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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 29510

FusionGeneSummary for PTPRF_PHF20

check button Fusion gene summary
Fusion gene informationFusion gene name: PTPRF_PHF20
Fusion gene ID: 29510
HgeneTgene
Gene symbol

PTPRF

PHF20

Gene ID

5792

51230

Gene nameprotein tyrosine phosphatase, receptor type FPHD finger protein 20
SynonymsBNAH2|LARC20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP
Cytomap

1p34.2

20q11.22-q11.23

Type of geneprotein-codingprotein-coding
Descriptionreceptor-type tyrosine-protein phosphatase FLCA-homologleukocyte antigen-related (LAR) PTP receptorleukocyte antigen-related tyrosine phosphataseleukocyte common antigen relatedprotein tyrosine phosphatase, receptor type, F polypeptidereceptor-linkePHD finger protein 20glioma-expressed antigen 2hepatocellular carcinoma-associated antigen 58novel zinc finger proteintranscription factor TZPtudor domain containing 20A
Modification date2018052220180523
UniProtAcc

P10586

Q9BVI0

Ensembl transtripts involved in fusion geneENST00000359947, ENST00000438120, 
ENST00000372413, ENST00000372414, 
ENST00000422171, ENST00000496447, 
ENST00000374012, ENST00000439301, 
ENST00000481202, 
Fusion gene scores* DoF score10 X 9 X 7=63010 X 9 X 9=810
# samples 1114
** MAII scorelog2(11/630*10)=-2.51784830486262
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(14/810*10)=-2.53249508082702
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PTPRF [Title/Abstract] AND PHF20 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePHF20

GO:0043981

histone H4-K5 acetylation

20018852

TgenePHF20

GO:0043982

histone H4-K8 acetylation

20018852

TgenePHF20

GO:0043984

histone H4-K16 acetylation

20018852


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDOVTCGA-61-2111-01APTPRFchr1

44044591

+PHF20chr20

34487292

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000359947ENST00000374012PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000359947ENST00000439301PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000359947ENST00000481202PTPRFchr1

44044591

+PHF20chr20

34487292

+
In-frameENST00000438120ENST00000374012PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000438120ENST00000439301PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000438120ENST00000481202PTPRFchr1

44044591

+PHF20chr20

34487292

+
In-frameENST00000372413ENST00000374012PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000372413ENST00000439301PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000372413ENST00000481202PTPRFchr1

44044591

+PHF20chr20

34487292

+
In-frameENST00000372414ENST00000374012PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000372414ENST00000439301PTPRFchr1

44044591

+PHF20chr20

34487292

+
5CDS-3UTRENST00000372414ENST00000481202PTPRFchr1

44044591

+PHF20chr20

34487292

+
intron-3CDSENST00000422171ENST00000374012PTPRFchr1

44044591

+PHF20chr20

34487292

+
intron-3UTRENST00000422171ENST00000439301PTPRFchr1

44044591

+PHF20chr20

34487292

+
intron-3UTRENST00000422171ENST00000481202PTPRFchr1

44044591

+PHF20chr20

34487292

+
intron-3CDSENST00000496447ENST00000374012PTPRFchr1

44044591

+PHF20chr20

34487292

+
intron-3UTRENST00000496447ENST00000439301PTPRFchr1

44044591

+PHF20chr20

34487292

+
intron-3UTRENST00000496447ENST00000481202PTPRFchr1

44044591

+PHF20chr20

34487292

+

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FusionProtFeatures for PTPRF_PHF20


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PTPRF

P10586

PHF20

Q9BVI0

Possible cell adhesion receptor. It possesses anintrinsic protein tyrosine phosphatase activity (PTPase) anddephosphorylates EPHA2 regulating its activity. The first PTPase domain has enzymatic activity, whilethe second one seems to affect the substrate specificity of thefirst one.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734135_2242261908DomainNote=Ig-like C2-type 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+73433_1232261908DomainNote=Ig-like C2-type 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531135_2242261899DomainNote=Ig-like C2-type 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+53133_1232261899DomainNote=Ig-like C2-type 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532135_2242261908DomainNote=Ig-like C2-type 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+53233_1232261908DomainNote=Ig-like C2-type 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733135_2242261899DomainNote=Ig-like C2-type 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+73333_1232261899DomainNote=Ig-like C2-type 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+73468_772261908RegionHeparin-binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+53168_772261899RegionHeparin-binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+53268_772261908RegionHeparin-binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+73368_772261899RegionHeparin-binding
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+818523_5524271013Compositional biasNote=Lys-rich
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+919523_5524051356Compositional biasNote=Lys-rich
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+818452_4774271013Zinc fingerC2H2-type
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+818654_7004271013Zinc fingerNote=PHD-type
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+919452_4774051356Zinc fingerC2H2-type
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+919654_7004051356Zinc fingerNote=PHD-type

