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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 28532

FusionGeneSummary for PPP6R3_ACER3

check button Fusion gene summary
Fusion gene informationFusion gene name: PPP6R3_ACER3
Fusion gene ID: 28532
HgeneTgene
Gene symbol

PPP6R3

ACER3

Gene ID

55291

55331

Gene nameprotein phosphatase 6 regulatory subunit 3alkaline ceramidase 3
SynonymsC11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3APHC|PHCA|PLDECO
Cytomap

11q13.2

11q13.5

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein phosphatase 6 regulatory subunit 3SAPS domain family, member 3sporulation-induced transcript 4-associated protein SAPLalkaline ceramidase 3alkCDase 3alkaline CDase 3alkaline dihydroceramidase SB89alkaline phytoceramidasephytoceramidase, alkaline
Modification date2018052020180519
UniProtAcc

Q5H9R7

Q9NUN7

Ensembl transtripts involved in fusion geneENST00000393799, ENST00000530427, 
ENST00000393800, ENST00000534534, 
ENST00000524845, ENST00000265637, 
ENST00000524904, ENST00000393801, 
ENST00000265636, ENST00000529710, 
ENST00000527403, 
ENST00000532485, 
ENST00000530182, ENST00000526597, 
ENST00000533873, ENST00000538157, 
ENST00000544113, 
Fusion gene scores* DoF score18 X 11 X 10=19807 X 5 X 4=140
# samples 287
** MAII scorelog2(28/1980*10)=-2.82200169802201
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/140*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PPP6R3 [Title/Abstract] AND ACER3 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePPP6R3

GO:0043666

regulation of phosphoprotein phosphatase activity

16716191

TgeneACER3

GO:0046512

sphingosine biosynthetic process

20068046

TgeneACER3

GO:0071602

phytosphingosine biosynthetic process

11356846|20068046


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSKCMTCGA-YG-AA3P-06APPP6R3chr11

68305359

+ACER3chr11

76687333

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000393799ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000393799ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393799ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393799ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393799ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000393799ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-3CDSENST00000530427ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-3UTRENST00000530427ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-5UTRENST00000530427ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-5UTRENST00000530427ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-5UTRENST00000530427ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-intronENST00000530427ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000393800ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000393800ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393800ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393800ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393800ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000393800ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-3CDSENST00000534534ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-3UTRENST00000534534ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-5UTRENST00000534534ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-5UTRENST00000534534ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-5UTRENST00000534534ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
intron-intronENST00000534534ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000524845ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000524845ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000524845ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000524845ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000524845ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000524845ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000265637ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000265637ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000265637ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000265637ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000265637ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000265637ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000524904ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000524904ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000524904ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000524904ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000524904ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000524904ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000393801ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000393801ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393801ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393801ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000393801ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000393801ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000265636ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000265636ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000265636ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000265636ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000265636ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000265636ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000529710ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000529710ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000529710ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000529710ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000529710ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000529710ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+
Frame-shitENST00000527403ENST00000532485PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-3UTRENST00000527403ENST00000530182PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000527403ENST00000526597PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000527403ENST00000533873PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-5UTRENST00000527403ENST00000538157PPP6R3chr11

68305359

+ACER3chr11

76687333

+
5CDS-intronENST00000527403ENST00000544113PPP6R3chr11

68305359

+ACER3chr11

76687333

+

Top

FusionProtFeatures for PPP6R3_ACER3


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PPP6R3

Q5H9R7

ACER3

Q9NUN7

Hydrolyzes only phytoceramide into phytosphingosine andfree fatty acid. Does not have reverse activity.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PPP6R3_ACER3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PPP6R3_ACER3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PPP6R3KDM6A, TNFAIP3, USP21, USP36, USP49, PPP6C, PRKDC, HDAC1, HDAC2, ELAVL1, SIRT7, TERF2IP, TINF2, TFAP4, GRK5, PFAS, BRCA1, ECT2, NOTCH1, LATS1, GPSM1, HDAC11, USP10, ANKRD28, MOB1A, MOB1B, ACAD11, ANKRD44, ANKRD52, AP1B1, AP2A1, AP2A2, AURKA, DNAJC11, ECH1, ERLIN2, PPP6R1, PPP6R2, CDC37, ENAH, ETFA, HSP90AA1, HSP90AB1, RUVBL2, SRRT, TPM1, USP7, CSNK1E, SNAI2, RNF2, GPHA2, RPS6KB2, UNK, DIEXF, NSUN5, EIF4A3, TIPRL, NTRK1, CEP44, CEP19, XPO1, ZNRF2, ZNF746, TRMT2A, TRIM25, TESACER3ELAVL1, MLH1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for PPP6R3_ACER3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for PPP6R3_ACER3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneACER3C0025202melanoma1CTD_human