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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 29747

FusionGeneSummary for PWP2_SFSWAP

check button Fusion gene summary
Fusion gene informationFusion gene name: PWP2_SFSWAP
Fusion gene ID: 29747
HgeneTgene
Gene symbol

PWP2

SFSWAP

Gene ID

5822

6433

Gene namePWP2, small subunit processome componentsplicing factor SWAP
SynonymsEHOC-17|PWP2H|UTP1SFRS8|SWAP
Cytomap

21q22.3

12q24.33

Type of geneprotein-codingprotein-coding
Descriptionperiodic tryptophan protein 2 homologPWP2 periodic tryptophan protein homologPWP2, UTPB SSU processome subunitsplicing factor, suppressor of white-apricot homologsplicing factor SWAP homologsplicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot, Drosophila ho
Modification date2018052320180523
UniProtAcc

Q15269

Q12872

Ensembl transtripts involved in fusion geneENST00000291576, ENST00000494310, 
ENST00000261674, ENST00000541286, 
ENST00000539506, 
Fusion gene scores* DoF score3 X 3 X 3=278 X 8 X 8=512
# samples 310
** MAII scorelog2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(10/512*10)=-2.35614381022528
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PWP2 [Title/Abstract] AND SFSWAP [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-A8-A08J-01APWP2chr21

45537844

+SFSWAPchr12

132271008

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000291576ENST00000261674PWP2chr21

45537844

+SFSWAPchr12

132271008

+
In-frameENST00000291576ENST00000541286PWP2chr21

45537844

+SFSWAPchr12

132271008

+
5CDS-3UTRENST00000291576ENST00000539506PWP2chr21

45537844

+SFSWAPchr12

132271008

+
intron-3CDSENST00000494310ENST00000261674PWP2chr21

45537844

+SFSWAPchr12

132271008

+
intron-3CDSENST00000494310ENST00000541286PWP2chr21

45537844

+SFSWAPchr12

132271008

+
intron-3UTRENST00000494310ENST00000539506PWP2chr21

45537844

+SFSWAPchr12

132271008

+

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FusionProtFeatures for PWP2_SFSWAP


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PWP2

Q15269

SFSWAP

Q12872

Plays a role as an alternative splicing regulator.Regulate its own expression at the level of RNA processing. Alsoregulates the splicing of fibronectin and CD45 genes. May act, atleast in part, by interaction with other R/S-containing splicingfactors. Represses the splicing of MAPT/Tau exon 10.{ECO:0000269|PubMed:8940107}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821240_247326920Compositional biasNote=Poly-Glu
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+82112_50326920RepeatNote=WD 1
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821142_181326920RepeatNote=WD 4
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821186_225326920RepeatNote=WD 5
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821286_325326920RepeatNote=WD 6
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+82153_93326920RepeatNote=WD 2
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+82194_132326920RepeatNote=WD 3
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318850_853802952Compositional biasNote=Poly-Lys

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821328_368326920RepeatNote=WD 7
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821371_410326920RepeatNote=WD 8
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821413_452326920RepeatNote=WD 9
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821456_498326920RepeatNote=WD 10
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821499_538326920RepeatNote=WD 11
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821541_580326920RepeatNote=WD 12
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821603_642326920RepeatNote=WD 13
HgenePWP2chr21:45537844chr12:132271008ENST00000291576+821700_740326920RepeatNote=WD 14
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318165_168802952Compositional biasNote=Poly-Glu
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318287_290802952Compositional biasNote=Poly-Asp
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318382_385802952Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318413_416802952Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318420_424802952Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318434_440802952Compositional biasNote=Poly-Thr
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318451_454802952Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318616_619802952Compositional biasNote=Poly-Ser
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318660_663802952Compositional biasNote=Poly-Ala
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318754_763802952Compositional biasNote=Poly-Lys
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318789_951802952Compositional biasNote=Arg/Ser-rich (RS domain)
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419165_1688541004Compositional biasNote=Poly-Glu
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419287_2908541004Compositional biasNote=Poly-Asp
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419382_3858541004Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419413_4168541004Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419420_4248541004Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419434_4408541004Compositional biasNote=Poly-Thr
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419451_4548541004Compositional biasNote=Poly-Pro
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419616_6198541004Compositional biasNote=Poly-Ser
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419660_6638541004Compositional biasNote=Poly-Ala
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419754_7638541004Compositional biasNote=Poly-Lys
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419789_9518541004Compositional biasNote=Arg/Ser-rich (RS domain)
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419850_8538541004Compositional biasNote=Poly-Lys
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318211_253802952RepeatNote=SURP motif 1
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000261674+1318459_499802952RepeatNote=SURP motif 2
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419211_2538541004RepeatNote=SURP motif 1
TgeneSFSWAPchr21:45537844chr12:132271008ENST00000541286+1419459_4998541004RepeatNote=SURP motif 2