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+7341014_10982261908DomainFibronectin type-III 8
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+7341352_16072261908DomainTyrosine-protein phosphatase 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+7341639_18982261908DomainTyrosine-protein phosphatase 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734232_3142261908DomainNote=Ig-like C2-type 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734321_4112261908DomainFibronectin type-III 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734416_5102261908DomainFibronectin type-III 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734514_6042261908DomainFibronectin type-III 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734609_7062261908DomainFibronectin type-III 4
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734711_8192261908DomainFibronectin type-III 5
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734820_9142261908DomainFibronectin type-III 6
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+734918_10102261908DomainFibronectin type-III 7
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+5311014_10982261899DomainFibronectin type-III 8
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+5311352_16072261899DomainTyrosine-protein phosphatase 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+5311639_18982261899DomainTyrosine-protein phosphatase 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531232_3142261899DomainNote=Ig-like C2-type 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531321_4112261899DomainFibronectin type-III 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531416_5102261899DomainFibronectin type-III 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531514_6042261899DomainFibronectin type-III 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531609_7062261899DomainFibronectin type-III 4
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531711_8192261899DomainFibronectin type-III 5
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531820_9142261899DomainFibronectin type-III 6
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+531918_10102261899DomainFibronectin type-III 7
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+5321014_10982261908DomainFibronectin type-III 8
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+5321352_16072261908DomainTyrosine-protein phosphatase 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+5321639_18982261908DomainTyrosine-protein phosphatase 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532232_3142261908DomainNote=Ig-like C2-type 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532321_4112261908DomainFibronectin type-III 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532416_5102261908DomainFibronectin type-III 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532514_6042261908DomainFibronectin type-III 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532609_7062261908DomainFibronectin type-III 4
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532711_8192261908DomainFibronectin type-III 5
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532820_9142261908DomainFibronectin type-III 6
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+532918_10102261908DomainFibronectin type-III 7
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+7331014_10982261899DomainFibronectin type-III 8
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+7331352_16072261899DomainTyrosine-protein phosphatase 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+7331639_18982261899DomainTyrosine-protein phosphatase 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733232_3142261899DomainNote=Ig-like C2-type 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733321_4112261899DomainFibronectin type-III 1
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733416_5102261899DomainFibronectin type-III 2
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733514_6042261899DomainFibronectin type-III 3
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733609_7062261899DomainFibronectin type-III 4
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733711_8192261899DomainFibronectin type-III 5
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733820_9142261899DomainFibronectin type-III 6
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+733918_10102261899DomainFibronectin type-III 7
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+7341548_15542261908RegionSubstrate binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+5311548_15542261899RegionSubstrate binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+5321548_15542261908RegionSubstrate binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+7331548_15542261899RegionSubstrate binding
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+7341285_19072261908Topological domainCytoplasmic
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+73430_12632261908Topological domainExtracellular
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+5311285_19072261899Topological domainCytoplasmic
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+53130_12632261899Topological domainExtracellular
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+5321285_19072261908Topological domainCytoplasmic
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+53230_12632261908Topological domainExtracellular
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+7331285_19072261899Topological domainCytoplasmic
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+73330_12632261899Topological domainExtracellular
HgenePTPRFchr1:44044591chr20:34487292ENST00000359947+7341264_12842261908TransmembraneHelical
HgenePTPRFchr1:44044591chr20:34487292ENST00000372413+5311264_12842261899TransmembraneHelical
HgenePTPRFchr1:44044591chr20:34487292ENST00000372414+5321264_12842261908TransmembraneHelical
HgenePTPRFchr1:44044591chr20:34487292ENST00000438120+7331264_12842261899TransmembraneHelical
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+818162_2214271013Compositional biasNote=Lys-rich
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+919162_2214051356Compositional biasNote=Lys-rich
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+818257_2694271013DNA bindingNote=A.T hook
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+919257_2694051356DNA bindingNote=A.T hook
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+8184_694271013DomainNote=Tudor 1
TgenePHF20chr1:44044591chr20:34487292ENST00000374012+81883_1474271013DomainNote=Tudor 2
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+9194_694051356DomainNote=Tudor 1
TgenePHF20chr1:44044591chr20:34487292ENST00000439301+91983_1474051356DomainNote=Tudor 2


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FusionGeneSequence for PTPRF_PHF20


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_PTPRF_ENST00000359947_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_812aa
MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV
LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS
NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVTNTFKKTDDFGSSNAPAVDLDHKFRCKVVDCLKFFRKAKLLHY
HMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEI
SDTSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLWSDDEYGQDVDVTTNPDEELDGDDRYDFE
VVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEENYSHQNAKKIVA
THQLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLWCQPWKQHSGEGRSHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRSVE
ESYITSEHCYQKPRAYYPAVEQKLVVETRGSALDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYVSKKALPEEAPAR
KLLDRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQIALCCS

>In-frame_PTPRF_ENST00000438120_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_812aa
MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV
LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS
NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVTNTFKKTDDFGSSNAPAVDLDHKFRCKVVDCLKFFRKAKLLHY
HMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEI
SDTSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLWSDDEYGQDVDVTTNPDEELDGDDRYDFE
VVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEENYSHQNAKKIVA
THQLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLWCQPWKQHSGEGRSHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRSVE
ESYITSEHCYQKPRAYYPAVEQKLVVETRGSALDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYVSKKALPEEAPAR
KLLDRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQIALCCS

>In-frame_PTPRF_ENST00000372413_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_812aa
MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV
LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS
NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVTNTFKKTDDFGSSNAPAVDLDHKFRCKVVDCLKFFRKAKLLHY
HMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEI
SDTSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLWSDDEYGQDVDVTTNPDEELDGDDRYDFE
VVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEENYSHQNAKKIVA
THQLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLWCQPWKQHSGEGRSHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRSVE
ESYITSEHCYQKPRAYYPAVEQKLVVETRGSALDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYVSKKALPEEAPAR
KLLDRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQIALCCS

>In-frame_PTPRF_ENST00000372414_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_812aa
MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV
LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS
NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVTNTFKKTDDFGSSNAPAVDLDHKFRCKVVDCLKFFRKAKLLHY
HMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEI
SDTSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLWSDDEYGQDVDVTTNPDEELDGDDRYDFE
VVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEENYSHQNAKKIVA
THQLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLWCQPWKQHSGEGRSHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRSVE
ESYITSEHCYQKPRAYYPAVEQKLVVETRGSALDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYVSKKALPEEAPAR
KLLDRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQIALCCS


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_PTPRF_ENST00000359947_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_2436nt
ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC
AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC
AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG
CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC
AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC
ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC
AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC
AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCT
AATGCACCAGCTGTCGACCTAGACCATAAGTTTAGATGCAAAGTTGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTAT
CACATGAAGTATTTCCATGGAATGGAGAAGTCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCT
TCAGACAAGCCCAGCCAGGAGACCCTGACCAGGAAGCGGGTCTCTGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAG
AAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAAAAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATC
AGTGACACCTCCCAGGAACCTTCTCCACCCAAGGCATTTGCTGTTACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCG
CAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAGTGAAAGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTT
CTCTGGAGTGATGATGAGTATGGCCAAGATGTGGATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAG
GTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCATGATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATG
GGATTACTGGAAGAAAATGTGCCCGAGAAATACACCTGTTATGTTTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTAT
GACAAGGAGTGGCTGAGCAGGGGACATATGCATGGCCTGGCATTTCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCC
ACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGATTGAGGTTCTGCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCAT
CCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGG
AGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGAACGGGGCAGTGGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAG
GAATCCTATATCACCAGTGAGCATTGCTACCAGAAGCCCCGCGCCTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGC
TCTGCCCTCGACGATGCGGTCAACCCCCTCCATGAGAACGGCGATGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGG
AGCAAGGGGGACAGTGACCCCAAACCCGGCTCCCCAAAGGTGAAGGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGG
AAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGAGCTCCCAGCACCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGAT
GAAGTTACGCACAGGATGGACTCCATTGAGAAGGAGTTGGATGTGTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAG
CCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTATCAAGCAGCTGCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCA

>In-frame_PTPRF_ENST00000438120_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_2436nt
ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC
AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC
AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG
CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC
AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC
ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC
AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC
AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCT
AATGCACCAGCTGTCGACCTAGACCATAAGTTTAGATGCAAAGTTGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTAT
CACATGAAGTATTTCCATGGAATGGAGAAGTCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCT
TCAGACAAGCCCAGCCAGGAGACCCTGACCAGGAAGCGGGTCTCTGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAG
AAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAAAAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATC
AGTGACACCTCCCAGGAACCTTCTCCACCCAAGGCATTTGCTGTTACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCG
CAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAGTGAAAGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTT
CTCTGGAGTGATGATGAGTATGGCCAAGATGTGGATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAG
GTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCATGATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATG
GGATTACTGGAAGAAAATGTGCCCGAGAAATACACCTGTTATGTTTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTAT
GACAAGGAGTGGCTGAGCAGGGGACATATGCATGGCCTGGCATTTCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCC
ACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGATTGAGGTTCTGCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCAT
CCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGG
AGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGAACGGGGCAGTGGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAG
GAATCCTATATCACCAGTGAGCATTGCTACCAGAAGCCCCGCGCCTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGC
TCTGCCCTCGACGATGCGGTCAACCCCCTCCATGAGAACGGCGATGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGG
AGCAAGGGGGACAGTGACCCCAAACCCGGCTCCCCAAAGGTGAAGGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGG
AAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGAGCTCCCAGCACCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGAT
GAAGTTACGCACAGGATGGACTCCATTGAGAAGGAGTTGGATGTGTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAG
CCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTATCAAGCAGCTGCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCA

>In-frame_PTPRF_ENST00000372413_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_2436nt
ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC
AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC
AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG
CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC
AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC
ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC
AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC
AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCT
AATGCACCAGCTGTCGACCTAGACCATAAGTTTAGATGCAAAGTTGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTAT
CACATGAAGTATTTCCATGGAATGGAGAAGTCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCT
TCAGACAAGCCCAGCCAGGAGACCCTGACCAGGAAGCGGGTCTCTGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAG
AAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAAAAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATC
AGTGACACCTCCCAGGAACCTTCTCCACCCAAGGCATTTGCTGTTACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCG
CAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAGTGAAAGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTT
CTCTGGAGTGATGATGAGTATGGCCAAGATGTGGATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAG
GTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCATGATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATG
GGATTACTGGAAGAAAATGTGCCCGAGAAATACACCTGTTATGTTTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTAT
GACAAGGAGTGGCTGAGCAGGGGACATATGCATGGCCTGGCATTTCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCC
ACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGATTGAGGTTCTGCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCAT
CCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGG
AGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGAACGGGGCAGTGGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAG
GAATCCTATATCACCAGTGAGCATTGCTACCAGAAGCCCCGCGCCTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGC
TCTGCCCTCGACGATGCGGTCAACCCCCTCCATGAGAACGGCGATGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGG
AGCAAGGGGGACAGTGACCCCAAACCCGGCTCCCCAAAGGTGAAGGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGG
AAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGAGCTCCCAGCACCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGAT
GAAGTTACGCACAGGATGGACTCCATTGAGAAGGAGTTGGATGTGTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAG
CCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTATCAAGCAGCTGCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCA

>In-frame_PTPRF_ENST00000372414_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_2436nt
ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC
AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC
AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG
CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC
AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC
ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC
AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC
AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCT
AATGCACCAGCTGTCGACCTAGACCATAAGTTTAGATGCAAAGTTGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTAT
CACATGAAGTATTTCCATGGAATGGAGAAGTCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCT
TCAGACAAGCCCAGCCAGGAGACCCTGACCAGGAAGCGGGTCTCTGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAG
AAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAAAAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATC
AGTGACACCTCCCAGGAACCTTCTCCACCCAAGGCATTTGCTGTTACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCG
CAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAGTGAAAGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTT
CTCTGGAGTGATGATGAGTATGGCCAAGATGTGGATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAG
GTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCATGATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATG
GGATTACTGGAAGAAAATGTGCCCGAGAAATACACCTGTTATGTTTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTAT
GACAAGGAGTGGCTGAGCAGGGGACATATGCATGGCCTGGCATTTCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCC
ACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGATTGAGGTTCTGCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCAT
CCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGG
AGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGAACGGGGCAGTGGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAG
GAATCCTATATCACCAGTGAGCATTGCTACCAGAAGCCCCGCGCCTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGC
TCTGCCCTCGACGATGCGGTCAACCCCCTCCATGAGAACGGCGATGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGG
AGCAAGGGGGACAGTGACCCCAAACCCGGCTCCCCAAAGGTGAAGGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGG
AAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGAGCTCCCAGCACCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGAT
GAAGTTACGCACAGGATGGACTCCATTGAGAAGGAGTTGGATGTGTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAG
CCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTATCAAGCAGCTGCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCA


* Fusion transcript sequences (Full-length transcript).
>In-frame_PTPRF_ENST00000359947_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_5530nt
CGGGAGCGGCGGGAGCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTC
CGGCTCCAGCTCGGGTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCG
GGGGGACATGCGGACCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTG
ACCGGGGTGAAGAAGCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCC
AGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAA
AGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGAT
GAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCG
GGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGA
GGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGC
CGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCT
GCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTA
CTCAGCCCCTGCGAACCTGTATGTGCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCTAATGCACCAGCTGTCGACCT
AGACCATAAGTTTAGATGCAAAGTTGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTATCACATGAAGTATTTCCATGG
AATGGAGAAGTCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCTTCAGACAAGCCCAGCCAGGA
GACCCTGACCAGGAAGCGGGTCTCTGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAGAAATTCAAGGAGTTTGTGAG
AGTGAAGCCAAAGAAGAAAAAGAAAAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATCAGTGACACCTCCCAGGAACC
TTCTCCACCCAAGGCATTTGCTGTTACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCGCAGCTTCATGGCCCAGAATC
TGGACACCACAAAGGGAAAGTGAAAGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTTCTCTGGAGTGATGATGAGTA
TGGCCAAGATGTGGATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAGGTGGTCCGCTGCATCTGTGA
GGTCCAGGAGGAAAATGACTTCATGATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATGGGATTACTGGAAGAAAATGT
GCCCGAGAAATACACCTGTTATGTTTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTATGACAAGGAGTGGCTGAGCAG
GGGACATATGCATGGCCTGGCATTTCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCCACCCACCAGCTTCTTGGTGA
TGTGCAGAGAGTGATTGAGGTTCTGCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCATCCTGATCTGCCGCTGTGGTG
CCAGCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGGAGCAAGGAGGAAGCTCCAAG
CTATAGAACTTTGAACGGGGCAGTGGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAGGAATCCTATATCACCAGTGA
GCATTGCTACCAGAAGCCCCGCGCCTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGCTCTGCCCTCGACGATGCGGT
CAACCCCCTCCATGAGAACGGCGATGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGGAGCAAGGGGGACAGTGACCC
CAAACCCGGCTCCCCAAAGGTGAAGGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGGAAGCTGCTGGACAGAGGTGG
AGAGGGGCTGCTGAGCTCCCAGCACCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGATGAAGTTACGCACAGGATGGA
CTCCATTGAGAAGGAGTTGGATGTGTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAGCCGCTGGCCAGGCTTCCGCA
GCTCAAGCATTGTATCAAGCAGCTGCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCAACATGAAACTGGGCACCCAA
AACTCATGGGGGCACAATCCTGGGGCACCTGCAGGAGGAGCTTCGCATATTTAAATAAATAAACCTAGCATGCTGAATGCACGTGACACC
GACTGACTTCAGGGATCTGGGCCAGGAGTGTGGTGGACATTGGACAAAGAGGCCATTTTGGCTGCGGGAGGACACTCTGATCTCGAAGCC
TGCCATAAAGGTAGCAAATAGACTCTTGGGATTCCCCTCTTCTGTGCACATCGTTGAATGAAGAGAGTCTTTTTGCACAAACTTCACTTG
AAATTGTGCCACTGATGATAAACGGAATGAGAGCCAAAAAAGTTTAGTTGGAGACAGTTGTAAATTCAATTTGGAGTTTATTTAATTGAC
TTTTCTATCACGTTGGGGCACATGCCAACTCCCTGGTTTCTTCCTGGCATGGTGTTTGGGCAGCAGGCATCATTTTCCTTTTCTAGCTTC
ATAGGAATATTGTGAGCTCACCATGCTGTGGAGGTTGGGAAAGAGCAGAGTCTTGGCTGCCCTGCTTTCTCCTTAGGACTCTTCACTTTT
CTCACCACATCTCTTGCATGACTTCATGGTACTGGGGACAAGTTTGTATGCCTTCACCCCAGAGCTGGCTGGGTTATGGCTTTTGTAGCA
GAGCCCATACAGCCTATGGAAGAACTAGAATCTCACTCACAGTAATAAGAATCTAGGAGGAATTCCAAACCGAAGCAGGCAGGGTCTGGA
ACCCAAAGGACAGCATTTTCTACCCACTTCTTAATATTGACAGCTTCCCCGTTCTATTTAATGTCCAAAAATGTTTCCCAAAATTTCAAA
CTCTTTCACTGTAAAGATTTGTTACAAAGAATGTGGTTTGGGGAATTACCTTATTTTATATTGTTGTAAACAAACTTCAAATTCTACATG
TGCGACTTTTCTCCTTCCTGAAGGGTGTTTAGTAGTCAGCGTTTTCAGAATTGTTTTGTTACTATACTTTAACATTTTACATTTCCTGTT
TGTATTATTTTGTGAGAGCAAGGTGATCATGCTGCTTAAGGTCCAGGTACAACCTATTTGTACCTTTTGAGACAATATTTGTGTTACTTT
TGCAGGTTACGGTTCCACATGTAATTGCTATATTTTGTTTTGTTTTTCCTTACTAGGCAAAGTTAAAATGTTCCATGCTTTGAGGAGTGA
CCCATTTCACTACTTTGTTTTCTTATCACTAAAGGCAAAAATCAAAGCACAGTTGTCCATTAACACTTATAAGTTAATTATGGGTTTATG
AGTCTGTAATGTTATATGCTGCAAACATTTACTATGTAAACGTGAAGTAGCCAATAATATCTCAATAGTAGTAACAGTATCTTTAGCGAC
CTTTGGAATAGTTAAGCACAGGTCATTGTGGACATGAATTCAGGCCTCTGTACTAAAATCTATTTCAGGGAATGTTCTGTCTAGTGATTT
GCTCACCATTTGATATATAATGAATTATAGGACAAGTATAAGCTGATCTGCTATAGCTGTCCATCAGAGAGAATACACGTGGCTATAACA
TCTATAACAAAACGACGATTCCTCTACAAGAGGCTGTTTCTCACTGCTAACGTTGGTGTTTCTGGCGTGGGAAGAAATGCACAGGCGTGC
ATGGCATGCACGTTCAGACAGCTGCATTGTAAGAGTTCTGTCATGCAGTCTGAAAAGGGAAGAAACAGGATGGCTTTCTGTAGCCACACC
TGTGAGGCGTGATGATTGTTGTATTATTAGATTACTGATTTTTCTTTTCTGAAAATACATTTGAGTTTTAATCACATCTGTGGAAGCTGT
AACTTTTAAGGTAGTCAATTTCATGTCTTGTTCAACGATGTAAGCAGAAACTGAATTGCCCTAATTTTGCCAACTGGCCATTATTGGGAT
TATTGTTTAAATTTTTGGTAAAGGAAGTAATCTCCTTTCATTCATTGTGACTTTTGTTCTTAGGGAAGCAGAGAAGACTCCCCAAGTTCT
TATAACCTCATTGTGCTTCCCTAATTTAAAGCCATGTTGAGGGGCTCCATTCCCAATTCCTGGGTCAAGGTGAATTAACCCTATGTTGGA
GCACTGGAAACCGTTATTTGCAAACATTGCTGTTACCATTTAGAAATATGTGCACTATCAGCTGGGTGCAGTGGCTCACGTCTGTAATCC
CAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAGGGTGAAACCCCGTCTCTACTA
AAAGTACAAAAATTAGCTGGGCGTGGTGGCGGACGCCTGTAATCTCAGCTACTTGGGAGGCTGAAGCAGGAGAGGTGCTGGAACCTGGGA
GGCGGAGGTTGAAGTGAGCCGAGATTGCGCTATTGCACTCCAGCTCGGGCGACAACTGCAAGACTCCATCTCAAAAAAATAAAAATAAAA
GAAAAGAAAGAAATATGTGCACTACCTAAGTTTTGTCTTTAGAAAAACTATCCACCTATAAAAAATTACCTTGACAAAAATAGTTCCGGT
TTGACTAATCATTTTGTTTCTTTAAGTGGTAAGTGTATGCAAGGTGGATCCTTGATGAGCCAACATTGCACTGTGGATACATATCTATGT
TTACGCGCTATTAGAACAGAAGGCGCTGTATATAGAAATGTTGCTTTGAAGCAATATTTGCAAAACACGCAGACTTCTGTATCTGTATTT

