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Fusion gene ID: 28289 |
FusionGeneSummary for PPP1CC_KCNC2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PPP1CC_KCNC2 | Fusion gene ID: 28289 | Hgene | Tgene | Gene symbol | PPP1CC | KCNC2 | Gene ID | 5501 | 3747 |
| Gene name | protein phosphatase 1 catalytic subunit gamma | potassium voltage-gated channel subfamily C member 2 | |
| Synonyms | PP-1G|PP1C|PPP1G | KV3.2 | |
| Cytomap | 12q24.11 | 12q21.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | serine/threonine-protein phosphatase PP1-gamma catalytic subunitprotein phosphatase 1, catalytic subunit, gamma isoformprotein phosphatase 1, catalytic subunit, gamma isozymeprotein phosphatase 1C catalytic subunitserine/threonine phosphatase 1 gamma | potassium voltage-gated channel subfamily C member 2potassium channel, voltage gated Shaw related subfamily C, member 2potassium voltage-gated channel, Shaw-related subfamily, member 2shaw-like potassium channelvoltage-gated potassium channel Kv3.2 | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | P36873 | Q96PR1 | |
| Ensembl transtripts involved in fusion gene | ENST00000335007, ENST00000340766, ENST00000546933, ENST00000550991, ENST00000551676, ENST00000551690, | ENST00000550433, ENST00000548513, ENST00000549446, ENST00000298972, ENST00000341669, ENST00000350228, ENST00000540018, ENST00000393288, ENST00000548243, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 13 X 4 X 5=260 |
| # samples | 2 | 12 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(12/260*10)=-1.11547721741994 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: PPP1CC [Title/Abstract] AND KCNC2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SARC | TCGA-DX-A23Y-01A | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000335007 | ENST00000550433 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000335007 | ENST00000548513 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000335007 | ENST00000549446 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000335007 | ENST00000298972 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000335007 | ENST00000341669 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000335007 | ENST00000350228 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000335007 | ENST00000540018 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000335007 | ENST00000393288 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000335007 | ENST00000548243 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| In-frame | ENST00000340766 | ENST00000550433 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000340766 | ENST00000548513 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000340766 | ENST00000549446 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000340766 | ENST00000298972 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000340766 | ENST00000341669 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000340766 | ENST00000350228 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000340766 | ENST00000540018 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000340766 | ENST00000393288 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000340766 | ENST00000548243 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-3CDS | ENST00000546933 | ENST00000550433 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-3UTR | ENST00000546933 | ENST00000548513 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-3UTR | ENST00000546933 | ENST00000549446 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-3UTR | ENST00000546933 | ENST00000298972 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-3UTR | ENST00000546933 | ENST00000341669 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-3UTR | ENST00000546933 | ENST00000350228 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-intron | ENST00000546933 | ENST00000540018 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-intron | ENST00000546933 | ENST00000393288 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| intron-intron | ENST00000546933 | ENST00000548243 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| In-frame | ENST00000550991 | ENST00000550433 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000550991 | ENST00000548513 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000550991 | ENST00000549446 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000550991 | ENST00000298972 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000550991 | ENST00000341669 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000550991 | ENST00000350228 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000550991 | ENST00000540018 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000550991 | ENST00000393288 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000550991 | ENST00000548243 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| In-frame | ENST00000551676 | ENST00000550433 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000551676 | ENST00000548513 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000551676 | ENST00000549446 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000551676 | ENST00000298972 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000551676 | ENST00000341669 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-3UTR | ENST00000551676 | ENST00000350228 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000551676 | ENST00000540018 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000551676 | ENST00000393288 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5CDS-intron | ENST00000551676 | ENST00000548243 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-3CDS | ENST00000551690 | ENST00000550433 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-3UTR | ENST00000551690 | ENST00000548513 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-3UTR | ENST00000551690 | ENST00000549446 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-3UTR | ENST00000551690 | ENST00000298972 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-3UTR | ENST00000551690 | ENST00000341669 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-3UTR | ENST00000551690 | ENST00000350228 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-intron | ENST00000551690 | ENST00000540018 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-intron | ENST00000551690 | ENST00000393288 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
| 5UTR-intron | ENST00000551690 | ENST00000548243 | PPP1CC | chr12 | 111180458 | - | KCNC2 | chr12 | 75434986 | - |
Top |
FusionProtFeatures for PPP1CC_KCNC2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PPP1CC | KCNC2 |
| Protein phosphatase that associates with over 200regulatory proteins to form highly specific holoenzymes whichdephosphorylate hundreds of biological targets. Proteinphosphatase 1 (PP1) is essential for cell division, andparticipates in the regulation of glycogen metabolism, musclecontractility and protein synthesis. Dephosphorylates RPS6KB1.Involved in regulation of ionic conductances and long-termsynaptic plasticity. May play an important role indephosphorylating substrates such as the postsynaptic density-associated Ca(2+)/calmodulin dependent protein kinase II.Component of the PTW/PP1 phosphatase complex, which plays a rolein the control of chromatin structure and cell cycle progressionduring the transition from mitosis into interphase. In balancewith CSNK1D and CSNK1E, determines the circadian period length,through the regulation of the speed and rhythmicity of PER1 andPER2 phosphorylation. May dephosphorylate CSNK1D and CSNK1E.Dephosphorylates the 'Ser-418' residue of FOXP3 in regulatory T-cells (Treg) from patients with rheumatoid arthritis, therebyinactivating FOXP3 and rendering Treg cells functionally defective(PubMed:23396208). {ECO:0000269|PubMed:17936702,ECO:0000269|PubMed:20516061, ECO:0000269|PubMed:21712997,ECO:0000269|PubMed:23396208}. | Voltage-gated potassium channel that mediatestransmembrane potassium transport in excitable membranes,primarily