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Fusion gene ID: 30121 |
FusionGeneSummary for RABGAP1_PBX3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RABGAP1_PBX3 | Fusion gene ID: 30121 | Hgene | Tgene | Gene symbol | RABGAP1 | PBX3 | Gene ID | 23637 | 5090 |
| Gene name | RAB GTPase activating protein 1 | PBX homeobox 3 | |
| Synonyms | GAPCENA|TBC1D11 | - | |
| Cytomap | 9q33.2-q33.3 | 9q33.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | rab GTPase-activating protein 1GAP and centrosome-associated proteinRab6 GTPase activating protein, GAPCenATBC1 domain family, member 11rab6 GTPase activating protein (GAP and centrosome-associated)rab6 GTPase-activating protein GAPCenA | pre-B-cell leukemia transcription factor 3homeobox protein PBX3pre-B-cell leukemia homeobox 3 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q9Y3P9 | P40426 | |
| Ensembl transtripts involved in fusion gene | ENST00000373647, ENST00000493854, ENST00000373643, | ENST00000342287, ENST00000373487, ENST00000373489, ENST00000373483, ENST00000447726, ENST00000538998, | |
| Fusion gene scores | * DoF score | 8 X 6 X 6=288 | 7 X 4 X 5=140 |
| # samples | 8 | 8 | |
| ** MAII score | log2(8/288*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/140*10)=-0.807354922057604 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: RABGAP1 [Title/Abstract] AND PBX3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Transcription factor involved fusion gene, inframe and retained DNA-binding domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | RABGAP1 | GO:0043087 | regulation of GTPase activity | 17562788 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SKCM | TCGA-EB-A82C-01A | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000373647 | ENST00000342287 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| In-frame | ENST00000373647 | ENST00000373487 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| In-frame | ENST00000373647 | ENST00000373489 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| 5CDS-5UTR | ENST00000373647 | ENST00000373483 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| 5CDS-5UTR | ENST00000373647 | ENST00000447726 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| 5CDS-3UTR | ENST00000373647 | ENST00000538998 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3CDS | ENST00000493854 | ENST00000342287 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3CDS | ENST00000493854 | ENST00000373487 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3CDS | ENST00000493854 | ENST00000373489 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-5UTR | ENST00000493854 | ENST00000373483 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-5UTR | ENST00000493854 | ENST00000447726 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3UTR | ENST00000493854 | ENST00000538998 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3CDS | ENST00000373643 | ENST00000342287 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3CDS | ENST00000373643 | ENST00000373487 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3CDS | ENST00000373643 | ENST00000373489 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-5UTR | ENST00000373643 | ENST00000373483 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-5UTR | ENST00000373643 | ENST00000447726 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
| intron-3UTR | ENST00000373643 | ENST00000538998 | RABGAP1 | chr9 | 125782738 | + | PBX3 | chr9 | 128691934 | + |
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FusionProtFeatures for RABGAP1_PBX3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RABGAP1 | PBX3 |
| May act as a GTPase-activating protein of RAB6A. Mayplay a role in microtubule nucleation by centrosome. Mayparticipate in a RAB6A-mediated pathway involved in the metaphase-anaphase transition. {ECO:0000269|PubMed:10202141,ECO:0000269|PubMed:16395330}. | Transcriptional activator that binds the sequence 5'-ATCAATCAA-3'. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | RABGAP1 | chr9:125782738 | chr9:128691934 | ENST00000373647 | + | 13 | 26 | 142_298 | 598 | 1070 | Domain | PID |
| Tgene | >PBX3 | chr9:125782738 | chr9:128691934 | ENST00000373483 | + | 1 | 8 | 130_138 | -9 | 254 | Compositional bias | Note=Poly-Ala |