>In-frame_PTPRF_ENST00000438120_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_5516nt
GCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCAGCTCGG
GTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCGGGGGGACATGCGGA
CCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTGACCGGGGTGAAGAA
GCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGG
TGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACC
AGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGA
AAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATG
AAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCC
CTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATC
CAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCT
TGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGA
ACCTGTATGTGCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCTAATGCACCAGCTGTCGACCTAGACCATAAGTTTA
GATGCAAAGTTGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTATCACATGAAGTATTTCCATGGAATGGAGAAGTCAC
TGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCTTCAGACAAGCCCAGCCAGGAGACCCTGACCAGGA
AGCGGGTCTCTGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAGAAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGA
AGAAAAAGAAAAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATCAGTGACACCTCCCAGGAACCTTCTCCACCCAAGG
CATTTGCTGTTACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCGCAGCTTCATGGCCCAGAATCTGGACACCACAAAG
GGAAAGTGAAAGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTTCTCTGGAGTGATGATGAGTATGGCCAAGATGTGG
ATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAGGTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAA
ATGACTTCATGATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATGGGATTACTGGAAGAAAATGTGCCCGAGAAATACA
CCTGTTATGTTTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTATGACAAGGAGTGGCTGAGCAGGGGACATATGCATG
GCCTGGCATTTCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCCACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGA
TTGAGGTTCTGCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCATCCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAAC
AGCACTCAGGGGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGGAGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGA
ACGGGGCAGTGGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAGGAATCCTATATCACCAGTGAGCATTGCTACCAGA
AGCCCCGCGCCTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGCTCTGCCCTCGACGATGCGGTCAACCCCCTCCATG
AGAACGGCGATGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGGAGCAAGGGGGACAGTGACCCCAAACCCGGCTCCC
CAAAGGTGAAGGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGGAAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGA
GCTCCCAGCACCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGATGAAGTTACGCACAGGATGGACTCCATTGAGAAGG
AGTTGGATGTGTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAGCCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTA
TCAAGCAGCTGCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCAACATGAAACTGGGCACCCAAAACTCATGGGGGCA
CAATCCTGGGGCACCTGCAGGAGGAGCTTCGCATATTTAAATAAATAAACCTAGCATGCTGAATGCACGTGACACCGACTGACTTCAGGG
ATCTGGGCCAGGAGTGTGGTGGACATTGGACAAAGAGGCCATTTTGGCTGCGGGAGGACACTCTGATCTCGAAGCCTGCCATAAAGGTAG
CAAATAGACTCTTGGGATTCCCCTCTTCTGTGCACATCGTTGAATGAAGAGAGTCTTTTTGCACAAACTTCACTTGAAATTGTGCCACTG
ATGATAAACGGAATGAGAGCCAAAAAAGTTTAGTTGGAGACAGTTGTAAATTCAATTTGGAGTTTATTTAATTGACTTTTCTATCACGTT
GGGGCACATGCCAACTCCCTGGTTTCTTCCTGGCATGGTGTTTGGGCAGCAGGCATCATTTTCCTTTTCTAGCTTCATAGGAATATTGTG
AGCTCACCATGCTGTGGAGGTTGGGAAAGAGCAGAGTCTTGGCTGCCCTGCTTTCTCCTTAGGACTCTTCACTTTTCTCACCACATCTCT
TGCATGACTTCATGGTACTGGGGACAAGTTTGTATGCCTTCACCCCAGAGCTGGCTGGGTTATGGCTTTTGTAGCAGAGCCCATACAGCC
TATGGAAGAACTAGAATCTCACTCACAGTAATAAGAATCTAGGAGGAATTCCAAACCGAAGCAGGCAGGGTCTGGAACCCAAAGGACAGC
ATTTTCTACCCACTTCTTAATATTGACAGCTTCCCCGTTCTATTTAATGTCCAAAAATGTTTCCCAAAATTTCAAACTCTTTCACTGTAA
AGATTTGTTACAAAGAATGTGGTTTGGGGAATTACCTTATTTTATATTGTTGTAAACAAACTTCAAATTCTACATGTGCGACTTTTCTCC
TTCCTGAAGGGTGTTTAGTAGTCAGCGTTTTCAGAATTGTTTTGTTACTATACTTTAACATTTTACATTTCCTGTTTGTATTATTTTGTG
AGAGCAAGGTGATCATGCTGCTTAAGGTCCAGGTACAACCTATTTGTACCTTTTGAGACAATATTTGTGTTACTTTTGCAGGTTACGGTT
CCACATGTAATTGCTATATTTTGTTTTGTTTTTCCTTACTAGGCAAAGTTAAAATGTTCCATGCTTTGAGGAGTGACCCATTTCACTACT
TTGTTTTCTTATCACTAAAGGCAAAAATCAAAGCACAGTTGTCCATTAACACTTATAAGTTAATTATGGGTTTATGAGTCTGTAATGTTA
TATGCTGCAAACATTTACTATGTAAACGTGAAGTAGCCAATAATATCTCAATAGTAGTAACAGTATCTTTAGCGACCTTTGGAATAGTTA
AGCACAGGTCATTGTGGACATGAATTCAGGCCTCTGTACTAAAATCTATTTCAGGGAATGTTCTGTCTAGTGATTTGCTCACCATTTGAT
ATATAATGAATTATAGGACAAGTATAAGCTGATCTGCTATAGCTGTCCATCAGAGAGAATACACGTGGCTATAACATCTATAACAAAACG
ACGATTCCTCTACAAGAGGCTGTTTCTCACTGCTAACGTTGGTGTTTCTGGCGTGGGAAGAAATGCACAGGCGTGCATGGCATGCACGTT
CAGACAGCTGCATTGTAAGAGTTCTGTCATGCAGTCTGAAAAGGGAAGAAACAGGATGGCTTTCTGTAGCCACACCTGTGAGGCGTGATG
ATTGTTGTATTATTAGATTACTGATTTTTCTTTTCTGAAAATACATTTGAGTTTTAATCACATCTGTGGAAGCTGTAACTTTTAAGGTAG
TCAATTTCATGTCTTGTTCAACGATGTAAGCAGAAACTGAATTGCCCTAATTTTGCCAACTGGCCATTATTGGGATTATTGTTTAAATTT
TTGGTAAAGGAAGTAATCTCCTTTCATTCATTGTGACTTTTGTTCTTAGGGAAGCAGAGAAGACTCCCCAAGTTCTTATAACCTCATTGT
GCTTCCCTAATTTAAAGCCATGTTGAGGGGCTCCATTCCCAATTCCTGGGTCAAGGTGAATTAACCCTATGTTGGAGCACTGGAAACCGT
TATTTGCAAACATTGCTGTTACCATTTAGAAATATGTGCACTATCAGCTGGGTGCAGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAG
GCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAGGGTGAAACCCCGTCTCTACTAAAAGTACAAAAATT
AGCTGGGCGTGGTGGCGGACGCCTGTAATCTCAGCTACTTGGGAGGCTGAAGCAGGAGAGGTGCTGGAACCTGGGAGGCGGAGGTTGAAG
TGAGCCGAGATTGCGCTATTGCACTCCAGCTCGGGCGACAACTGCAAGACTCCATCTCAAAAAAATAAAAATAAAAGAAAAGAAAGAAAT
ATGTGCACTACCTAAGTTTTGTCTTTAGAAAAACTATCCACCTATAAAAAATTACCTTGACAAAAATAGTTCCGGTTTGACTAATCATTT
TGTTTCTTTAAGTGGTAAGTGTATGCAAGGTGGATCCTTGATGAGCCAACATTGCACTGTGGATACATATCTATGTTTACGCGCTATTAG
AACAGAAGGCGCTGTATATAGAAATGTTGCTTTGAAGCAATATTTGCAAAACACGCAGACTTCTGTATCTGTATTTGGAAAAAATAAAAC

