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Fusion gene ID: 29504 |
FusionGeneSummary for PTPRF_DHRS4L2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PTPRF_DHRS4L2 | Fusion gene ID: 29504 | Hgene | Tgene | Gene symbol | PTPRF | DHRS4L2 | Gene ID | 5792 | 317749 |
Gene name | protein tyrosine phosphatase, receptor type F | dehydrogenase/reductase 4 like 2 | |
Synonyms | BNAH2|LAR | SDR25C3 | |
Cytomap | 1p34.2 | 14q11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | receptor-type tyrosine-protein phosphatase FLCA-homologleukocyte antigen-related (LAR) PTP receptorleukocyte antigen-related tyrosine phosphataseleukocyte common antigen relatedprotein tyrosine phosphatase, receptor type, F polypeptidereceptor-linke | dehydrogenase/reductase SDR family member 4-like 2NADP(H)-dependent retinol dehydrogenase/reductase short isoform-like proteinNADPH-dependent retinol dehydrogenase/reductase-like protein 2dehydrogenase/reductase (SDR family) member 4 like 2dehydrogena | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | P10586 | Q6PKH6 | |
Ensembl transtripts involved in fusion gene | ENST00000359947, ENST00000438120, ENST00000372413, ENST00000372414, ENST00000422171, ENST00000496447, | ENST00000534993, ENST00000543805, ENST00000397071, ENST00000335125, ENST00000558753, ENST00000537912, ENST00000545240, ENST00000382755, | |
Fusion gene scores | * DoF score | 10 X 9 X 7=630 | 3 X 3 X 3=27 |
# samples | 11 | 3 | |
** MAII score | log2(11/630*10)=-2.51784830486262 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PTPRF [Title/Abstract] AND DHRS4L2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | READ | TCGA-AF-2693-01A | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000359947 | ENST00000534993 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000543805 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000397071 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000335125 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000558753 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000537912 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000545240 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000359947 | ENST00000382755 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
In-frame | ENST00000438120 | ENST00000534993 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000543805 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000397071 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000335125 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000558753 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000537912 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000545240 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000438120 | ENST00000382755 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
In-frame | ENST00000372413 | ENST00000534993 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000543805 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000397071 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000335125 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000558753 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000537912 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000545240 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372413 | ENST00000382755 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
In-frame | ENST00000372414 | ENST00000534993 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000543805 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000397071 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000335125 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000558753 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000537912 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000545240 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000372414 | ENST00000382755 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
In-frame | ENST00000422171 | ENST00000534993 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000543805 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000397071 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000335125 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000558753 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000537912 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000545240 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
5CDS-intron | ENST00000422171 | ENST00000382755 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-3CDS | ENST00000496447 | ENST00000534993 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000543805 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000397071 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000335125 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000558753 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000537912 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000545240 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
3UTR-intron | ENST00000496447 | ENST00000382755 | PTPRF | chr1 | 44064584 | + | DHRS4L2 | chr14 | 24464241 | + |
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FusionProtFeatures for PTPRF_DHRS4L2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
PTPRF | DHRS4L2 |
Possible cell adhesion receptor. It possesses anintrinsic protein tyrosine phosphatase activity (PTPase) anddephosphorylates EPHA2 regulating its activity. The first PTPase domain has enzymatic activity, whilethe second one seems to affect the substrate specificity of thefirst one. | Probable oxidoreductase. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 135_224 | 771 | 1908 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 232_314 | 771 | 1908 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 321_411 | 771 | 1908 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 33_123 | 771 | 1908 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 416_510 | 771 | 1908 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 514_604 | 771 | 1908 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 609_706 | 771 | 1908 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 135_224 | 771 | 1899 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 232_314 | 771 | 1899 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 321_411 | 771 | 1899 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 33_123 | 771 | 1899 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 416_510 | 771 | 1899 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 514_604 | 771 | 1899 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 609_706 | 771 | 1899 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 135_224 | 771 | 1908 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 232_314 | 771 | 1908 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 321_411 | 771 | 1908 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 33_123 | 771 | 1908 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 416_510 | 771 | 1908 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 514_604 | 771 | 1908 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 609_706 | 771 | 1908 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 135_224 | 771 | 1899 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 232_314 | 771 | 1899 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 321_411 | 771 | 1899 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 33_123 | 771 | 1899 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 416_510 | 771 | 1899 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 514_604 | 771 | 1899 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 609_706 | 771 | 1899 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 68_77 | 771 | 1908 | Region | Heparin-binding |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 68_77 | 771 | 1899 | Region | Heparin-binding |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 68_77 | 771 | 1908 | Region | Heparin-binding |
Hgene | PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 68_77 | 771 | 1899 | Region | Heparin-binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 1014_1098 | 771 | 1908 | Domain | Fibronectin type-III 8 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 1352_1607 | 771 | 1908 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 1639_1898 | 771 | 1908 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 711_819 | 771 | 1908 | Domain | Fibronectin type-III 5 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 820_914 | 771 | 1908 | Domain | Fibronectin type-III 6 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 918_1010 | 771 | 1908 | Domain | Fibronectin type-III 7 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 1014_1098 | 771 | 1899 | Domain | Fibronectin type-III 8 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 1352_1607 | 771 | 1899 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 1639_1898 | 771 | 1899 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 711_819 | 771 | 1899 | Domain | Fibronectin type-III 5 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 820_914 | 771 | 1899 | Domain | Fibronectin type-III 6 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 918_1010 | 771 | 1899 | Domain | Fibronectin type-III 7 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 1014_1098 | 771 | 1908 | Domain | Fibronectin type-III 8 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 1352_1607 | 771 | 1908 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 1639_1898 | 771 | 1908 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 711_819 | 771 | 1908 | Domain | Fibronectin type-III 5 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 820_914 | 771 | 1908 | Domain | Fibronectin type-III 6 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 918_1010 | 771 | 1908 | Domain | Fibronectin type-III 7 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 1014_1098 | 771 | 1899 | Domain | Fibronectin type-III 8 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 1352_1607 | 771 | 1899 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 1639_1898 | 771 | 1899 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 711_819 | 771 | 1899 | Domain | Fibronectin type-III 5 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 820_914 | 771 | 1899 | Domain | Fibronectin type-III 6 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 918_1010 | 771 | 1899 | Domain | Fibronectin type-III 7 |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 1548_1554 | 771 | 1908 | Region | Substrate binding |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 1548_1554 | 771 | 1899 | Region | Substrate binding |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 1548_1554 | 771 | 1908 | Region | Substrate binding |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 1548_1554 | 771 | 1899 | Region | Substrate binding |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 1285_1907 | 771 | 1908 | Topological domain | Cytoplasmic |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 30_1263 | 771 | 1908 | Topological domain | Extracellular |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 1285_1907 | 771 | 1899 | Topological domain | Cytoplasmic |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 30_1263 | 771 | 1899 | Topological domain | Extracellular |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 1285_1907 | 771 | 1908 | Topological domain | Cytoplasmic |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 30_1263 | 771 | 1908 | Topological domain | Extracellular |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 1285_1907 | 771 | 1899 | Topological domain | Cytoplasmic |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 30_1263 | 771 | 1899 | Topological domain | Extracellular |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000359947 | + | 13 | 34 | 1264_1284 | 771 | 1908 | Transmembrane | Helical |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372413 | + | 11 | 31 | 1264_1284 | 771 | 1899 | Transmembrane | Helical |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000372414 | + | 11 | 32 | 1264_1284 | 771 | 1908 | Transmembrane | Helical |
Hgene | >PTPRF | chr1:44064584 | chr14:24464241 | ENST00000438120 | + | 13 | 33 | 1264_1284 | 771 | 1899 | Transmembrane | Helical |
Tgene | DHRS4L2 | chr1:44064584 | chr14:24464241 | ENST00000335125 | + | 1 | 8 | 34_58 | 102 | 322 | Nucleotide binding | NADP |
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FusionGeneSequence for PTPRF_DHRS4L2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PTPRF_ENST00000359947_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_862aa MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE ELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTE GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVY YTPDSRRPPNAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADFQAEVESDTRIQLSWLLPPQERI IMYELVYWAAEDEDQQHKVTFDPTSSYTLEDLKPDTLYRFQLAARSDMGVGVFTPTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPP PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPL NSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKLWMDK >In-frame_PTPRF_ENST00000438120_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_862aa MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE ELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTE GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVY YTPDSRRPPNAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADFQAEVESDTRIQLSWLLPPQERI IMYELVYWAAEDEDQQHKVTFDPTSSYTLEDLKPDTLYRFQLAARSDMGVGVFTPTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPP PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPL NSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKLWMDK >In-frame_PTPRF_ENST00000372413_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_862aa MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE ELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTE GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVY YTPDSRRPPNAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADFQAEVESDTRIQLSWLLPPQERI IMYELVYWAAEDEDQQHKVTFDPTSSYTLEDLKPDTLYRFQLAARSDMGVGVFTPTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPP PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPL NSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKLWMDK >In-frame_PTPRF_ENST00000372414_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_862aa MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATS NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE ELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTE GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVY YTPDSRRPPNAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADFQAEVESDTRIQLSWLLPPQERI IMYELVYWAAEDEDQQHKVTFDPTSSYTLEDLKPDTLYRFQLAARSDMGVGVFTPTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPP PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPL NSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKLWMDK >In-frame_PTPRF_ENST00000422171_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_219aa MYELVYWAAEDEDQQHKVTFDPTSSYTLEDLKPDTLYRFQLAARSDMGVGVFTPTIEARTAQSMPSGPPRKVEVEPLNSTAVHVYWKLPV PSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKLWMDKEKEESMKETLRIR |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PTPRF_ENST00000359947_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_2586nt ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGC CAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAG GAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCC ATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGTGAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACA ACTGCCACCAGTGTCACCCTCACCTGGGACTCTGGGAACTCGGAGCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAG GGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTG GCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCGAGGCAGTGCGGGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTG CAGGCACGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGAGCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTAC TATACTCCGGACTCCCGCCGCCCCCCGAACGCCTGGCACAAGCACAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCT GGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGA GTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATC ATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAG GACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGC ACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGAAGGTGATGTGTGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCG CCTGCCGACAGCCGCAACGGCGTTATCACCCAGTACTCCGTGGCCTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGAT GGCATCAGCCGTGAGCACTCCAGCTGGGACCTGGTGGGCCTGGAGAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTG GGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGCGCACCGATGAGGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTG AACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGG CTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGAT ATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAG GAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCT >In-frame_PTPRF_ENST00000438120_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_2586nt ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGC CAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAG GAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCC ATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGTGAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACA ACTGCCACCAGTGTCACCCTCACCTGGGACTCTGGGAACTCGGAGCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAG GGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTG GCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCGAGGCAGTGCGGGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTG CAGGCACGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGAGCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTAC TATACTCCGGACTCCCGCCGCCCCCCGAACGCCTGGCACAAGCACAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCT GGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGA GTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATC ATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAG GACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGC ACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGAAGGTGATGTGTGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCG CCTGCCGACAGCCGCAACGGCGTTATCACCCAGTACTCCGTGGCCTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGAT GGCATCAGCCGTGAGCACTCCAGCTGGGACCTGGTGGGCCTGGAGAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTG GGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGCGCACCGATGAGGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTG AACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGG CTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGAT ATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAG GAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCT >In-frame_PTPRF_ENST00000372413_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_2586nt ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGC CAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAG GAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCC ATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGTGAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACA ACTGCCACCAGTGTCACCCTCACCTGGGACTCTGGGAACTCGGAGCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAG GGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTG GCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCGAGGCAGTGCGGGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTG CAGGCACGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGAGCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTAC TATACTCCGGACTCCCGCCGCCCCCCGAACGCCTGGCACAAGCACAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCT GGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGA GTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATC ATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAG GACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGC ACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGAAGGTGATGTGTGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCG CCTGCCGACAGCCGCAACGGCGTTATCACCCAGTACTCCGTGGCCTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGAT GGCATCAGCCGTGAGCACTCCAGCTGGGACCTGGTGGGCCTGGAGAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTG GGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGCGCACCGATGAGGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTG AACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGG CTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGAT ATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAG GAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCT >In-frame_PTPRF_ENST00000372414_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_2586nt ATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGAC AGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCC AAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTG CTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCC AAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGC ACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGC AACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACC AACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGC CAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAG GAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCC ATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGTGAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACA ACTGCCACCAGTGTCACCCTCACCTGGGACTCTGGGAACTCGGAGCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAG GGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTG GCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCGAGGCAGTGCGGGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTG CAGGCACGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGAGCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTAC TATACTCCGGACTCCCGCCGCCCCCCGAACGCCTGGCACAAGCACAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCT GGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGA GTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATC ATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAG GACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGC ACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGAAGGTGATGTGTGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCG CCTGCCGACAGCCGCAACGGCGTTATCACCCAGTACTCCGTGGCCTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGAT GGCATCAGCCGTGAGCACTCCAGCTGGGACCTGGTGGGCCTGGAGAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTG GGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGCGCACCGATGAGGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTG AACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGG CTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGAT ATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAG GAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCT >In-frame_PTPRF_ENST00000422171_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_657nt ATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAGGAC CTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCACA GCCCAGTCCATGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTGAACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTC CCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGGCTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAA GACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGATATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGA AGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAGGAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGA AGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCTGAAGATGCCAGCTACATCACTGGGGAAACAGTGGTGGTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PTPRF_ENST00000359947_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_3325nt CGGGAGCGGCGGGAGCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTC CGGCTCCAGCTCGGGTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCG GGGGGACATGCGGACCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTG ACCGGGGTGAAGAAGCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCC AGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAA AGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGAT GAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCG GGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGA GGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGC CGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCT GCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTA CTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGG CAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGA GATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGAT CGAGGCCACAGCCCAGGTCACAGTGAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACAACTGCCACCAGTGTCACCCT CACCTGGGACTCTGGGAACTCGGAGCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAGGGCCCCTTTCAGGAGGTGGA TGGTGTGGCCACCACCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTGGCGGTGAACAGCATCGGGCG AGGGCCGCCCAGCGAGGCAGTGCGGGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTGCAGGCACGCATGCTGAGCGC CAGCACCATGCTGGTGCAGTGGGAGCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTACTATACTCCGGACTCCCGCCG CCCCCCGAACGCCTGGCACAAGCACAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCTGGCATCACCTACAGCCTGCG CGTGCTTGCCTTCACCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGAGTGCCTGCCCAGCCCGCGGA CTTCCAGGCCGAGGTGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATCATCATGTATGAACTGGTGTA CTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAGGACCTGAAGCCTGACACACT CTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCACAGCCCAGTCCACCCCCTC CGCCCCTCCCCAGAAGGTGATGTGTGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCGCCTGCCGACAGCCGCAACGG CGTTATCACCCAGTACTCCGTGGCCTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGATGGCATCAGCCGTGAGCACTC CAGCTGGGACCTGGTGGGCCTGGAGAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTGGGCCCCGGCCCCGAGAGCAG CCCGGTGCTGGTGCGCACCGATGAGGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTGAACTCCACTGCTGTGCATGT CTACTGGAAGCTGCCTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGGCTGGAGAATGGCGAGCCCCG TGGACTCCCCATCATCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGATATCCTAGTCTCCAATGCTGC TGTCAACCCTTTCTTTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAGGAAAAAGAGGAAAGCATGAA AGAAACCCTGCGGATAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCTGAAGATGCCAGCTACATCAC TGGGGAAACAGTGGTGGTGGGTGGAGGAACCCCGTCCCGCCTCTGAGGACCGGGAGACAGCCCACAGGCCAGAGTTGGGCTCTAGCTCCT GGTGCTGTTCCTGCATTCACCCACTGGCCTTTCCCACCTCTGCTCACCTTACTGTTCACCTCATCAAATCAGTTCTGCCCTGTGAAAAGA TCCAGCCTTCCCTGCCGTCAAGGTGGCGTCTTACTCGGGATTCCTGCTGTTGTTGTGGCCTTGGGTAAAGGCCTCCCCTGAGAACACAGG ACAGGCCTGCTGACAAGGCTGAGTCTACCTTGGCAAAGACCAAGATATTTTTTCCTGGGCCACTGGGGAATCTGAGGGGTGATGGGAGAG >In-frame_PTPRF_ENST00000438120_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_3311nt GCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCAGCTCGG GTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCGGGGGGACATGCGGA CCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTGACCGGGGTGAAGAA GCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGG TGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACC AGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGA AAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATG AAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCC CTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATC CAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCT TGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGA ACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGA CATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCC GCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCC AGGTCACAGTGAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACAACTGCCACCAGTGTCACCCTCACCTGGGACTCTG GGAACTCGGAGCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAGGGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCA CCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTGGCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCG AGGCAGTGCGGGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTGCAGGCACGCATGCTGAGCGCCAGCACCATGCTGG TGCAGTGGGAGCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTACTATACTCCGGACTCCCGCCGCCCCCCGAACGCCT GGCACAAGCACAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCTGGCATCACCTACAGCCTGCGCGTGCTTGCCTTCA CCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGAGTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGG TGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATCATCATGTATGAACTGGTGTACTGGGCGGCAGAGG ACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAGGACCTGAAGCCTGACACACTCTACCGCTTCCAGC TGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGA AGGTGATGTGTGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCGCCTGCCGACAGCCGCAACGGCGTTATCACCCAGT ACTCCGTGGCCTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGATGGCATCAGCCGTGAGCACTCCAGCTGGGACCTGG TGGGCCTGGAGAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTGGGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGC GCACCGATGAGGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTGAACTCCACTGCTGTGCATGTCTACTGGAAGCTGC CTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGGCTGGAGAATGGCGAGCCCCGTGGACTCCCCATCA TCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGATATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCT TTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAGGAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGA TAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCTGAAGATGCCAGCTACATCACTGGGGAAACAGTGG TGGTGGGTGGAGGAACCCCGTCCCGCCTCTGAGGACCGGGAGACAGCCCACAGGCCAGAGTTGGGCTCTAGCTCCTGGTGCTGTTCCTGC ATTCACCCACTGGCCTTTCCCACCTCTGCTCACCTTACTGTTCACCTCATCAAATCAGTTCTGCCCTGTGAAAAGATCCAGCCTTCCCTG CCGTCAAGGTGGCGTCTTACTCGGGATTCCTGCTGTTGTTGTGGCCTTGGGTAAAGGCCTCCCCTGAGAACACAGGACAGGCCTGCTGAC AAGGCTGAGTCTACCTTGGCAAAGACCAAGATATTTTTTCCTGGGCCACTGGGGAATCTGAGGGGTGATGGGAGAGAAGGAACCTGGAGT >In-frame_PTPRF_ENST00000372413_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_3031nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACAACTGCCACCAGTGTCACCCTCACCTGGGACTCTGGGAACTCGGA GCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAGGGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAG CATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTGGCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCGAGGCAGTGCG GGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTGCAGGCACGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGA GCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTACTATACTCCGGACTCCCGCCGCCCCCCGAACGCCTGGCACAAGCA CAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCTGGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGG CGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGAGTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGA CACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATCATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCA ACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAGGACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACG CTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGAAGGTGATGTG TGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCGCCTGCCGACAGCCGCAACGGCGTTATCACCCAGTACTCCGTGGC CTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGATGGCATCAGCCGTGAGCACTCCAGCTGGGACCTGGTGGGCCTGGA GAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTGGGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGCGCACCGATGA GGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTGAACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTCCCCAG CAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGGCTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAAGACGT CATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGATATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGAAGCCT AATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAGGAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGAAGGTT AGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCTGAAGATGCCAGCTACATCACTGGGGAAACAGTGGTGGTGGGTGG AGGAACCCCGTCCCGCCTCTGAGGACCGGGAGACAGCCCACAGGCCAGAGTTGGGCTCTAGCTCCTGGTGCTGTTCCTGCATTCACCCAC TGGCCTTTCCCACCTCTGCTCACCTTACTGTTCACCTCATCAAATCAGTTCTGCCCTGTGAAAAGATCCAGCCTTCCCTGCCGTCAAGGT GGCGTCTTACTCGGGATTCCTGCTGTTGTTGTGGCCTTGGGTAAAGGCCTCCCCTGAGAACACAGGACAGGCCTGCTGACAAGGCTGAGT CTACCTTGGCAAAGACCAAGATATTTTTTCCTGGGCCACTGGGGAATCTGAGGGGTGATGGGAGAGAAGGAACCTGGAGTGGAAGGAGCA >In-frame_PTPRF_ENST00000372414_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_3031nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGCTCTTCCAAAGCCTCCGATTGATCTTGTGGTGACAGAGACAACTGCCACCAGTGTCACCCTCACCTGGGACTCTGGGAACTCGGA GCCTGTAACCTACTATGGCATCCAGTACCGCGCAGCGGGCACGGAGGGCCCCTTTCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAG CATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGCTGGCGGTGAACAGCATCGGGCGAGGGCCGCCCAGCGAGGCAGTGCG GGCACGCACGGGAGAACAGGCGCCCTCCAGCCCACCGCGCCGCGTGCAGGCACGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGA GCCTCCCGAGGAGCCCAACGGCCTGGTGCGGGGATACCGCGTCTACTATACTCCGGACTCCCGCCGCCCCCCGAACGCCTGGCACAAGCA CAACACCGACGCGGGGCTCCTCACGACCGTGGGCAGCCTGCTGCCTGGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGG CGATGGCCCTCCCAGCCCCACCATCCAGGTCAAGACGCAGCAGGGAGTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGA CACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCTCAGGAGCGGATCATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCA ACAGCACAAGGTGACCTTCGACCCAACCTCCTCCTACACACTAGAGGACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACG CTCGGATATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCACAGCCCAGTCCACCCCCTCCGCCCCTCCCCAGAAGGTGATGTG TGTGAGCATGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCGCCGCCTGCCGACAGCCGCAACGGCGTTATCACCCAGTACTCCGTGGC CTACGAGGCGGTGGACGGCGAGGACCGCGGGCGGCATGTGGTGGATGGCATCAGCCGTGAGCACTCCAGCTGGGACCTGGTGGGCCTGGA GAAGTGGACGGAGTACCGGGTGTGGGTGCGGGCACACACAGACGTGGGCCCCGGCCCCGAGAGCAGCCCGGTGCTGGTGCGCACCGATGA GGACGTGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTGAACTCCACTGCTGTGCATGTCTACTGGAAGCTGCCTGTCCCCAG CAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGGCTGGAGAATGGCGAGCCCCGTGGACTCCCCATCATCCAAGACGT CATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGATATCCTAGTCTCCAATGCTGCTGTCAACCCTTTCTTTGGAAGCCT AATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAGGAAAAAGAGGAAAGCATGAAAGAAACCCTGCGGATAAGAAGGTT AGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCTGAAGATGCCAGCTACATCACTGGGGAAACAGTGGTGGTGGGTGG AGGAACCCCGTCCCGCCTCTGAGGACCGGGAGACAGCCCACAGGCCAGAGTTGGGCTCTAGCTCCTGGTGCTGTTCCTGCATTCACCCAC TGGCCTTTCCCACCTCTGCTCACCTTACTGTTCACCTCATCAAATCAGTTCTGCCCTGTGAAAAGATCCAGCCTTCCCTGCCGTCAAGGT GGCGTCTTACTCGGGATTCCTGCTGTTGTTGTGGCCTTGGGTAAAGGCCTCCCCTGAGAACACAGGACAGGCCTGCTGACAAGGCTGAGT CTACCTTGGCAAAGACCAAGATATTTTTTCCTGGGCCACTGGGGAATCTGAGGGGTGATGGGAGAGAAGGAACCTGGAGTGGAAGGAGCA >In-frame_PTPRF_ENST00000422171_chr1_44064584_+_DHRS4L2_ENST00000534993_chr14_24464241_+_1252nt CAGCCTGCTGCCTGGCATCACCTACAGCCTGCGCGTGCTTGCCTTCACCGCCGTGGGCGATGGCCCTCCCAGCCCCACCATCCAGGTCAA GACGCAGCAGGGAGTGCCTGCCCAGCCCGCGGACTTCCAGGCCGAGGTGGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCC TCAGGAGCGGATCATCATGTATGAACTGGTGTACTGGGCGGCAGAGGACGAAGACCAACAGCACAAGGTGACCTTCGACCCAACCTCCTC CTACACACTAGAGGACCTGAAGCCTGACACACTCTACCGCTTCCAGCTGGCTGCACGCTCGGATATGGGGGTGGGCGTCTTCACCCCCAC CATTGAGGCCCGCACAGCCCAGTCCATGCCCAGCGGGCCTCCGCGGAAGGTGGAGGTGGAGCCACTGAACTCCACTGCTGTGCATGTCTA CTGGAAGCTGCCTGTCCCCAGCAAGCAGCATGGCCAGATCCGCGGCTACCAGGTCACCTACGTGCGGCTGGAGAATGGCGAGCCCCGTGG ACTCCCCATCATCCAAGACGTCATGCTAGCCGAGGCCCAGGCTGTGAAGCTTCATGGAGGTATCGATATCCTAGTCTCCAATGCTGCTGT CAACCCTTTCTTTGGAAGCCTAATGGATGTCACCGAGGAGGTGTGGGACAAGCTCTGGATGGACAAGGAAAAAGAGGAAAGCATGAAAGA AACCCTGCGGATAAGAAGGTTAGGCGAGCCAGAGGATTGTGCTGGCATCGTGTCTTTCCTGTGCTCTGAAGATGCCAGCTACATCACTGG GGAAACAGTGGTGGTGGGTGGAGGAACCCCGTCCCGCCTCTGAGGACCGGGAGACAGCCCACAGGCCAGAGTTGGGCTCTAGCTCCTGGT GCTGTTCCTGCATTCACCCACTGGCCTTTCCCACCTCTGCTCACCTTACTGTTCACCTCATCAAATCAGTTCTGCCCTGTGAAAAGATCC AGCCTTCCCTGCCGTCAAGGTGGCGTCTTACTCGGGATTCCTGCTGTTGTTGTGGCCTTGGGTAAAGGCCTCCCCTGAGAACACAGGACA GGCCTGCTGACAAGGCTGAGTCTACCTTGGCAAAGACCAAGATATTTTTTCCTGGGCCACTGGGGAATCTGAGGGGTGATGGGAGAGAAG |
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FusionGenePPI for PTPRF_DHRS4L2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PTPRF | CTNNB1, GIT1, PPFIA1, RET, TRIO, CAV1, NID1, JUP, PPFIA3, PPFIA2, RYK, PRPF40A, SKIL, ZNF512B, EGFR, CUL7, ABCE1, CEACAM21, TGFBR2, SCN2B, HEPACAM2, UNK, NTRK1, ADRBK1, DNAAF5, NAA50, NPLOC4, PFKM, PICALM, PPWD1, ARPC3, HACL1, MAPK1, PPP2R5D, SEPHS1, TSTA3, UFD1L, CDKN2AIP, NUDCD3, TTI1, FAM171A2, SUGT1, PTPRS, WFDC2, IL13RA2, CLU, LRRIQ1, TMEM30B, PCDHGB1, ATP6V0E1, MANSC1, PCDHB16, MRAP2, PIANP, TRIM25 | DHRS4L2 | MTIF2, AARS2, DHRS4, ZZEF1, ACOT7, D2HGDH |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PTPRF_DHRS4L2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PTPRF_DHRS4L2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PTPRF | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Hgene | PTPRF | C0345967 | Malignant mesothelioma | 1 | CTD_human |