| Tgene | >PBX3 | chr9:125782738 | chr9:128691934 | ENST00000447726 | + | 2 | 9 | 130_138 | 97 | 360 | Compositional bias | Note=Poly-Ala |
| Tgene | >PBX3 | chr9:125782738 | chr9:128691934 | ENST00000342287 | + | 2 | 8 | 235_297 | 172 | 764 | DNA binding | Homeobox%3B TALE-type |
| Tgene | >PBX3 | chr9:125782738 | chr9:128691934 | ENST00000373483 | + | 1 | 8 | 235_297 | -9 | 254 | DNA binding | Homeobox%3B TALE-type |
| Tgene | >PBX3 | chr9:125782738 | chr9:128691934 | ENST00000373489 | + | 2 | 9 | 235_297 | 172 | 435 | DNA binding | Homeobox%3B TALE-type |
| Tgene | >PBX3 | chr9:125782738 | chr9:128691934 | ENST00000447726 | + | 2 | 9 | 235_297 | 97 | 360 | DNA binding | Homeobox%3B TALE-type |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >RABGAP1 | chr9:125782738 | chr9:128691934 | ENST00000373647 | + | 13 | 26 | 798_1047 | 598 | 1070 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >RABGAP1 | chr9:125782738 | chr9:128691934 | ENST00000373647 | + | 13 | 26 | 566_752 | 598 | 1070 | Domain | Rab-GAP TBC |
| Tgene | PBX3 | chr9:125782738 | chr9:128691934 | ENST00000342287 | + | 2 | 8 | 130_138 | 172 | 764 | Compositional bias | Note=Poly-Ala |
| Tgene | PBX3 | chr9:125782738 | chr9:128691934 | ENST00000373489 | + | 2 | 9 | 130_138 | 172 | 435 | Compositional bias | Note=Poly-Ala |
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FusionGeneSequence for RABGAP1_PBX3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000342287_chr9_128691934_+_778aa MDDKASVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKIVGNGSEQQLQKELADVLMDPPMDDQPGEKELVKRSQLDG EGDGPLSNQLSASSTINPVPLVGLQKPEMSLPVKPGQGDSEASSPFTPVADEDSVVFSKLTYLGCASVNAPRSEVEALRMMSILRSQCQI SLDVTLSVPNVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFRCEIQEAVSRILYSFATAFRRS AKQTPLSATAAPQTPDSDIFTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVIYVQQTTNKELAIERCFGLLLSPGKDVRNS DMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQEPVRFLLETKVRVCSPNERLFWPFSKRSTTE NFFLKLKQIKQRERKNNTDTLYEVVCLESESERERRKTTASPSVRLPQSGSQSSVIPSPPEDDEEEDNDEPLLSGSGDVSKECAEKILET WGELLSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAGCHNNDHLVEKYRILITKACNEFTTHVMNLLREQSRTRPISPKEIERMVG IIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000373487_chr9_128691934_+_882aa MDDKASVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKIVGNGSEQQLQKELADVLMDPPMDDQPGEKELVKRSQLDG EGDGPLSNQLSASSTINPVPLVGLQKPEMSLPVKPGQGDSEASSPFTPVADEDSVVFSKLTYLGCASVNAPRSEVEALRMMSILRSQCQI SLDVTLSVPNVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFRCEIQEAVSRILYSFATAFRRS AKQTPLSATAAPQTPDSDIFTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVIYVQQTTNKELAIERCFGLLLSPGKDVRNS DMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQEPVRFLLETKVRVCSPNERLFWPFSKRSTTE NFFLKLKQIKQRERKNNTDTLYEVVCLESESERERRKTTASPSVRLPQSGSQSSVIPSPPEDDEEEDNDEPLLSGSGDVSKECAEKILET WGELLSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAGCHNNDHLVEKYRILITKACNEFTTHVMNLLREQSRTRPISPKEIERMVG IIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQSLVKDPKERGSKG SDIQPTSVVSNWFGNKRIRYKKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGSSGSFNLPNSGDMFMNMQSLNGDSYQ >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000373489_chr9_128691934_+_861aa MDDKASVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKIVGNGSEQQLQKELADVLMDPPMDDQPGEKELVKRSQLDG EGDGPLSNQLSASSTINPVPLVGLQKPEMSLPVKPGQGDSEASSPFTPVADEDSVVFSKLTYLGCASVNAPRSEVEALRMMSILRSQCQI SLDVTLSVPNVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFRCEIQEAVSRILYSFATAFRRS AKQTPLSATAAPQTPDSDIFTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVIYVQQTTNKELAIERCFGLLLSPGKDVRNS DMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQEPVRFLLETKVRVCSPNERLFWPFSKRSTTE NFFLKLKQIKQRERKNNTDTLYEVVCLESESERERRKTTASPSVRLPQSGSQSSVIPSPPEDDEEEDNDEPLLSGSGDVSKECAEKILET WGELLSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAGCHNNDHLVEKYRILITKACNEFTTHVMNLLREQSRTRPISPKEIERMVG IIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK KNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGSSGSFNLPNSGDMFMNMQSLNGDSYQGSQVGANVQSQVDTLRHVINQ |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000342287_chr9_128691934_+_2334nt ATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGG CAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTG CAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACCAGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGT GAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCATTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGC CTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTTTCACACCAGTGGCCGATGAGGACAGCGTAGTTTTCAGTAAACTG ACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTGAAGTGGAAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATT TCACTAGATGTTACCCTTTCAGTGCCGAATGTGTCTGAAGGAATTGTGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTAC CCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTCCTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCA GAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTGTAAGCCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCT GCCAAGCAGACCCCACTTTCAGCCACTGCTGCACCCCAGACTCCTGACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAA GATGATGGTAAAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACAGACAGTGCTTTAAACTACGCCAAGGAATTGATAAGAAGATTGTC ATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGTGTTTTGGTCTTCTCCTTAGTCCAGGAAAAGATGTACGAAATAGT GACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTTCAGATGGAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCA CATTTTCAAGTTGTAAATGAAGAAACTCCTAAAGATAAAGTCCTGTTTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAG CCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAA AATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGAATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAA TCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCA GAAGATGATGAAGAGGAAGATAATGATGAACCTCTCCTGAGTGGATCTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACA TGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGACCGAAGCAGTTGTCATCCTTAGTAAGAAACGGTGTCCCTGAAGCT CTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATAACAATGACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGCATGT AATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTAGAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGC ATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAAGCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGAT GCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCTTGAATGAATATTTTTACTCACACCTCAGCAACCCCTACCCCAGT GAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTGTCACAGGTATCCAATTGGTTTGGCAACAAACGAATCAGGTACAAG AAGAACATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAAAGACGGCCGTGACAGCTGCACACGCAGTAGCAGCAGCTGTGCAG >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000373487_chr9_128691934_+_2646nt ATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGG CAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTG CAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACCAGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGT GAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCATTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGC CTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTTTCACACCAGTGGCCGATGAGGACAGCGTAGTTTTCAGTAAACTG ACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTGAAGTGGAAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATT TCACTAGATGTTACCCTTTCAGTGCCGAATGTGTCTGAAGGAATTGTGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTAC CCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTCCTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCA GAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTGTAAGCCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCT GCCAAGCAGACCCCACTTTCAGCCACTGCTGCACCCCAGACTCCTGACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAA GATGATGGTAAAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACAGACAGTGCTTTAAACTACGCCAAGGAATTGATAAGAAGATTGTC ATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGTGTTTTGGTCTTCTCCTTAGTCCAGGAAAAGATGTACGAAATAGT GACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTTCAGATGGAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCA CATTTTCAAGTTGTAAATGAAGAAACTCCTAAAGATAAAGTCCTGTTTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAG CCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAA AATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGAATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAA TCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCA GAAGATGATGAAGAGGAAGATAATGATGAACCTCTCCTGAGTGGATCTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACA TGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGACCGAAGCAGTTGTCATCCTTAGTAAGAAACGGTGTCCCTGAAGCT CTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATAACAATGACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGCATGT AATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTAGAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGC ATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAAGCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGAT GCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCTTGAATGAATATTTTTACTCACACCTCAGCAACCCCTACCCCAGT GAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTGTCACAGAGTCTTGTAAAGGATCCAAAAGAAAGAGGGAGCAAAGGT TCTGACATCCAGCCAACTAGCGTGGTATCCAATTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATTGGCAAGTTTCAGGAAGAA GCCAACCTCTATGCTGCAAAGACGGCCGTGACAGCTGCACACGCAGTAGCAGCAGCTGTGCAGAACAACCAGACCAATTCGCCCACCACA CCAAATTCCGGTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAA GGGTCCCAAGTCGGAGCCAATGTGCAATCACAGGTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGA GGAAATTCACTGTACAGTCCACATAATTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACAGAA >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000373489_chr9_128691934_+_2583nt ATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGG CAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTG CAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACCAGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGT GAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCATTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGC CTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTTTCACACCAGTGGCCGATGAGGACAGCGTAGTTTTCAGTAAACTG ACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTGAAGTGGAAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATT TCACTAGATGTTACCCTTTCAGTGCCGAATGTGTCTGAAGGAATTGTGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTAC CCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTCCTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCA GAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTGTAAGCCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCT GCCAAGCAGACCCCACTTTCAGCCACTGCTGCACCCCAGACTCCTGACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAA GATGATGGTAAAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACAGACAGTGCTTTAAACTACGCCAAGGAATTGATAAGAAGATTGTC ATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGTGTTTTGGTCTTCTCCTTAGTCCAGGAAAAGATGTACGAAATAGT GACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTTCAGATGGAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCA CATTTTCAAGTTGTAAATGAAGAAACTCCTAAAGATAAAGTCCTGTTTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAG CCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAA AATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGAATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAA TCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCA GAAGATGATGAAGAGGAAGATAATGATGAACCTCTCCTGAGTGGATCTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACA TGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGACCGAAGCAGTTGTCATCCTTAGTAAGAAACGGTGTCCCTGAAGCT CTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATAACAATGACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGCATGT AATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTAGAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGC ATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAAGCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGAT GCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCTTGAATGAATATTTTTACTCACACCTCAGCAACCCCTACCCCAGT GAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTGTCACAGGTATCCAATTGGTTTGGCAACAAACGAATCAGGTACAAG AAGAACATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAAAGACGGCCGTGACAGCTGCACACGCAGTAGCAGCAGCTGTGCAG AACAACCAGACCAATTCGCCCACCACACCAAATTCCGGTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATG CAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAATCACAGGTGGATACCCTCCGTCATGTTATCAATCAG ACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACT |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000342287_chr9_128691934_+_4058nt GGGGACAGGGCGGTTTGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAGCGGCGGGCGGCGGAGGAGGAGACGGCAGGTCGGGCATT AAAAAATATTTAATCATTCATGTGTTGAGACTCATTCTTGAGTTATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACT CAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGA AAACAGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACC AGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCA TTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGCCTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTT TCACACCAGTGGCCGATGAGGACAGCGTAGTTTTCAGTAAACTGACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTGAAGTGG AAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATTTCACTAGATGTTACCCTTTCAGTGCCGAATGTGTCTGAAGGAATTG TGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTC CTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCAGAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTG TAAGCCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCTGCCAAGCAGACCCCACTTTCAGCCACTGCTGCACCCCAGACTCCTG ACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTAAAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACA GACAGTGCTTTAAACTACGCCAAGGAATTGATAAGAAGATTGTCATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGT GTTTTGGTCTTCTCCTTAGTCCAGGAAAAGATGTACGAAATAGTGACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTTCAGATG GAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAGATAAAGTCCTGT TTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAGCCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTA ATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAAAATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGA ATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCC TGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCAGAAGATGATGAAGAGGAAGATAATGATGAACCTCTCCTGAGTGGAT CTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGAC CGAAGCAGTTGTCATCCTTAGTAAGAAACGGTGTCCCTGAAGCTCTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATAACAATG ACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGCATGTAATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTA GAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGCATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAA GCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCT TGAATGAATATTTTTACTCACACCTCAGCAACCCCTACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTGT CACAGGTATCCAATTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAA AGACGGCCGTGACAGCTGCACACGCAGTAGCAGCAGCTGTGCAGAACAACCAGACCAATTCGCCCACCACACCAAATTCCGGTGGATACC CTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAATGCTAATGGA GGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACAGAAGGCCCAGGAAGTGTGCACTCGGATACCTCTAACTAATCTCTG GCCACACTTTTCCCTGAGCTACATGCCTTGATAAGTGCATTCAGAGCAATAGGAGGAAAAGGAAAGCGTTTTTGTAGCCCACCATCTACA GCTTTACTGTAAAACCTTGTCTTATTCGAGAACTTGGTAAATCTGTTTTTTAAGGAATCATAATCATTTGTATTTATACTTAAAAACACA CAATGTTAAAAAAAATAAAGCACTTTATCCAATTAGGCCAAGATTTAACATTGTTGACAGTCCTGTAGCTATTTTATCATAATTTATTAT CAATATTTTACATTAATGGTTTCACAGTTGCCAATTACTTGGCCTTAAGGGTAAAAAGTACAATATACACTAAACCTCAACCGTTAAAGC AGATGCAAAAATTCACCTCACCTAAATTGAACTTCTTGCATATTTCCATTACTGACTTGGATTGTCTTTCTTTCATATCACTAATGGAGT TGGAATAAAGAGCTGTTTGCCTATCCCTGTTAATGATGGTTGTGTTTAAGAATCTTCCTCGTCACGTTTGTGTTCAGATCTCTTATGTTA TAATTAGATCAGAGACTGGTAGCATCGTTTCTCTCTCTGAAAGCACCAGTGCCCAGAGTCTGCTCGGTAATAAAATTATGGATCCAGATT GTTCTGAGAGACGAAGATACTTGCTGCTGATAGAGGTGAAAACGAGATTGATCCGTCTGGGGTTTTACGGTGTGCACTGGGTGCTGCACA GACTTGTCAAGGTTTGCTACGTCCTCTGGGCATCTGCAAAAGGCCCTGCTCTCTGGAGTGTTGTATATAGTGTAGCAAAAGAGTATTTAT ACATCCCACCAATCAAAACACAGCTTTATTACCTCATGCGAACTCATACAAACCAATAGAATTTCAACATGTTCTGTAGCTTAGAGTGCT CACTTACTACCTCTGAACAATACTCACGCTGTAGTTTGTCTCTTTCTTATCTTTTTGCATCTTGTAATTAACTCTTTGTTTCCCTTCATA AAATGTAATGTACATTGTAATCTTTTAAAAGAAAAATCAGGGTTGCACTTGCAACTTTTAAAAAACCGAGTGTGGAAACATTGGGTCTTA ATTCAACACAGGATCGGTAAAACTGTTGTAAATACTGAGAAACATTTTGAATGTTCTTCATCTTATTACTAATCCATGCAAAAAAAAAAA AAAAAGCAGCGACTAATTGTGATGCATTCAGATTTCAGTATTCAGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTCTCCTTTCTC TCTTTTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAATAATTTGTGGCGGTGATTCTAATGTATTAAAAACGTTTCGTGTT CCTTTCTAACTGGATTACACCCTGGATTGAAAAAGTCTTCCTCGTGGTAGTTATATGTAGTTTCAAACATGAATAAACTTTTTGCTTTCA >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000373487_chr9_128691934_+_4234nt GGGGACAGGGCGGTTTGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAGCGGCGGGCGGCGGAGGAGGAGACGGCAGGTCGGGCATT AAAAAATATTTAATCATTCATGTGTTGAGACTCATTCTTGAGTTATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACT CAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGA AAACAGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACC AGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCA TTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGCCTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTT TCACACCAGTGGCCGATGAGGACAGCGTAGTTTTCAGTAAACTGACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTGAAGTGG AAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATTTCACTAGATGTTACCCTTTCAGTGCCGAATGTGTCTGAAGGAATTG TGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTC CTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCAGAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTG TAAGCCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCTGCCAAGCAGACCCCACTTTCAGCCACTGCTGCACCCCAGACTCCTG ACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTAAAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACA GACAGTGCTTTAAACTACGCCAAGGAATTGATAAGAAGATTGTCATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGT GTTTTGGTCTTCTCCTTAGTCCAGGAAAAGATGTACGAAATAGTGACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTTCAGATG GAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAGATAAAGTCCTGT TTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAGCCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTA ATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAAAATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGA ATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCC TGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCAGAAGATGATGAAGAGGAAGATAATGATGAACCTCTCCTGAGTGGAT CTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGAC CGAAGCAGTTGTCATCCTTAGTAAGAAACGGTGTCCCTGAAGCTCTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATAACAATG ACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGCATGTAATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTA GAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGCATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAA GCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCT TGAATGAATATTTTTACTCACACCTCAGCAACCCCTACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTGT CACAGAGTCTTGTAAAGGATCCAAAAGAAAGAGGGAGCAAAGGTTCTGACATCCAGCCAACTAGCGTGGTATCCAATTGGTTTGGCAACA AACGAATCAGGTACAAGAAGAACATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAAAGACGGCCGTGACAGCTGCACACGCAG TAGCAGCAGCTGTGCAGAACAACCAGACCAATTCGCCCACCACACCAAATTCCGGTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGG ACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAATCACAGGTGGATACCCTCC GTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAATGCTAATGGAGGCT GGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACAGAAGGCCCAGGAAGTGTGCACTCGGATACCTCTAACTAATCTCTGGCCA CACTTTTCCCTGAGCTACATGCCTTGATAAGTGCATTCAGAGCAATAGGAGGAAAAGGAAAGCGTTTTTGTAGCCCACCATCTACAGCTT TACTGTAAAACCTTGTCTTATTCGAGAACTTGGTAAATCTGTTTTTTAAGGAATCATAATCATTTGTATTTATACTTAAAAACACACAAT GTTAAAAAAAATAAAGCACTTTATCCAATTAGGCCAAGATTTAACATTGTTGACAGTCCTGTAGCTATTTTATCATAATTTATTATCAAT ATTTTACATTAATGGTTTCACAGTTGCCAATTACTTGGCCTTAAGGGTAAAAAGTACAATATACACTAAACCTCAACCGTTAAAGCAGAT GCAAAAATTCACCTCACCTAAATTGAACTTCTTGCATATTTCCATTACTGACTTGGATTGTCTTTCTTTCATATCACTAATGGAGTTGGA ATAAAGAGCTGTTTGCCTATCCCTGTTAATGATGGTTGTGTTTAAGAATCTTCCTCGTCACGTTTGTGTTCAGATCTCTTATGTTATAAT TAGATCAGAGACTGGTAGCATCGTTTCTCTCTCTGAAAGCACCAGTGCCCAGAGTCTGCTCGGTAATAAAATTATGGATCCAGATTGTTC TGAGAGACGAAGATACTTGCTGCTGATAGAGGTGAAAACGAGATTGATCCGTCTGGGGTTTTACGGTGTGCACTGGGTGCTGCACAGACT TGTCAAGGTTTGCTACGTCCTCTGGGCATCTGCAAAAGGCCCTGCTCTCTGGAGTGTTGTATATAGTGTAGCAAAAGAGTATTTATACAT CCCACCAATCAAAACACAGCTTTATTACCTCATGCGAACTCATACAAACCAATAGAATTTCAACATGTTCTGTAGCTTAGAGTGCTCACT TACTACCTCTGAACAATACTCACGCTGTAGTTTGTCTCTTTCTTATCTTTTTGCATCTTGTAATTAACTCTTTGTTTCCCTTCATAAAAT GTAATGTACATTGTAATCTTTTAAAAGAAAAATCAGGGTTGCACTTGCAACTTTTAAAAAACCGAGTGTGGAAACATTGGGTCTTAATTC AACACAGGATCGGTAAAACTGTTGTAAATACTGAGAAACATTTTGAATGTTCTTCATCTTATTACTAATCCATGCAAAAAAAAAAAAAAA AGCAGCGACTAATTGTGATGCATTCAGATTTCAGTATTCAGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTCTCCTTTCTCTCTT TTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAATAATTTGTGGCGGTGATTCTAATGTATTAAAAACGTTTCGTGTTCCTT TCTAACTGGATTACACCCTGGATTGAAAAAGTCTTCCTCGTGGTAGTTATATGTAGTTTCAAACATGAATAAACTTTTTGCTTTCATGAT >In-frame_RABGAP1_ENST00000373647_chr9_125782738_+_PBX3_ENST00000373489_chr9_128691934_+_3898nt GGGGACAGGGCGGTTTGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAGCGGCGGGCGGCGGAGGAGGAGACGGCAGGTCGGGCATT AAAAAATATTTAATCATTCATGTGTTGAGACTCATTCTTGAGTTATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACT CAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGA AAACAGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACC AGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCA TTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGCCTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTT TCACACCAGTGGCCGATGAGGACAGCGTAGTTTTCAGTAAACTGACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTGAAGTGG AAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATTTCACTAGATGTTACCCTTTCAGTGCCGAATGTGTCTGAAGGAATTG TGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTC CTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCAGAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTG TAAGCCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCTGCCAAGCAGACCCCACTTTCAGCCACTGCTGCACCCCAGACTCCTG ACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTAAAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACA GACAGTGCTTTAAACTACGCCAAGGAATTGATAAGAAGATTGTCATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGT GTTTTGGTCTTCTCCTTAGTCCAGGAAAAGATGTACGAAATAGTGACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTTCAGATG GAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAGATAAAGTCCTGT TTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAGCCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTA ATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAAAATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGA ATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCC TGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCAGAAGATGATGAAGAGGAAGATAATGATGAACCTCTCCTGAGTGGAT CTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGAC CGAAGCAGTTGTCATCCTTAGTAAGAAACGGTGTCCCTGAAGCTCTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATAACAATG ACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGCATGTAATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTA GAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGCATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAA GCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCT TGAATGAATATTTTTACTCACACCTCAGCAACCCCTACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTGT CACAGGTATCCAATTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAA AGACGGCCGTGACAGCTGCACACGCAGTAGCAGCAGCTGTGCAGAACAACCAGACCAATTCGCCCACCACACCAAATTCCGGTTCTTCTG GTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCA ATGTGCAATCACAGGTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTC CACATAATTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACAGAAGGCCCAGGAAGTGTGCACT CGGATACCTCTAACTAATCTCTGGCCACACTTTTCCCTGAGCTACATGCCTTGATAAGTGCATTCAGAGCAATAGGAGGAAAAGGAAAGC GTTTTTGTAGCCCACCATCTACAGCTTTACTGTAAAACCTTGTCTTATTCGAGAACTTGGTAAATCTGTTTTTTAAGGAATCATAATCAT TTGTATTTATACTTAAAAACACACAATGTTAAAAAAAATAAAGCACTTTATCCAATTAGGCCAAGATTTAACATTGTTGACAGTCCTGTA GCTATTTTATCATAATTTATTATCAATATTTTACATTAATGGTTTCACAGTTGCCAATTACTTGGCCTTAAGGGTAAAAAGTACAATATA CACTAAACCTCAACCGTTAAAGCAGATGCAAAAATTCACCTCACCTAAATTGAACTTCTTGCATATTTCCATTACTGACTTGGATTGTCT TTCTTTCATATCACTAATGGAGTTGGAATAAAGAGCTGTTTGCCTATCCCTGTTAATGATGGTTGTGTTTAAGAATCTTCCTCGTCACGT TTGTGTTCAGATCTCTTATGTTATAATTAGATCAGAGACTGGTAGCATCGTTTCTCTCTCTGAAAGCACCAGTGCCCAGAGTCTGCTCGG TAATAAAATTATGGATCCAGATTGTTCTGAGAGACGAAGATACTTGCTGCTGATAGAGGTGAAAACGAGATTGATCCGTCTGGGGTTTTA CGGTGTGCACTGGGTGCTGCACAGACTTGTCAAGGTTTGCTACGTCCTCTGGGCATCTGCAAAAGGCCCTGCTCTCTGGAGTGTTGTATA TAGTGTAGCAAAAGAGTATTTATACATCCCACCAATCAAAACACAGCTTTATTACCTCATGCGAACTCATACAAACCAATAGAATTTCAA CATGTTCTGTAGCTTAGAGTGCTCACTTACTACCTCTGAACAATACTCACGCTGTAGTTTGTCTCTTTCTTATCTTTTTGCATCTTGTAA TTAACTCTTTGTTTCCCTTCATAAAATGTAATGTACATTGTAATCTTTTAAAAGAAAAATCAGGGTTGCACTTGCAACTTTTAAAAAACC GAGTGTGGAAACATTGGGTCTTAATTCAACACAGGATCGGTAAAACTGTTGTAAATACTGAGAAACATTTTGAATGTTCTTCATCTTATT |
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FusionGenePPI for RABGAP1_PBX3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| RABGAP1 | RAB6A, GABARAPL1, RABGAP1L, DISC1, ELAVL1, MAP1LC3A, CARM1, VCP, RAB4A, COPE, COPG1, KIF5B, SENP1, SENP5, TEX35, HOXC4, LIMS1, KIR2DS2, CCDC68, TUFT1, CORO1A, WIPI2, ORC2, NTRK1, STAT3, CCDC53, VIPR2, TRIM11, GGA1, CD79B, DLK2, TMEM206, MANSC1, TSKS | PBX3 | AGTRAP, HOXA9, HOXB8, ZNHIT3, RABAC1, MAGEA1, TPM3, TRAF1, ARL6IP1, MAGEC2, TRIM44, MAL2, FSD2, LMX1B, MAB21L1, MEIS2, MAB21L2, PTEN, FOXE1, FAM222A, C5orf24, C16orf71, VWA5A, CCDC120, TMOD3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RABGAP1_PBX3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RABGAP1_PBX3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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