>In-frame_PTPRF_ENST00000372413_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_5236nt
GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT
GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT
GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC
CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA
TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC
TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA
GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA
GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT
GCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCTAATGCACCAGCTGTCGACCTAGACCATAAGTTTAGATGCAAAGT
TGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTATCACATGAAGTATTTCCATGGAATGGAGAAGTCACTGGAGCCAGA
AGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCTTCAGACAAGCCCAGCCAGGAGACCCTGACCAGGAAGCGGGTCTC
TGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAGAAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAA
AAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATCAGTGACACCTCCCAGGAACCTTCTCCACCCAAGGCATTTGCTGT
TACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCGCAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAGTGAA
AGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTTCTCTGGAGTGATGATGAGTATGGCCAAGATGTGGATGTGACCAC
CAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAGGTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCAT
GATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATGGGATTACTGGAAGAAAATGTGCCCGAGAAATACACCTGTTATGT
TTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTATGACAAGGAGTGGCTGAGCAGGGGACATATGCATGGCCTGGCATT
TCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCCACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGATTGAGGTTCT
GCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCATCCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAACAGCACTCAGG
GGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGGAGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGAACGGGGCAGT
GGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAGGAATCCTATATCACCAGTGAGCATTGCTACCAGAAGCCCCGCGC
CTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGCTCTGCCCTCGACGATGCGGTCAACCCCCTCCATGAGAACGGCGA
TGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGGAGCAAGGGGGACAGTGACCCCAAACCCGGCTCCCCAAAGGTGAA
GGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGGAAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGAGCTCCCAGCA
CCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGATGAAGTTACGCACAGGATGGACTCCATTGAGAAGGAGTTGGATGT
GTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAGCCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTATCAAGCAGCT
GCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCAACATGAAACTGGGCACCCAAAACTCATGGGGGCACAATCCTGGG
GCACCTGCAGGAGGAGCTTCGCATATTTAAATAAATAAACCTAGCATGCTGAATGCACGTGACACCGACTGACTTCAGGGATCTGGGCCA
GGAGTGTGGTGGACATTGGACAAAGAGGCCATTTTGGCTGCGGGAGGACACTCTGATCTCGAAGCCTGCCATAAAGGTAGCAAATAGACT
CTTGGGATTCCCCTCTTCTGTGCACATCGTTGAATGAAGAGAGTCTTTTTGCACAAACTTCACTTGAAATTGTGCCACTGATGATAAACG
GAATGAGAGCCAAAAAAGTTTAGTTGGAGACAGTTGTAAATTCAATTTGGAGTTTATTTAATTGACTTTTCTATCACGTTGGGGCACATG
CCAACTCCCTGGTTTCTTCCTGGCATGGTGTTTGGGCAGCAGGCATCATTTTCCTTTTCTAGCTTCATAGGAATATTGTGAGCTCACCAT
GCTGTGGAGGTTGGGAAAGAGCAGAGTCTTGGCTGCCCTGCTTTCTCCTTAGGACTCTTCACTTTTCTCACCACATCTCTTGCATGACTT
CATGGTACTGGGGACAAGTTTGTATGCCTTCACCCCAGAGCTGGCTGGGTTATGGCTTTTGTAGCAGAGCCCATACAGCCTATGGAAGAA
CTAGAATCTCACTCACAGTAATAAGAATCTAGGAGGAATTCCAAACCGAAGCAGGCAGGGTCTGGAACCCAAAGGACAGCATTTTCTACC
CACTTCTTAATATTGACAGCTTCCCCGTTCTATTTAATGTCCAAAAATGTTTCCCAAAATTTCAAACTCTTTCACTGTAAAGATTTGTTA
CAAAGAATGTGGTTTGGGGAATTACCTTATTTTATATTGTTGTAAACAAACTTCAAATTCTACATGTGCGACTTTTCTCCTTCCTGAAGG
GTGTTTAGTAGTCAGCGTTTTCAGAATTGTTTTGTTACTATACTTTAACATTTTACATTTCCTGTTTGTATTATTTTGTGAGAGCAAGGT
GATCATGCTGCTTAAGGTCCAGGTACAACCTATTTGTACCTTTTGAGACAATATTTGTGTTACTTTTGCAGGTTACGGTTCCACATGTAA
TTGCTATATTTTGTTTTGTTTTTCCTTACTAGGCAAAGTTAAAATGTTCCATGCTTTGAGGAGTGACCCATTTCACTACTTTGTTTTCTT
ATCACTAAAGGCAAAAATCAAAGCACAGTTGTCCATTAACACTTATAAGTTAATTATGGGTTTATGAGTCTGTAATGTTATATGCTGCAA
ACATTTACTATGTAAACGTGAAGTAGCCAATAATATCTCAATAGTAGTAACAGTATCTTTAGCGACCTTTGGAATAGTTAAGCACAGGTC
ATTGTGGACATGAATTCAGGCCTCTGTACTAAAATCTATTTCAGGGAATGTTCTGTCTAGTGATTTGCTCACCATTTGATATATAATGAA
TTATAGGACAAGTATAAGCTGATCTGCTATAGCTGTCCATCAGAGAGAATACACGTGGCTATAACATCTATAACAAAACGACGATTCCTC
TACAAGAGGCTGTTTCTCACTGCTAACGTTGGTGTTTCTGGCGTGGGAAGAAATGCACAGGCGTGCATGGCATGCACGTTCAGACAGCTG
CATTGTAAGAGTTCTGTCATGCAGTCTGAAAAGGGAAGAAACAGGATGGCTTTCTGTAGCCACACCTGTGAGGCGTGATGATTGTTGTAT
TATTAGATTACTGATTTTTCTTTTCTGAAAATACATTTGAGTTTTAATCACATCTGTGGAAGCTGTAACTTTTAAGGTAGTCAATTTCAT
GTCTTGTTCAACGATGTAAGCAGAAACTGAATTGCCCTAATTTTGCCAACTGGCCATTATTGGGATTATTGTTTAAATTTTTGGTAAAGG
AAGTAATCTCCTTTCATTCATTGTGACTTTTGTTCTTAGGGAAGCAGAGAAGACTCCCCAAGTTCTTATAACCTCATTGTGCTTCCCTAA
TTTAAAGCCATGTTGAGGGGCTCCATTCCCAATTCCTGGGTCAAGGTGAATTAACCCTATGTTGGAGCACTGGAAACCGTTATTTGCAAA
CATTGCTGTTACCATTTAGAAATATGTGCACTATCAGCTGGGTGCAGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAG
GTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAGGGTGAAACCCCGTCTCTACTAAAAGTACAAAAATTAGCTGGGCGT
GGTGGCGGACGCCTGTAATCTCAGCTACTTGGGAGGCTGAAGCAGGAGAGGTGCTGGAACCTGGGAGGCGGAGGTTGAAGTGAGCCGAGA
TTGCGCTATTGCACTCCAGCTCGGGCGACAACTGCAAGACTCCATCTCAAAAAAATAAAAATAAAAGAAAAGAAAGAAATATGTGCACTA
CCTAAGTTTTGTCTTTAGAAAAACTATCCACCTATAAAAAATTACCTTGACAAAAATAGTTCCGGTTTGACTAATCATTTTGTTTCTTTA
AGTGGTAAGTGTATGCAAGGTGGATCCTTGATGAGCCAACATTGCACTGTGGATACATATCTATGTTTACGCGCTATTAGAACAGAAGGC
GCTGTATATAGAAATGTTGCTTTGAAGCAATATTTGCAAAACACGCAGACTTCTGTATCTGTATTTGGAAAAAATAAAACAGGTTCTTGT

