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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 28470

FusionGeneSummary for PPP3CA_DDX42

check button Fusion gene summary
Fusion gene informationFusion gene name: PPP3CA_DDX42
Fusion gene ID: 28470
HgeneTgene
Gene symbol

PPP3CA

DDX42

Gene ID

5530

11325

Gene nameprotein phosphatase 3 catalytic subunit alphaDEAD-box helicase 42
SynonymsCALN|CALNA|CALNA1|CCN1|CNA1|IECEE|IECEE1|PPP2BDDX42P|RHELP|RNAHP|SF3B8|SF3b125
Cytomap

4q24

17q23.3

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein phosphatase 2B catalytic subunit alpha isoformCAM-PRP catalytic subunitcalcineurin A alphacalmodulin-dependent calcineurin A subunit alpha isoformprotein phosphatase 2B, catalytic subunit, alpha isoformprotein phosphatase 3 (ATP-dependent RNA helicase DDX42DEAD (Asp-Glu-Ala-Asp) box helicase 42DEAD (Asp-Glu-Ala-Asp) box polypeptide 42SF3b DEAD box proteinsplicing factor 3B-associated 125 kDa proteinsplicing factor 3b, subunit 8
Modification date2018052320180519
UniProtAcc

Q08209

Q86XP3

Ensembl transtripts involved in fusion geneENST00000512215, ENST00000394854, 
ENST00000323055, ENST00000394853, 
ENST00000507176, ENST00000523694, 
ENST00000510292, 
ENST00000578681, 
ENST00000583590, ENST00000359353, 
ENST00000389924, ENST00000457800, 
ENST00000582985, 
Fusion gene scores* DoF score11 X 7 X 5=3857 X 7 X 4=196
# samples 97
** MAII scorelog2(9/385*10)=-2.09686153925259
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/196*10)=-1.48542682717024
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PPP3CA [Title/Abstract] AND DDX42 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePPP3CA

GO:0006470

protein dephosphorylation

18815128|19154138

HgenePPP3CA

GO:0033173

calcineurin-NFAT signaling cascade

19154138|22688515

HgenePPP3CA

GO:0035690

cellular response to drug

11005320

HgenePPP3CA

GO:0045944

positive regulation of transcription by RNA polymerase II

22688515

HgenePPP3CA

GO:0051592

response to calcium ion

18815128

TgeneDDX42

GO:0008104

protein localization

19377511


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AW800680PPP3CAchr4

102096367

+DDX42chr17

61896513

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3UTRENST00000512215ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000512215ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000512215ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000512215ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000512215ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000512215ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394854ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394854ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000394854ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394854ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394854ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000394854ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000323055ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000323055ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000323055ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000323055ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000323055ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000323055ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394853ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394853ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000394853ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394853ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000394853ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000394853ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000507176ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000507176ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000507176ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000507176ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000507176ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000507176ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000523694ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000523694ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000523694ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000523694ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000523694ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000523694ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000510292ENST00000578681PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000510292ENST00000583590PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000510292ENST00000359353PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000510292ENST00000389924PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-3UTRENST00000510292ENST00000457800PPP3CAchr4

102096367

+DDX42chr17

61896513

-
intron-intronENST00000510292ENST00000582985PPP3CAchr4

102096367

+DDX42chr17

61896513

-

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FusionProtFeatures for PPP3CA_DDX42


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PPP3CA

Q08209

DDX42

Q86XP3

Calcium-dependent, calmodulin-stimulated proteinphosphatase which plays an essential role in the transduction ofintracellular Ca(2+)-mediated signals (PubMed:15671020,PubMed:18838687, PubMed:19154138, PubMed:23468591). Many of thesubstrates contain a PxIxIT motif and/or a LxVP motif(PubMed:17498738, PubMed:17502104, PubMed:23468591,PubMed:27974827, PubMed:22343722). In response to increased Ca(2+)levels, dephosphorylates and activates phosphatase SSH1 whichresults in cofilin dephosphorylation (PubMed:15671020). Inresponse to increased Ca(2+) levels following mitochondrialdepolarization, dephosphorylates DNM1L inducing DNM1Ltranslocation to the mitochondrion (PubMed:18838687).Dephosphorylates heat shock protein HSPB1 (By similarity).Dephosphorylates and activates transcription factor NFATC1(PubMed:19154138). In response to increased Ca(2+) levels,regulates NFAT-mediated transcription probably bydephosphorylating NFAT and promoting its nuclear translocation(PubMed:26248042). Dephosphorylates and inactivates transcriptionfactor ELK1 (PubMed:19154138). Dephosphorylates DARPP32(PubMed:19154138). {ECO:0000250|UniProtKB:P48452,ECO:0000269|PubMed:15671020, ECO:0000269|PubMed:17498738,ECO:0000269|PubMed:17502104, ECO:0000269|PubMed:18838687,ECO:0000269|PubMed:19154138, ECO:0000269|PubMed:22343722,ECO:0000269|PubMed:23468591, ECO:0000269|PubMed:26248042,ECO:0000269|PubMed:27974827}. ATP-dependent RNA helicase. Binds to partially double-stranded RNAs (dsRNAs) in order to unwind RNA secondarystructures. Unwinding is promoted in the presence of single-strandbinding proteins. Mediates also RNA duplex formation therebydisplacing the single-strand RNA binding protein. ATP and ADPmodulate its activity: ATP binding and hydrolysis by DDX42triggers RNA strand separation, whereas the ADP-bound form of theprotein triggers annealing of complementary RNA strands. Involvedin the survival of cells by interacting with TP53BP2 and therebycounteracting the apoptosis-stimulating activity of TP53BP2.Relocalizes TP53BP2 to the cytoplasm.{ECO:0000269|PubMed:16397294, ECO:0000269|PubMed:19377511}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PPP3CA_DDX42


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PPP3CA_DDX42


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PPP3CA_DDX42


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PPP3CA_DDX42


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePPP3CAC0019202Hepatolenticular Degeneration1CTD_human
HgenePPP3CAC0030305Pancreatitis1CTD_human
HgenePPP3CAC0033578Prostatic Neoplasms1CTD_human
HgenePPP3CAC0039584Testicular Diseases1CTD_human
HgenePPP3CAC0149721Left Ventricular Hypertrophy1CTD_human
HgenePPP3CAC0152013Adenocarcinoma of lung (disorder)1CTD_human