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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 28505

FusionGeneSummary for PPP4R2_FOXP1

check button Fusion gene summary
Fusion gene informationFusion gene name: PPP4R2_FOXP1
Fusion gene ID: 28505
HgeneTgene
Gene symbol

PPP4R2

FOXP1

Gene ID

151987

27086

Gene nameprotein phosphatase 4 regulatory subunit 2forkhead box P1
SynonymsPP4R212CC4|HSPC215|MFH|QRF1|hFKH1B
Cytomap

3p13

3p13

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein phosphatase 4 regulatory subunit 2forkhead box protein P1fork head-related protein like Bglutamine-rich factor 1mac-1-regulated forkhead
Modification date2018052320180522
UniProtAcc

Q9NY27

Q9H334

Ensembl transtripts involved in fusion geneENST00000356692, ENST00000295862, 
ENST00000394284, ENST00000495566, 
ENST00000318789, ENST00000475937, 
ENST00000493089, ENST00000484350, 
ENST00000318779, ENST00000491238, 
ENST00000498215, ENST00000468577, 
ENST00000472382, 
Fusion gene scores* DoF score5 X 2 X 5=5037 X 16 X 17=10064
# samples 540
** MAII scorelog2(5/50*10)=0log2(40/10064*10)=-4.65306001710456
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PPP4R2 [Title/Abstract] AND FOXP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneFOXP1

GO:0002903

negative regulation of B cell apoptotic process

25267198

TgeneFOXP1

GO:0030316

osteoclast differentiation

18799727

TgeneFOXP1

GO:0032496

response to lipopolysaccharide

18799727

TgeneFOXP1

GO:0032680

regulation of tumor necrosis factor production

18799727

TgeneFOXP1

GO:0035926

chemokine (C-C motif) ligand 2 secretion

18799727

TgeneFOXP1

GO:0036035

osteoclast development

18799727

TgeneFOXP1

GO:0042116

macrophage activation

18799727

TgeneFOXP1

GO:0042117

monocyte activation

18799727

TgeneFOXP1

GO:0045655

regulation of monocyte differentiation

15286807

TgeneFOXP1

GO:0045892

negative regulation of transcription, DNA-templated

20950788

TgeneFOXP1

GO:0050706

regulation of interleukin-1 beta secretion

18799727

TgeneFOXP1

GO:0050727

regulation of inflammatory response

18799727

TgeneFOXP1

GO:0060766

negative regulation of androgen receptor signaling pathway

18640093

TgeneFOXP1

GO:1900424

regulation of defense response to bacterium

18799727

TgeneFOXP1

GO:1901256

regulation of macrophage colony-stimulating factor production

18799727

TgeneFOXP1

GO:2001182

regulation of interleukin-12 secretion

18799727


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-AN-A0XT-01APPP4R2chr3

73047309

+FOXP1chr3

71161788

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000356692ENST00000318789PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000356692ENST00000475937PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000356692ENST00000493089PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000356692ENST00000484350PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000356692ENST00000318779PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000356692ENST00000491238PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000356692ENST00000498215PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000356692ENST00000468577PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000356692ENST00000472382PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-3CDSENST00000295862ENST00000318789PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-3CDSENST00000295862ENST00000475937PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-3CDSENST00000295862ENST00000493089PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-3CDSENST00000295862ENST00000484350PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-intronENST00000295862ENST00000318779PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-intronENST00000295862ENST00000491238PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-intronENST00000295862ENST00000498215PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-intronENST00000295862ENST00000468577PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5UTR-intronENST00000295862ENST00000472382PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000394284ENST00000318789PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000394284ENST00000475937PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000394284ENST00000493089PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000394284ENST00000484350PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000394284ENST00000318779PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000394284ENST00000491238PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000394284ENST00000498215PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000394284ENST00000468577PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000394284ENST00000472382PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000495566ENST00000318789PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000495566ENST00000475937PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000495566ENST00000493089PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
Frame-shitENST00000495566ENST00000484350PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000495566ENST00000318779PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000495566ENST00000491238PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000495566ENST00000498215PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000495566ENST00000468577PPP4R2chr3

73047309

+FOXP1chr3

71161788

-
5CDS-intronENST00000495566ENST00000472382PPP4R2chr3

73047309

+FOXP1chr3

71161788

-

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FusionProtFeatures for PPP4R2_FOXP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PPP4R2

Q9NY27

FOXP1

Q9H334

Regulatory subunit of serine/threonine-proteinphosphatase 4 (PP4). May regulate the activity of PPP4C atcentrosomal microtubule organizing centers. Its interaction withthe SMN complex leads to enhance the temporal localization ofsnRNPs, suggesting a role of PPP4C in maturation of spliceosomalsnRNPs. The PPP4C-PPP4R2-PPP4R3A PP4 complex specificallydephosphorylates H2AFX phosphorylated on 'Ser-140' (gamma-H2AFX)generated during DNA replication and required for DNA doublestrand break repair. Mediates RPA2 dephosphorylation by recruitingPPP4C to RPA2 in a DNA damage-dependent manner. RPA2dephosphorylation is required for the efficient RPA2-mediatedrecruitment of RAD51 to chromatin following double strand breaks,an essential step for DNA repair. {ECO:0000269|PubMed:10769191,ECO:0000269|PubMed:12668731, ECO:0000269|PubMed:18614045,ECO:0000269|PubMed:20154705}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PPP4R2_FOXP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PPP4R2_FOXP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PPP4R2PPP4C, DDX20, GEMIN4, SMEK1, SMEK2, TIPRL, SRRM2, CLNS1A, IGBP1, NUBP2, TRA2B, DSTN, PLIN3, TPM1, CCT3, PAAF1, AMPD2, CCDC6, INPPL1, LRRC47, PSMA1, SF3A1, VASP, TSSC4, COMTD1, PPP2R4, LCMT1, PPME1, CUTA, DNAJA1, WDR55, SLC4A1AP, TRAPPC13, ELMSAN1, FAM133B, NPHP4, CT45A1, UBXN10, RNGTT, DHX38, CRAMP1L, ZNF785, USP10, FAM19A3, MARCKSL1, UXS1, USP15, SPAG9, MCM2, MCM4, MCM6, TRIM25FOXP1CTBP1, FOXP1, FOXP2, FOXP4, GATAD2B, MTA1, NCOR2, ELAVL1, MYC, IL3RA, CCDC183, UNK, RCC1, HOXD13, QSER1, SATB1, SATB2, CTBP2, MYH10, LIG3, C10orf2, CUX1, VRK3, XRCC1, CHD1L, RPA2, BLM, MRE11A, MYL12B, TBP, TP53, TTF2, ZBTB10, MYL9, RPA3, TFCP2, TOP2A, UBP1, FOXP3, AURKA, SNRNP70


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PPP4R2_FOXP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PPP4R2_FOXP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneFOXP1C0024232Lymphatic Metastasis1CTD_human
TgeneFOXP1C0027626Neoplasm Invasiveness1CTD_human
TgeneFOXP1C0030297Pancreatic Neoplasm1CTD_human
TgeneFOXP1C0042900Vitiligo1CTD_human
TgeneFOXP1C0279628Adenocarcinoma Of Esophagus1CTD_human
TgeneFOXP1C1510586Autism Spectrum Disorders1CTD_human
TgeneFOXP1C3495559Juvenile arthritis1CTD_human
TgeneFOXP1C4013764MENTAL RETARDATION WITH LANGUAGE IMPAIRMENT AND WITH OR WITHOUT AUTISTIC FEATURES1CTD_human;ORPHANET;UNIPROT