in the brain. Contributes to the regulation of the fastaction potential repolarization and in sustained high-frequencyfiring in neurons of the central nervous system. Homotetramerchannels mediate delayed-rectifier voltage-dependent potassiumcurrents that activate rapidly at high-threshold voltages andinactivate slowly. Forms tetrameric channels through whichpotassium ions pass in accordance with their electrochemicalgradient. The channel alternates between opened and closedconformations in response to the voltage difference across themembrane (PubMed:15709110). Can form functional homotetrameric andheterotetrameric channels that contain variable proportions ofKCNC1, and possibly other family members as well; channelproperties depend on the type of alpha subunits that are part ofthe channel. Channel properties may be modulated either by theassociation with ancillary subunits, such as KCNE1, KCNE2 or KCNE3or indirectly by nitric oxide (NO) through a cGMP- and PKG-mediated signaling cascade, slowing channel activation anddeactivation of delayed rectifier potassium channels (Bysimilarity). Contributes to fire sustained trains of very briefaction potentials at high frequency in retinal ganglion cells,thalamocortical and suprachiasmatic nucleus (SCN) neurons and inhippocampal and neocortical interneurons (PubMed:15709110).Sustained maximal action potential firing frequency in inhibitoryhippocampal interneurons is negatively modulated by histamine H2receptor activation in a cAMP- and protein kinase (PKA)phosphorylation-dependent manner. Plays a role in maintaining thefidelity of synaptic transmission in neocortical GABAergicinterneurons by generating action potential (AP) repolarization atnerve terminals, thus reducing spike-evoked calcium influx andGABA neurotransmitter release. Required for long-rangesynchronization of gamma oscillations over distance in theneocortex. Contributes to the modulation of the circadian rhythmof spontaneous action potential firing in suprachiasmatic nucleus(SCN) neurons in a light-dependent manner (By similarity).{ECO:0000250|UniProtKB:P22462, ECO:0000250|UniProtKB:Q14B80,ECO:0000269|PubMed:15709110, ECO:0000305|PubMed:10414303,ECO:0000305|PubMed:11506885}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 56_99 | -83 | 619 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 56_99 | -91 | 584 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 56_99 | -227 | 639 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 437_442 | -83 | 619 | Region | Selectivity filter |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 437_442 | -91 | 584 | Region | Selectivity filter |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 437_442 | -227 | 639 | Region | Selectivity filter |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 1_229 | -83 | 619 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 304_313 | -83 | 619 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 369_381 | -83 | 619 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 474_638 | -83 | 619 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 1_229 | -91 | 584 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 304_313 | -91 | 584 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 369_381 | -91 | 584 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 474_638 | -91 | 584 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 1_229 | -227 | 639 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 304_313 | -227 | 639 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 369_381 | -227 | 639 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 474_638 | -227 | 639 | Topological domain | Cytoplasmic |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 230_250 | -83 | 619 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 284_303 | -83 | 619 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 314_334 | -83 | 619 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 346_368 | -83 | 619 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 382_402 | -83 | 619 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000393288 | - | 0 | 5 | 453_473 | -83 | 619 | Transmembrane | Helical%3B Name%3DSegment S6 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 230_250 | -91 | 584 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 284_303 | -91 | 584 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 314_334 | -91 | 584 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 346_368 | -91 | 584 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 382_402 | -91 | 584 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000540018 | - | 0 | 4 | 453_473 | -91 | 584 | Transmembrane | Helical%3B Name%3DSegment S6 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 230_250 | -227 | 639 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 284_303 | -227 | 639 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 314_334 | -227 | 639 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 346_368 | -227 | 639 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 382_402 | -227 | 639 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | >KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000549446 | - | 0 | 5 | 453_473 | -227 | 639 | Transmembrane | Helical%3B Name%3DSegment S6 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 56_99 | 625 | 599 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 56_99 | 593 | 630 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 56_99 | 570 | 543 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 56_99 | 625 | 477 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 56_99 | 593 | 630 | Compositional bias | Note=Gly/Pro-rich (insert) |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 437_442 | 625 | 599 | Region | Selectivity filter |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 437_442 | 593 | 630 | Region | Selectivity filter |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 437_442 | 570 | 543 | Region | Selectivity filter |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 437_442 | 625 | 477 | Region | Selectivity filter |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 437_442 | 593 | 630 | Region | Selectivity filter |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 1_229 | 625 | 599 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 304_313 | 625 | 599 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 369_381 | 625 | 599 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 474_638 | 625 | 599 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 1_229 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 304_313 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 369_381 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 474_638 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 1_229 | 570 | 543 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 304_313 | 570 | 543 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 369_381 | 570 | 543 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 474_638 | 570 | 543 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 1_229 | 625 | 477 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 304_313 | 625 | 477 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 369_381 | 625 | 477 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 474_638 | 625 | 477 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 1_229 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 304_313 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 369_381 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 474_638 | 593 | 630 | Topological domain | Cytoplasmic |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 230_250 | 625 | 599 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 284_303 | 625 | 599 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 314_334 | 625 | 599 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 346_368 | 625 | 599 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 382_402 | 625 | 599 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000298972 | - | 4 | 6 | 453_473 | 625 | 599 | Transmembrane | Helical%3B Name%3DSegment S6 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 230_250 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 284_303 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 314_334 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 346_368 | 593 | 630 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 382_402 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000341669 | - | 3 | 5 | 453_473 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S6 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 230_250 | 570 | 543 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 284_303 | 570 | 543 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 314_334 | 570 | 543 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 346_368 | 570 | 543 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 382_402 | 570 | 543 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000350228 | - | 3 | 5 | 453_473 | 570 | 543 | Transmembrane | Helical%3B Name%3DSegment S6 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 230_250 | 625 | 477 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 284_303 | 625 | 477 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 314_334 | 625 | 477 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 346_368 | 625 | 477 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 382_402 | 625 | 477 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000548513 | - | 3 | 5 | 453_473 | 625 | 477 | Transmembrane | Helical%3B Name%3DSegment S6 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 230_250 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S1 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 284_303 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S2 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 314_334 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S3 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 346_368 | 593 | 630 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 382_402 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S5 |
| Tgene | KCNC2 | chr12:111180458 | chr12:75434986 | ENST00000550433 | - | 2 | 4 | 453_473 | 593 | 630 | Transmembrane | Helical%3B Name%3DSegment S6 |
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FusionGeneSequence for PPP1CC_KCNC2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_PPP1CC_ENST00000335007_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_55aa >In-frame_PPP1CC_ENST00000340766_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_55aa >In-frame_PPP1CC_ENST00000550991_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_55aa >In-frame_PPP1CC_ENST00000551676_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_55aa |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_PPP1CC_ENST00000335007_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_165nt ATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCT >In-frame_PPP1CC_ENST00000340766_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_165nt ATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCT >In-frame_PPP1CC_ENST00000550991_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_165nt ATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCT >In-frame_PPP1CC_ENST00000551676_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_165nt ATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCT |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_PPP1CC_ENST00000335007_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_1376nt TTTTGTTCTTCTCGTGGTTCCAGTGGGGAGAGAAGGAGGAAGTAGGGAGCGGGGTGGCAGGGGGGGGACCCGCCGCGGCTGCTGCCACCG CCGCCACCACCGCCTCTGCTCGTGGCGTGGGAAAGGAGGTGTGAGTCCCGGGCGCGAGCCGGCGGCGGCGCCGCTGCGGGAGGGTCGGCG GTGGGAAGGCGATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGAT TATTGACTGCTGAGAAAGGGACAGTGGAATTTAGCCATACCAAGGACTATACTGGAAACAGACTTCTGCTGCTGAATGTGCCCTGATGTG ACCAGGTTGCACTTGGAAGAGATCCTCGCGTCTTCATGAGGCACTTAAAGCTTATAAAAGAACTGCGGCTGGAACTCATCTGGTGCTCCC CATGAGAGTGCTCTGCTTGTAGACTGGCCAGTGTCCATGAAACAACTGTAAATACCAACATGTGTGCATGGGTCAACAGTCTTGGCCATT TCTCATCAAAAGAAGCCAAATTCATGATCAACATCTCTGAAGTTTCAAGTAAGGCCCACACTTCTTTGAATTACTCTTCATGGGCCCACA TTAGGTTGTGCTGTGAATTACTTAAGGCAGTGATACTGATGTAGTATAGTTTTGTCTTAATTTCCCTTATTTCTACTTCTTTGGTTGAAT CTATGAACTTGATTGTATAATTTTCTTATAAATTACTGATGTAATCAGCTTGTCAATTATGTTGTGAAATTGTTAGTATTCATTTATCAA AAATGACCTATGTTTAGTCACATATTTGTTTAGTTCTGGGAAATTGTTATAGCTTAAATGGAACTCACCAACATTATTCATAGTTTAAGT CTTTTATCATTATTACCTCAATTATAAATATTACAAAAACATAATTCTGGCAATGAGAGTATTTTTTTATTCAATGATCAAGGAGCAATG TCAGTATATAGTAGAATATCAATTAAATTATATCCTAAAATGTATATTTTGCATAAAAGAGATATTCTTTAATCAATTACTTTTTTGTGA GTTTTGTGGCAAATGAAGCTTGTACGTGTCTTTAAAACTGTTGTAGATGAAACTGTATAAGATTTTTACATCTTGCTTAATCAATATTTT CAGAGTCTATTAGTTCCCCTGGGATTCTGAATATAACATATAGCCTATTATAAATCCCTGTATCGTGGACCTTTTGTGAACATTTCAAGG CGCATGCACAACCTTGATGATAACCAGTGGAAATGTAACTAACTGAAATGAAGAATAAAAGGCAAATGAGCTGGGGATAAACTTGAATGT >In-frame_PPP1CC_ENST00000340766_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_1417nt ATCCGTGCGCCGCCCGAGGCTGTCTAAGGAGTCGGCGGCCATTTTGTTCTTCTCGTGGTTCCAGTGGGGAGAGAAGGAGGAAGTAGGGAG CGGGGTGGCAGGGGGGGGACCCGCCGCGGCTGCTGCCACCGCCGCCACCACCGCCTCTGCTCGTGGCGTGGGAAAGGAGGTGTGAGTCCC GGGCGCGAGCCGGCGGCGGCGCCGCTGCGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATTTAGATAAACTCAACATCGACAGCATTAT CCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCTGAGAAAGGGACAGTGGAATTTAGCCATACCAAGGACTA TACTGGAAACAGACTTCTGCTGCTGAATGTGCCCTGATGTGACCAGGTTGCACTTGGAAGAGATCCTCGCGTCTTCATGAGGCACTTAAA GCTTATAAAAGAACTGCGGCTGGAACTCATCTGGTGCTCCCCATGAGAGTGCTCTGCTTGTAGACTGGCCAGTGTCCATGAAACAACTGT AAATACCAACATGTGTGCATGGGTCAACAGTCTTGGCCATTTCTCATCAAAAGAAGCCAAATTCATGATCAACATCTCTGAAGTTTCAAG TAAGGCCCACACTTCTTTGAATTACTCTTCATGGGCCCACATTAGGTTGTGCTGTGAATTACTTAAGGCAGTGATACTGATGTAGTATAG TTTTGTCTTAATTTCCCTTATTTCTACTTCTTTGGTTGAATCTATGAACTTGATTGTATAATTTTCTTATAAATTACTGATGTAATCAGC TTGTCAATTATGTTGTGAAATTGTTAGTATTCATTTATCAAAAATGACCTATGTTTAGTCACATATTTGTTTAGTTCTGGGAAATTGTTA TAGCTTAAATGGAACTCACCAACATTATTCATAGTTTAAGTCTTTTATCATTATTACCTCAATTATAAATATTACAAAAACATAATTCTG GCAATGAGAGTATTTTTTTATTCAATGATCAAGGAGCAATGTCAGTATATAGTAGAATATCAATTAAATTATATCCTAAAATGTATATTT TGCATAAAAGAGATATTCTTTAATCAATTACTTTTTTGTGAGTTTTGTGGCAAATGAAGCTTGTACGTGTCTTTAAAACTGTTGTAGATG AAACTGTATAAGATTTTTACATCTTGCTTAATCAATATTTTCAGAGTCTATTAGTTCCCCTGGGATTCTGAATATAACATATAGCCTATT ATAAATCCCTGTATCGTGGACCTTTTGTGAACATTTCAAGGCGCATGCACAACCTTGATGATAACCAGTGGAAATGTAACTAACTGAAAT >In-frame_PPP1CC_ENST00000550991_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_1351nt GGGAGAGAAGGAGGAAGTAGGGAGCGGGGTGGCAGGGGGGGGACCCGCCGCGGCTGCTGCCACCGCCGCCACCACCGCCTCTGCTCGTGG CGTGGGAAAGGAGGTGTGAGTCCCGGGCGCGAGCCGGCGGCGGCGCCGCTGCGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATTTAGA TAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCTGAGAAAGGGACAGT GGAATTTAGCCATACCAAGGACTATACTGGAAACAGACTTCTGCTGCTGAATGTGCCCTGATGTGACCAGGTTGCACTTGGAAGAGATCC TCGCGTCTTCATGAGGCACTTAAAGCTTATAAAAGAACTGCGGCTGGAACTCATCTGGTGCTCCCCATGAGAGTGCTCTGCTTGTAGACT GGCCAGTGTCCATGAAACAACTGTAAATACCAACATGTGTGCATGGGTCAACAGTCTTGGCCATTTCTCATCAAAAGAAGCCAAATTCAT GATCAACATCTCTGAAGTTTCAAGTAAGGCCCACACTTCTTTGAATTACTCTTCATGGGCCCACATTAGGTTGTGCTGTGAATTACTTAA GGCAGTGATACTGATGTAGTATAGTTTTGTCTTAATTTCCCTTATTTCTACTTCTTTGGTTGAATCTATGAACTTGATTGTATAATTTTC TTATAAATTACTGATGTAATCAGCTTGTCAATTATGTTGTGAAATTGTTAGTATTCATTTATCAAAAATGACCTATGTTTAGTCACATAT TTGTTTAGTTCTGGGAAATTGTTATAGCTTAAATGGAACTCACCAACATTATTCATAGTTTAAGTCTTTTATCATTATTACCTCAATTAT AAATATTACAAAAACATAATTCTGGCAATGAGAGTATTTTTTTATTCAATGATCAAGGAGCAATGTCAGTATATAGTAGAATATCAATTA AATTATATCCTAAAATGTATATTTTGCATAAAAGAGATATTCTTTAATCAATTACTTTTTTGTGAGTTTTGTGGCAAATGAAGCTTGTAC GTGTCTTTAAAACTGTTGTAGATGAAACTGTATAAGATTTTTACATCTTGCTTAATCAATATTTTCAGAGTCTATTAGTTCCCCTGGGAT TCTGAATATAACATATAGCCTATTATAAATCCCTGTATCGTGGACCTTTTGTGAACATTTCAAGGCGCATGCACAACCTTGATGATAACC AGTGGAAATGTAACTAACTGAAATGAAGAATAAAAGGCAAATGAGCTGGGGATAAACTTGAATGTTATCTGATTAAATTACTCAAATTAT >In-frame_PPP1CC_ENST00000551676_chr12_111180458_-_KCNC2_ENST00000550433_chr12_75434986_-_1317nt GGGGGGGGACCCGCCGCGGCTGCTGCCACCGCCGCCACCACCGCCTCTGCTCGTGGCGTGGGAAAGGAGGTGTGAGTCCCGGGCGCGAGC CGGCGGCGGCGCCGCTGCGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTG CTGGAAGTGTTGTACAGAATTTATCATGGATTATTGACTGCTGAGAAAGGGACAGTGGAATTTAGCCATACCAAGGACTATACTGGAAAC AGACTTCTGCTGCTGAATGTGCCCTGATGTGACCAGGTTGCACTTGGAAGAGATCCTCGCGTCTTCATGAGGCACTTAAAGCTTATAAAA GAACTGCGGCTGGAACTCATCTGGTGCTCCCCATGAGAGTGCTCTGCTTGTAGACTGGCCAGTGTCCATGAAACAACTGTAAATACCAAC ATGTGTGCATGGGTCAACAGTCTTGGCCATTTCTCATCAAAAGAAGCCAAATTCATGATCAACATCTCTGAAGTTTCAAGTAAGGCCCAC ACTTCTTTGAATTACTCTTCATGGGCCCACATTAGGTTGTGCTGTGAATTACTTAAGGCAGTGATACTGATGTAGTATAGTTTTGTCTTA ATTTCCCTTATTTCTACTTCTTTGGTTGAATCTATGAACTTGATTGTATAATTTTCTTATAAATTACTGATGTAATCAGCTTGTCAATTA TGTTGTGAAATTGTTAGTATTCATTTATCAAAAATGACCTATGTTTAGTCACATATTTGTTTAGTTCTGGGAAATTGTTATAGCTTAAAT GGAACTCACCAACATTATTCATAGTTTAAGTCTTTTATCATTATTACCTCAATTATAAATATTACAAAAACATAATTCTGGCAATGAGAG TATTTTTTTATTCAATGATCAAGGAGCAATGTCAGTATATAGTAGAATATCAATTAAATTATATCCTAAAATGTATATTTTGCATAAAAG AGATATTCTTTAATCAATTACTTTTTTGTGAGTTTTGTGGCAAATGAAGCTTGTACGTGTCTTTAAAACTGTTGTAGATGAAACTGTATA AGATTTTTACATCTTGCTTAATCAATATTTTCAGAGTCTATTAGTTCCCCTGGGATTCTGAATATAACATATAGCCTATTATAAATCCCT GTATCGTGGACCTTTTGTGAACATTTCAAGGCGCATGCACAACCTTGATGATAACCAGTGGAAATGTAACTAACTGAAATGAAGAATAAA |
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FusionGenePPI for PPP1CC_KCNC2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PPP1CC | AKAP11, PPP1R15A, SMARCB1, PPP1R9B, RYR2, TLX1, PPP1R3D, PPP1R8, HDAC8, HDAC1, HDAC6, HDAC10, NCOR1, TRIM28, WDR82, TOX4, PPP1R10, VDR, MAPK1, EIF2AK2, NONO, LEO1, ELAVL1, SIRT7, PDE6B, VCP, LMNA, HSPA5, HSPA8, ENO2, ACTB, SIAH2, NEFL, PPP1R1B, CKB, ATM, BCL2, EIF2A, LBR, CDKN2A, BCL2L1, CDC34, CDK1, CDK2, CCNB1, CCND1, CCND3, HSPA4, MAX, SKP1, PCNA, ESR1, TP53, AKT1, BIRC5, CUL1, COPS5, ITSN2, TLX3, FBXO6, AURKA, PPP1R2, APP, PAXIP1, BMPR2, GOLGA7, IL3RA, RANBP9, AATK, ACAD8, ABT1, B4GAT1, BTBD10, C15orf59, C1QA, CLMN, CLTC, CNST, CSRNP1, DEAF1, ELP4, FTL, FXYD6, HMGN1, KCTD20, KIAA1377, LMTK2, NAPEPLD, NEK2, NUAK1, PHACTR4, PHC1, PIAS1, PPP1R13B, PPP1R15B, PPP1R16A, PPP1R18, PPP1R3C, PRR16, RIF1, RPL7, RPRD2, RRP1B, SH3RF2, SHANK3, STAM, STAU1, TACC2, TEFM, TOR1AIP1, TP53BP2, TPRN, WBP11, YLPM1, ZDBF2, ZNF318, ZNF667, MDM4, RAF1, ANKRD42, APIP, ASH2L, CTSL, CYFIP1, DACT1, DYRK4, GLB1L, GSTZ1, CSNK1A1, JAK2, KDM4D, MAP4K4, NMT2, NRBP1, RRM1, SGCE, SMG6, TCTEX1D4, TMEM120A, TOPBP1, TRA2A, TWISTNB, TEX36, VSTM4, PPP1R32, C11orf74, ENKD1, SPATC1L, PPP1R35, C9orf50, ZNF24, KRCC1, TNS1, RNF19B, SDR39U1, SPOCD1, STARD9, TBC1D19, HSPA2, TUBB, ATP5B, ACTG1, CCT2, GSTM5, SFRP1, GRB2, ZFYVE9, URI1, LATS1, NPM1, SP3, GBP1, RPL10AP3, SNRPD2, IKBKG, TRAF3, TRAF6, RPA3, RPA2, RPA1, FAM96B, CD2BP2, CSRNP2, ABCE1, CSNK1E, CSNK2B, DEC1, FBXW11, RORC, CLOCK, PPP1R3B, PPP1R7, PIH1D1, PMF1, WDR92, PPP1R13L, CASC5, MKI67, POLR3A, PPP1R9A, GYS1, RPAP3, SCRIB, LRRC1, PLCL2, KIAA1279, POLR3E, DSN1, PEAK1, ZFYVE16, ERBB2IP, EIF2AK4, PDRG1, SHOC2, NUP153, PPP1CA, CDCA2, KIF18A, TANC2, RPAP2, SNCAIP, NDC80, CCDC85C, NUF2, RASSF8, LENG8, PPP1R11, CCDC85B, C20orf27, POLR3B, UXT, PPP1R3F, RASSF7, RASSF9, PPP1CB, DPYSL2, PPP1R2P3, AP2A1, CALML3, CAPZB, CLIC1, CPM, DDX3X, FLII, HNRNPA2B1, HNRNPH3, ILF3, MYO1B, PFDN2, DBN1, FLNA, MYH9, RPL10, IQGAP1, SYNPO, LIMA1, MYO19, SVIL, TPM3, TPM4, APOBEC3B, SAFB2, CORO1C, RAI14, RBMX, ZNF638, PNMA3, PPHLN1, NCOA5, INF2, ZNF326, RBM12B, RBMXL1, UBXN2B, GSK3A, GSK3B, HSD17B3, PFDN6, POLR2E, PQBP1, PSME1, RPL13, PPP1R16B, C19orf26, ZWINT, SH2D4A, SFRP2, SFRP5, PPP2R5C, FOXA1, TRIM25 | KCNC2 | KCNC1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PPP1CC_KCNC2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | KCNC2 | Q96PR1 | DB06637 | Dalfampridine | Potassium voltage-gated channel subfamily C member 2 {ECO:0000312|HGNC:HGNC:6234} | small molecule | approved |
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RelatedDiseases for PPP1CC_KCNC2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PPP1CC | C0919267 | ovarian neoplasm | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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