>In-frame_PTPRF_ENST00000372414_chr1_44044591_+_PHF20_ENST00000374012_chr20_34487292_+_5236nt
GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT
GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT
GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC
CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA
TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC
TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA
GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA
GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT
GCGAGTAACAAATACTTTTAAGAAAACAGATGATTTTGGGTCATCTAATGCACCAGCTGTCGACCTAGACCATAAGTTTAGATGCAAAGT
TGTGGACTGTTTAAAATTTTTCCGCAAAGCCAAACTGTTGCACTATCACATGAAGTATTTCCATGGAATGGAGAAGTCACTGGAGCCAGA
AGAGAGCCCGGGAAAGAGGCATGTCCAAACCAGGGGCCCTTCAGCTTCAGACAAGCCCAGCCAGGAGACCCTGACCAGGAAGCGGGTCTC
TGCCAGTTCCCCAACTACAAAAGACAAGGAAAAGAATAAAGAGAAGAAATTCAAGGAGTTTGTGAGAGTGAAGCCAAAGAAGAAAAAGAA
AAAGAAAAAGAAAACCAAACCTGAATGCCCCTGCAGTGAGGAGATCAGTGACACCTCCCAGGAACCTTCTCCACCCAAGGCATTTGCTGT
TACCAGGTGTGGGTCCTCACACAAGCCAGGGGTCCATATGAGCCCGCAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAGTGAA
AGCATTGGAGGAGGATAATTTGAGTGAGTCCTCTTCTGAGAGCTTTCTCTGGAGTGATGATGAGTATGGCCAAGATGTGGATGTGACCAC
CAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAGGTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCAT
GATTCAGTGTGAAGAGTGCCAGTGCTGGCAGCATGGGGTCTGCATGGGATTACTGGAAGAAAATGTGCCCGAGAAATACACCTGTTATGT
TTGCCAAGACCCTCCAGGTCAGAGGCCTGGCTTCAAGTACTGGTATGACAAGGAGTGGCTGAGCAGGGGACATATGCATGGCCTGGCATT
TCTAGAAGAGAACTACTCCCATCAGAATGCCAAGAAGATCGTGGCCACCCACCAGCTTCTTGGTGATGTGCAGAGAGTGATTGAGGTTCT
GCATGGCCTGCAGCTCAAGATGAGCATCTTGCAAAGCCGGGAGCATCCTGATCTGCCGCTGTGGTGCCAGCCTTGGAAACAGCACTCAGG
GGAGGGGAGATCTCATTTCAGAAACATCCCTGTCACTGACACCAGGAGCAAGGAGGAAGCTCCAAGCTATAGAACTTTGAACGGGGCAGT
GGAGAAGCCCAGGCCCCTGGCCCTGCCCCTGCCGCGTTCTGTGGAGGAATCCTATATCACCAGTGAGCATTGCTACCAGAAGCCCCGCGC
CTATTACCCTGCCGTGGAGCAGAAGCTGGTGGTGGAGACGAGGGGCTCTGCCCTCGACGATGCGGTCAACCCCCTCCATGAGAACGGCGA
TGATTCCCTTTCCCCGCGCCTGGGCTGGCCTCTAGACCAAGACAGGAGCAAGGGGGACAGTGACCCCAAACCCGGCTCCCCAAAGGTGAA
GGAATATGTCTCCAAAAAGGCCCTACCAGAAGAAGCCCCTGCTCGGAAGCTGCTGGACAGAGGTGGAGAGGGGCTGCTGAGCTCCCAGCA
CCAGTGGCAGTTTAACCTGCTGACCCATGTGGAATCTCTTCAGGATGAAGTTACGCACAGGATGGACTCCATTGAGAAGGAGTTGGATGT
GTTGGAGAGCTGGCTGGACTACACTGGGGAACTGGAGCCCCCTGAGCCGCTGGCCAGGCTTCCGCAGCTCAAGCATTGTATCAAGCAGCT
GCTGATGGACCTGGGCAAGGTGCAGCAGATCGCCCTCTGCTGCTCAACATGAAACTGGGCACCCAAAACTCATGGGGGCACAATCCTGGG
GCACCTGCAGGAGGAGCTTCGCATATTTAAATAAATAAACCTAGCATGCTGAATGCACGTGACACCGACTGACTTCAGGGATCTGGGCCA
GGAGTGTGGTGGACATTGGACAAAGAGGCCATTTTGGCTGCGGGAGGACACTCTGATCTCGAAGCCTGCCATAAAGGTAGCAAATAGACT
CTTGGGATTCCCCTCTTCTGTGCACATCGTTGAATGAAGAGAGTCTTTTTGCACAAACTTCACTTGAAATTGTGCCACTGATGATAAACG
GAATGAGAGCCAAAAAAGTTTAGTTGGAGACAGTTGTAAATTCAATTTGGAGTTTATTTAATTGACTTTTCTATCACGTTGGGGCACATG
CCAACTCCCTGGTTTCTTCCTGGCATGGTGTTTGGGCAGCAGGCATCATTTTCCTTTTCTAGCTTCATAGGAATATTGTGAGCTCACCAT
GCTGTGGAGGTTGGGAAAGAGCAGAGTCTTGGCTGCCCTGCTTTCTCCTTAGGACTCTTCACTTTTCTCACCACATCTCTTGCATGACTT
CATGGTACTGGGGACAAGTTTGTATGCCTTCACCCCAGAGCTGGCTGGGTTATGGCTTTTGTAGCAGAGCCCATACAGCCTATGGAAGAA
CTAGAATCTCACTCACAGTAATAAGAATCTAGGAGGAATTCCAAACCGAAGCAGGCAGGGTCTGGAACCCAAAGGACAGCATTTTCTACC
CACTTCTTAATATTGACAGCTTCCCCGTTCTATTTAATGTCCAAAAATGTTTCCCAAAATTTCAAACTCTTTCACTGTAAAGATTTGTTA
CAAAGAATGTGGTTTGGGGAATTACCTTATTTTATATTGTTGTAAACAAACTTCAAATTCTACATGTGCGACTTTTCTCCTTCCTGAAGG
GTGTTTAGTAGTCAGCGTTTTCAGAATTGTTTTGTTACTATACTTTAACATTTTACATTTCCTGTTTGTATTATTTTGTGAGAGCAAGGT
GATCATGCTGCTTAAGGTCCAGGTACAACCTATTTGTACCTTTTGAGACAATATTTGTGTTACTTTTGCAGGTTACGGTTCCACATGTAA
TTGCTATATTTTGTTTTGTTTTTCCTTACTAGGCAAAGTTAAAATGTTCCATGCTTTGAGGAGTGACCCATTTCACTACTTTGTTTTCTT
ATCACTAAAGGCAAAAATCAAAGCACAGTTGTCCATTAACACTTATAAGTTAATTATGGGTTTATGAGTCTGTAATGTTATATGCTGCAA
ACATTTACTATGTAAACGTGAAGTAGCCAATAATATCTCAATAGTAGTAACAGTATCTTTAGCGACCTTTGGAATAGTTAAGCACAGGTC
ATTGTGGACATGAATTCAGGCCTCTGTACTAAAATCTATTTCAGGGAATGTTCTGTCTAGTGATTTGCTCACCATTTGATATATAATGAA
TTATAGGACAAGTATAAGCTGATCTGCTATAGCTGTCCATCAGAGAGAATACACGTGGCTATAACATCTATAACAAAACGACGATTCCTC
TACAAGAGGCTGTTTCTCACTGCTAACGTTGGTGTTTCTGGCGTGGGAAGAAATGCACAGGCGTGCATGGCATGCACGTTCAGACAGCTG
CATTGTAAGAGTTCTGTCATGCAGTCTGAAAAGGGAAGAAACAGGATGGCTTTCTGTAGCCACACCTGTGAGGCGTGATGATTGTTGTAT
TATTAGATTACTGATTTTTCTTTTCTGAAAATACATTTGAGTTTTAATCACATCTGTGGAAGCTGTAACTTTTAAGGTAGTCAATTTCAT
GTCTTGTTCAACGATGTAAGCAGAAACTGAATTGCCCTAATTTTGCCAACTGGCCATTATTGGGATTATTGTTTAAATTTTTGGTAAAGG
AAGTAATCTCCTTTCATTCATTGTGACTTTTGTTCTTAGGGAAGCAGAGAAGACTCCCCAAGTTCTTATAACCTCATTGTGCTTCCCTAA
TTTAAAGCCATGTTGAGGGGCTCCATTCCCAATTCCTGGGTCAAGGTGAATTAACCCTATGTTGGAGCACTGGAAACCGTTATTTGCAAA
CATTGCTGTTACCATTTAGAAATATGTGCACTATCAGCTGGGTGCAGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAG
GTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAGGGTGAAACCCCGTCTCTACTAAAAGTACAAAAATTAGCTGGGCGT
GGTGGCGGACGCCTGTAATCTCAGCTACTTGGGAGGCTGAAGCAGGAGAGGTGCTGGAACCTGGGAGGCGGAGGTTGAAGTGAGCCGAGA
TTGCGCTATTGCACTCCAGCTCGGGCGACAACTGCAAGACTCCATCTCAAAAAAATAAAAATAAAAGAAAAGAAAGAAATATGTGCACTA
CCTAAGTTTTGTCTTTAGAAAAACTATCCACCTATAAAAAATTACCTTGACAAAAATAGTTCCGGTTTGACTAATCATTTTGTTTCTTTA
AGTGGTAAGTGTATGCAAGGTGGATCCTTGATGAGCCAACATTGCACTGTGGATACATATCTATGTTTACGCGCTATTAGAACAGAAGGC
GCTGTATATAGAAATGTTGCTTTGAAGCAATATTTGCAAAACACGCAGACTTCTGTATCTGTATTTGGAAAAAATAAAACAGGTTCTTGT


