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Fusion gene ID: 2913 |
FusionGeneSummary for ASAP2_USP11 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ASAP2_USP11 | Fusion gene ID: 2913 | Hgene | Tgene | Gene symbol | ASAP2 | USP11 | Gene ID | 8853 | 8237 |
Gene name | ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 | ubiquitin specific peptidase 11 | |
Synonyms | AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 | UHX1 | |
Cytomap | 2p25.1|2p24 | Xp11.3 | |
Type of gene | protein-coding | protein-coding | |
Description | arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2PYK2 C terminus-associated proteincentaurin, beta 3development and differentiation-enhancing factor 2paxillin-associated protein with ARF GAP activity 3pyk2 C-terminus-associated p | ubiquitin carboxyl-terminal hydrolase 11deubiquitinating enzyme 11ubiquitin carboxyl-terminal hydrolase, X-linkedubiquitin thioesterase 11ubiquitin thiolesterase 11ubiquitin-specific processing protease 11 | |
Modification date | 20180522 | 20180522 | |
UniProtAcc | O43150 | P51784 | |
Ensembl transtripts involved in fusion gene | ENST00000281419, ENST00000315273, ENST00000491413, | ENST00000377107, ENST00000218348, | |
Fusion gene scores | * DoF score | 4 X 5 X 3=60 | 4 X 6 X 1=24 |
# samples | 6 | 7 | |
** MAII score | log2(6/60*10)=0 | log2(7/24*10)=1.54432051622381 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: ASAP2 [Title/Abstract] AND USP11 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | USP11 | GO:0016579 | protein deubiquitination | 15314155 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA220924 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000281419 | ENST00000377107 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
5CDS-5UTR | ENST00000281419 | ENST00000218348 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
5CDS-5UTR | ENST00000315273 | ENST00000377107 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
5CDS-5UTR | ENST00000315273 | ENST00000218348 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
intron-5UTR | ENST00000491413 | ENST00000377107 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
intron-5UTR | ENST00000491413 | ENST00000218348 | ASAP2 | chr2 | 9491016 | + | USP11 | chrX | 47092424 | + |
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FusionProtFeatures for ASAP2_USP11 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ASAP2 | USP11 |
Activates the small GTPases ARF1, ARF5 and ARF6.Regulates the formation of post-Golgi vesicles and modulatesconstitutive secretion. Modulates phagocytosis mediated by Fcgamma receptor and ARF6. Modulates PXN recruitment to focalcontacts and cell migration. {ECO:0000269|PubMed:10022920,ECO:0000269|PubMed:10749932, ECO:0000269|PubMed:11304556}. | Protease that can remove conjugated ubiquitin fromtarget proteins and polyubiquitin chains (PubMed:12084015,PubMed:15314155, PubMed:17897950, PubMed:19874889,PubMed:20233726, PubMed:24724799). Inhibits the degradation oftarget proteins by the proteasome (PubMed:12084015). Cleavespreferentially 'Lys-6' and 'Lys-63'-linked ubiquitin chains. Haslower activity with 'Lys-11' and 'Lys-33'-linked ubiquitin chains,and extremely low activity with 'Lys-27', 'Lys-29' and 'Lys-48'-linked ubiquitin chains (in vitro) (PubMed:24724799). Plays a rolein the regulation of pathways leading to NF-kappa-B activation(PubMed:17897950, PubMed:19874889). Plays a role in the regulationof DNA repair after double-stranded DNA breaks (PubMed:15314155,PubMed:20233726). Acts as a chromatin regulator via itsassociation with the Polycomb group (PcG) multiprotein PRC1-likecomplex; may act by deubiquitinating components of the PRC1-likecomplex (PubMed:20601937). {ECO:0000269|PubMed:15314155,ECO:0000269|PubMed:17897950, ECO:0000269|PubMed:18408009,ECO:0000269|PubMed:19874889, ECO:0000269|PubMed:20233726,ECO:0000269|PubMed:24724799}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ASAP2_USP11 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ASAP2_USP11 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ASAP2_USP11 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ASAP2_USP11 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |