRIS COLOBOMA, AND COMEDOGENIC ACNE SYNDROME | 2 | ORPHANET;UNIPROT |
Hgene | RBP4 | C0000786 | Spontaneous abortion | 1 | CTD_human |
Hgene | RBP4 | C0018801 | Heart failure | 1 | CTD_human |
Hgene | RBP4 | C0022658 | Kidney Diseases | 1 | CTD_human |
Hgene | RBP4 | C0023896 | Alcoholic Liver Diseases | 1 | CTD_human |
Hgene | RBP4 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | RBP4 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Hgene | RBP4 | C0027540 | Necrosis | 1 | CTD_human |
Hgene | RBP4 | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |
Hgene | RBP4 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Hgene | RBP4 | C0042842 | Vitamin A Deficiency | 1 | CTD_human |
Hgene | RBP4 | C0152455 | Keratomalacia | 1 | CTD_human |
Hgene | RBP4 | C4225330 | MICROPHTHALMIA, ISOLATED, WITH COLOBOMA 10 | 1 | UNIPROT |