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FusionGeneSequence for PWP2_SFSWAP


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_PWP2_ENST00000291576_chr21_45537844_+_SFSWAP_ENST00000261674_chr12_132271008_+_476aa
MKFAYRFSNLLGTVYRRGNLNFTCDGNSVISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVL
HHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFVVGSKDMSTWVFGAERWDNLI
YYALGGHKDAIVACFFESNSLDLYSLSQDGVLCMWQCDTPPEGLRLKPPAGWKADLLQREEEEEEEEDQEGDRETTIRGKATPAEEEKTG
KVKYSRLAKYFFNKEGDFNNLTAAAFHKKSHLLVTGFASGIFHLHELPEFNLIHSLRSRSRSPRRRAHSPERRREERSVPTAYRVSRSPG
ASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPAAHSAHSASVSPVESRGSSQERSRGVSQEKEAQISSAIVSSVQS

>In-frame_PWP2_ENST00000291576_chr21_45537844_+_SFSWAP_ENST00000541286_chr12_132271008_+_476aa
MKFAYRFSNLLGTVYRRGNLNFTCDGNSVISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVL
HHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFVVGSKDMSTWVFGAERWDNLI
YYALGGHKDAIVACFFESNSLDLYSLSQDGVLCMWQCDTPPEGLRLKPPAGWKADLLQREEEEEEEEDQEGDRETTIRGKATPAEEEKTG
KVKYSRLAKYFFNKEGDFNNLTAAAFHKKSHLLVTGFASGIFHLHELPEFNLIHSLRSRSRSPRRRAHSPERRREERSVPTAYRVSRSPG
ASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPAAHSAHSASVSPVESRGSSQERSRGVSQEKEAQISSAIVSSVQS


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_PWP2_ENST00000291576_chr21_45537844_+_SFSWAP_ENST00000261674_chr12_132271008_+_1428nt
ATGAAGTTCGCTTACCGGTTTTCAAATTTGCTGGGTACGGTGTACCGGCGTGGGAACCTAAATTTTACCTGCGATGGAAATTCAGTTATC
AGTCCCGTGGGCAATAGAGTCACTGTATTTGACCTTAAAAACAACAAATCTGACACGCTGCCCCTGGCCACTCGGTACAACGTCAAGTGC
GTGGGGCTGTCCCCGGATGGCCGCCTCGCTATCATCGTCGATGAAGGGGGCGATGCGCTGCTGGTCAGCCTGGTCTGCAGGTCTGTGCTG
CACCACTTCCACTTCAAGGGCTCTGTGCACAGTGTGTCCTTCTCCCCTGATGGCAGGAAGTTTGTTGTCACAAAGGGTAACATTGCCCAG
ATGTATCATGCCCCTGGGAAGAAGCGGGAGTTCAACGCCTTCGTTCTGGACAAGACCTATTTTGGGCCCTACGATGAGACCACCTGCATC
GACTGGACGGATGACTCCAGGTGCTTTGTGGTTGGGAGCAAAGACATGTCCACCTGGGTGTTCGGAGCCGAGCGCTGGGACAACCTCATC
TACTATGCACTGGGGGGACATAAGGATGCCATCGTGGCCTGCTTCTTTGAATCCAACAGCCTGGACCTGTACTCACTCAGCCAGGACGGA
GTGCTGTGCATGTGGCAGTGTGACACGCCCCCCGAGGGCTTGCGGCTGAAGCCCCCTGCGGGCTGGAAAGCAGACCTGTTGCAGCGGGAG
GAGGAAGAGGAGGAGGAGGAGGACCAGGAGGGCGACAGAGAGACCACCATCCGGGGAAAAGCCACTCCGGCCGAGGAGGAGAAGACAGGA
AAAGTGAAGTACTCACGGCTGGCCAAGTACTTCTTCAATAAAGAAGGGGATTTTAACAACCTGACAGCTGCAGCATTTCATAAGAAGTCT
CACCTCTTGGTCACTGGCTTTGCTTCTGGAATCTTCCATCTTCATGAGCTGCCAGAGTTTAACCTCATCCACTCCCTGAGGTCCCGCTCC
CGGTCCCCTCGGAGGAGAGCCCACTCCCCTGAGAGACGGAGGGAAGAGAGGAGTGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGG
GCCAGTAGGAAGCGGACCCGCTCCAGAAGTCCCCACGAGAAGAAGAAGAAGAGGCGGTCCCGGTCGCGGACCAAGTCCAAGGCCAGGTCT
CAGTCGGTGTCACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGCCCACTCGGCGCACTCAGCCAGCGTCTCCCCTGTGGAG
AGTCGGGGCTCCAGCCAGGAGCGCTCCAGGGGAGTCTCTCAGGAAAAAGAAGCCCAGATCTCTTCAGCAATCGTTTCTTCCGTGCAGAGC