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FusionGenePPI for PTPRF_PHF20


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PTPRFCTNNB1, GIT1, PPFIA1, RET, TRIO, CAV1, NID1, JUP, PPFIA3, PPFIA2, RYK, PRPF40A, SKIL, ZNF512B, EGFR, CUL7, ABCE1, CEACAM21, TGFBR2, SCN2B, HEPACAM2, UNK, NTRK1, ADRBK1, DNAAF5, NAA50, NPLOC4, PFKM, PICALM, PPWD1, ARPC3, HACL1, MAPK1, PPP2R5D, SEPHS1, TSTA3, UFD1L, CDKN2AIP, NUDCD3, TTI1, FAM171A2, SUGT1, PTPRS, WFDC2, IL13RA2, CLU, LRRIQ1, TMEM30B, PCDHGB1, ATP6V0E1, MANSC1, PCDHB16, MRAP2, PIANP, TRIM25PHF20KAT8, HIST1H3A, HIST1H4A, DDX42, PATL1, TP53, MOV10, NXF1, POLE3, TFG, KANSL1, KANSL3, KANSL2, MCRS1, PTPN14, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PTPRF_PHF20


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PTPRF_PHF20


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePTPRFC0038356Stomach Neoplasms1CTD_human
HgenePTPRFC0345967Malignant mesothelioma1CTD_human