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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 28811

FusionGeneSummary for PRLR_KDM3B

check button Fusion gene summary
Fusion gene informationFusion gene name: PRLR_KDM3B
Fusion gene ID: 28811
HgeneTgene
Gene symbol

PRLR

KDM3B

Gene ID

5618

51780

Gene nameprolactin receptorlysine demethylase 3B
SynonymsHPRL|MFAB|RI-PRLR|hPRLrI5qNCA|C5orf7|JMJD1B|NET22
Cytomap

5p13.2

5q31.2

Type of geneprotein-codingprotein-coding
Descriptionprolactin receptorhPRL receptorsecreted prolactin binding proteinlysine-specific demethylase 3BjmjC domain-containing histone demethylation protein 2Bjumonji domain containing 1Bjumonji domain-containing protein 1Blysine (K)-specific demethylase 3Bnuclear protein 5qNCA
Modification date2018052320180523
UniProtAcc

P16471

Q7LBC6

Ensembl transtripts involved in fusion geneENST00000342362, ENST00000382002, 
ENST00000231423, ENST00000513753, 
ENST00000397391, ENST00000348262, 
ENST00000542609, ENST00000310101, 
ENST00000511486, ENST00000509934, 
ENST00000314358, ENST00000394866, 
ENST00000542866, ENST00000508386, 
Fusion gene scores* DoF score7 X 4 X 4=1126 X 7 X 3=126
# samples 77
** MAII scorelog2(7/112*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/126*10)=-0.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PRLR [Title/Abstract] AND KDM3B [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePRLR

GO:0007171

activation of transmembrane receptor protein tyrosine kinase activity

10585417


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-A2-A04U-01APRLRchr5

35230370

-KDM3Bchr5

137708363

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000342362ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-intronENST00000342362ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-intronENST00000342362ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-intronENST00000342362ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-3CDSENST00000382002ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-intronENST00000382002ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-intronENST00000382002ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
5UTR-intronENST00000382002ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000231423ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000231423ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000231423ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000231423ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000513753ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000513753ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000513753ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000513753ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000397391ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000397391ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000397391ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000397391ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000348262ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000348262ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000348262ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000348262ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000542609ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000542609ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000542609ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000542609ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000310101ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000310101ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000310101ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000310101ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000511486ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000511486ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000511486ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000511486ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-3CDSENST00000509934ENST00000314358PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000509934ENST00000394866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000509934ENST00000542866PRLRchr5

35230370

-KDM3Bchr5

137708363

+
intron-intronENST00000509934ENST00000508386PRLRchr5

35230370

-KDM3Bchr5

137708363

+

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FusionProtFeatures for PRLR_KDM3B


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PRLR

P16471

KDM3B

Q7LBC6

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code.Demethylation of Lys residue generates formaldehyde and succinate.May have tumor suppressor activity. {ECO:0000269|PubMed:16603237}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PRLR_KDM3B


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PRLR_KDM3B


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PRLRPPIA, SOCS3, TEC, VAV1, SOCS2, JAK2, PTPN11, GTF3A, FBXW11, CREBBP, PRLR, STAT5B, BTRCKDM3BUSP18, ELAVL1, HIST3H3, CREBBP, VCP, ZNF512B, SPAG8, NCS1, SRP68, WWOX, MOV10, RFPL4B, SMYD3, NTRK1, KRAS, XPO1, AK1, MYH9, CHMP4B, DEPDC1, LMNB2, TH, MRPL38, TRIM11, ALOX5, PLOD1, SERPINB2, CPN1, UBC, RNF41


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PRLR_KDM3B


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgenePRLRP16471DB01185FluoxymesteroneProlactin receptorsmall moleculeapproved|illicit
HgenePRLRP16471DB00052SomatotropinProlactin receptorbiotechapproved|investigational

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RelatedDiseases for PRLR_KDM3B


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePRLRC0024667Animal Mammary Neoplasms2CTD_human
HgenePRLRC0000786Spontaneous abortion1CTD_human
HgenePRLRC0004352Autistic Disorder1CTD_human
HgenePRLRC0014175Endometriosis1CTD_human
HgenePRLRC0020514Hyperprolactinemia1HPO;ORPHANET;UNIPROT
HgenePRLRC0023893Liver Cirrhosis, Experimental1CTD_human
HgenePRLRC0024668Mammary Neoplasms, Experimental1CTD_human
HgenePRLRC3809918MULTIPLE FIBROADENOMAS OF THE BREAST1ORPHANET;UNIPROT
TgeneKDM3BC0274869Toxic effect of heavy metal1CTD_human