>In-frame_PWP2_ENST00000291576_chr21_45537844_+_SFSWAP_ENST00000541286_chr12_132271008_+_1428nt
ATGAAGTTCGCTTACCGGTTTTCAAATTTGCTGGGTACGGTGTACCGGCGTGGGAACCTAAATTTTACCTGCGATGGAAATTCAGTTATC
AGTCCCGTGGGCAATAGAGTCACTGTATTTGACCTTAAAAACAACAAATCTGACACGCTGCCCCTGGCCACTCGGTACAACGTCAAGTGC
GTGGGGCTGTCCCCGGATGGCCGCCTCGCTATCATCGTCGATGAAGGGGGCGATGCGCTGCTGGTCAGCCTGGTCTGCAGGTCTGTGCTG
CACCACTTCCACTTCAAGGGCTCTGTGCACAGTGTGTCCTTCTCCCCTGATGGCAGGAAGTTTGTTGTCACAAAGGGTAACATTGCCCAG
ATGTATCATGCCCCTGGGAAGAAGCGGGAGTTCAACGCCTTCGTTCTGGACAAGACCTATTTTGGGCCCTACGATGAGACCACCTGCATC
GACTGGACGGATGACTCCAGGTGCTTTGTGGTTGGGAGCAAAGACATGTCCACCTGGGTGTTCGGAGCCGAGCGCTGGGACAACCTCATC
TACTATGCACTGGGGGGACATAAGGATGCCATCGTGGCCTGCTTCTTTGAATCCAACAGCCTGGACCTGTACTCACTCAGCCAGGACGGA
GTGCTGTGCATGTGGCAGTGTGACACGCCCCCCGAGGGCTTGCGGCTGAAGCCCCCTGCGGGCTGGAAAGCAGACCTGTTGCAGCGGGAG
GAGGAAGAGGAGGAGGAGGAGGACCAGGAGGGCGACAGAGAGACCACCATCCGGGGAAAAGCCACTCCGGCCGAGGAGGAGAAGACAGGA
AAAGTGAAGTACTCACGGCTGGCCAAGTACTTCTTCAATAAAGAAGGGGATTTTAACAACCTGACAGCTGCAGCATTTCATAAGAAGTCT
CACCTCTTGGTCACTGGCTTTGCTTCTGGAATCTTCCATCTTCATGAGCTGCCAGAGTTTAACCTCATCCACTCCCTGAGGTCCCGCTCC
CGGTCCCCTCGGAGGAGAGCCCACTCCCCTGAGAGACGGAGGGAAGAGAGGAGTGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGG
GCCAGTAGGAAGCGGACCCGCTCCAGAAGTCCCCACGAGAAGAAGAAGAAGAGGCGGTCCCGGTCGCGGACCAAGTCCAAGGCCAGGTCT
CAGTCGGTGTCACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGCCCACTCGGCGCACTCAGCCAGCGTCTCCCCTGTGGAG
AGTCGGGGCTCCAGCCAGGAGCGCTCCAGGGGAGTCTCTCAGGAAAAAGAAGCCCAGATCTCTTCAGCAATCGTTTCTTCCGTGCAGAGC


* Fusion transcript sequences (Full-length transcript).
>In-frame_PWP2_ENST00000291576_chr21_45537844_+_SFSWAP_ENST00000261674_chr12_132271008_+_1804nt
GCGCTGTGGGCGGTGCACGCCGTCGCTTCCCGGAAGTGCGTGCTGTGGGCGGTGCCGCGCGGACCCCCGGGAAGTGTCTCTGTGGGCGGC
CGCCGGGTTGAGCTGCGGCACACGTGCGACGGCCGTGATGAAGTTCGCTTACCGGTTTTCAAATTTGCTGGGTACGGTGTACCGGCGTGG
GAACCTAAATTTTACCTGCGATGGAAATTCAGTTATCAGTCCCGTGGGCAATAGAGTCACTGTATTTGACCTTAAAAACAACAAATCTGA
CACGCTGCCCCTGGCCACTCGGTACAACGTCAAGTGCGTGGGGCTGTCCCCGGATGGCCGCCTCGCTATCATCGTCGATGAAGGGGGCGA
TGCGCTGCTGGTCAGCCTGGTCTGCAGGTCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAGTGTGTCCTTCTCCCCTGATGG
CAGGAAGTTTGTTGTCACAAAGGGTAACATTGCCCAGATGTATCATGCCCCTGGGAAGAAGCGGGAGTTCAACGCCTTCGTTCTGGACAA
GACCTATTTTGGGCCCTACGATGAGACCACCTGCATCGACTGGACGGATGACTCCAGGTGCTTTGTGGTTGGGAGCAAAGACATGTCCAC
CTGGGTGTTCGGAGCCGAGCGCTGGGACAACCTCATCTACTATGCACTGGGGGGACATAAGGATGCCATCGTGGCCTGCTTCTTTGAATC
CAACAGCCTGGACCTGTACTCACTCAGCCAGGACGGAGTGCTGTGCATGTGGCAGTGTGACACGCCCCCCGAGGGCTTGCGGCTGAAGCC
CCCTGCGGGCTGGAAAGCAGACCTGTTGCAGCGGGAGGAGGAAGAGGAGGAGGAGGAGGACCAGGAGGGCGACAGAGAGACCACCATCCG
GGGAAAAGCCACTCCGGCCGAGGAGGAGAAGACAGGAAAAGTGAAGTACTCACGGCTGGCCAAGTACTTCTTCAATAAAGAAGGGGATTT
TAACAACCTGACAGCTGCAGCATTTCATAAGAAGTCTCACCTCTTGGTCACTGGCTTTGCTTCTGGAATCTTCCATCTTCATGAGCTGCC
AGAGTTTAACCTCATCCACTCCCTGAGGTCCCGCTCCCGGTCCCCTCGGAGGAGAGCCCACTCCCCTGAGAGACGGAGGGAAGAGAGGAG
TGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGGGCCAGTAGGAAGCGGACCCGCTCCAGAAGTCCCCACGAGAAGAAGAAGAAGAG
GCGGTCCCGGTCGCGGACCAAGTCCAAGGCCAGGTCTCAGTCGGTGTCACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGC
CCACTCGGCGCACTCAGCCAGCGTCTCCCCTGTGGAGAGTCGGGGCTCCAGCCAGGAGCGCTCCAGGGGAGTCTCTCAGGAAAAAGAAGC
CCAGATCTCTTCAGCAATCGTTTCTTCCGTGCAGAGCAAAATCACTCAGGATCTCATGGCCAAAGTCAGAGCGATGCTTGCAGCTTCCAA
AAACCTGCAAACCAGCGCTTCCTGAGACGGGGCCAGCGGAGGCAGAGCCGGGAGGCTGCGTGGGCTTCTGGGCAGGCTCACGCAGACGCC
GGCCACACCATCCACCTGGCCGCCTCCATGGACCCTTGGTGGCTTTTGTAAATTAATTTTTGATGACATTTTGAGTTTTAAGATTTCTGA
CCAGCAGTCTCTTACCTGTATATTTGTAAATATATCATGTTTCTGTGAAAATGTATTATGAAATAAAATGGGAGGAAACACCTTTTCTAG

>In-frame_PWP2_ENST00000291576_chr21_45537844_+_SFSWAP_ENST00000541286_chr12_132271008_+_1669nt
GCGCTGTGGGCGGTGCACGCCGTCGCTTCCCGGAAGTGCGTGCTGTGGGCGGTGCCGCGCGGACCCCCGGGAAGTGTCTCTGTGGGCGGC
CGCCGGGTTGAGCTGCGGCACACGTGCGACGGCCGTGATGAAGTTCGCTTACCGGTTTTCAAATTTGCTGGGTACGGTGTACCGGCGTGG
GAACCTAAATTTTACCTGCGATGGAAATTCAGTTATCAGTCCCGTGGGCAATAGAGTCACTGTATTTGACCTTAAAAACAACAAATCTGA
CACGCTGCCCCTGGCCACTCGGTACAACGTCAAGTGCGTGGGGCTGTCCCCGGATGGCCGCCTCGCTATCATCGTCGATGAAGGGGGCGA
TGCGCTGCTGGTCAGCCTGGTCTGCAGGTCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAGTGTGTCCTTCTCCCCTGATGG
CAGGAAGTTTGTTGTCACAAAGGGTAACATTGCCCAGATGTATCATGCCCCTGGGAAGAAGCGGGAGTTCAACGCCTTCGTTCTGGACAA
GACCTATTTTGGGCCCTACGATGAGACCACCTGCATCGACTGGACGGATGACTCCAGGTGCTTTGTGGTTGGGAGCAAAGACATGTCCAC
CTGGGTGTTCGGAGCCGAGCGCTGGGACAACCTCATCTACTATGCACTGGGGGGACATAAGGATGCCATCGTGGCCTGCTTCTTTGAATC
CAACAGCCTGGACCTGTACTCACTCAGCCAGGACGGAGTGCTGTGCATGTGGCAGTGTGACACGCCCCCCGAGGGCTTGCGGCTGAAGCC
CCCTGCGGGCTGGAAAGCAGACCTGTTGCAGCGGGAGGAGGAAGAGGAGGAGGAGGAGGACCAGGAGGGCGACAGAGAGACCACCATCCG
GGGAAAAGCCACTCCGGCCGAGGAGGAGAAGACAGGAAAAGTGAAGTACTCACGGCTGGCCAAGTACTTCTTCAATAAAGAAGGGGATTT
TAACAACCTGACAGCTGCAGCATTTCATAAGAAGTCTCACCTCTTGGTCACTGGCTTTGCTTCTGGAATCTTCCATCTTCATGAGCTGCC
AGAGTTTAACCTCATCCACTCCCTGAGGTCCCGCTCCCGGTCCCCTCGGAGGAGAGCCCACTCCCCTGAGAGACGGAGGGAAGAGAGGAG
TGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGGGCCAGTAGGAAGCGGACCCGCTCCAGAAGTCCCCACGAGAAGAAGAAGAAGAG
GCGGTCCCGGTCGCGGACCAAGTCCAAGGCCAGGTCTCAGTCGGTGTCACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGC
CCACTCGGCGCACTCAGCCAGCGTCTCCCCTGTGGAGAGTCGGGGCTCCAGCCAGGAGCGCTCCAGGGGAGTCTCTCAGGAAAAAGAAGC
CCAGATCTCTTCAGCAATCGTTTCTTCCGTGCAGAGCAAAATCACTCAGGATCTCATGGCCAAAGTCAGAGCGATGCTTGCAGCTTCCAA
AAACCTGCAAACCAGCGCTTCCTGAGACGGGGCCAGCGGAGGCAGAGCCGGGAGGCTGCGTGGGCTTCTGGGCAGGCTCACGCAGACGCC


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FusionGenePPI for PWP2_SFSWAP


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PWP2TOM1L1, USP36, HDGF, SIRT7, CUL3, CUL1, WDR36, RRP9, IPO13, MMS19, TARDBP, HECW2, CUL7, OBSL1, EED, RNF2, FBL, MPHOSPH10, BYSL, DDX18, IMP3, WDR3, TBL3, IFI16, B9D2, CNTRL, CEP19, XPO1, BAG6, ZNF746, TMEM206, GYPB, FGF8, FGF3, MECP2, ZNF71, DNAJC7, RBM4, BBS7, GPATCH4, ZNF692SFSWAPRNPS1, JMJD6, CAND1, EAF1, NTRK1, EWSR1, NEIL3, CFAP20, RBM17, CAPN13, TSEN2, DLST


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PWP2_SFSWAP


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PWP2_SFSWAP


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneSFSWAPC1510586Autism Spectrum Disorders1CTD_human