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Fusion gene ID: 28196 |
FusionGeneSummary for PPIF_SNX31 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PPIF_SNX31 | Fusion gene ID: 28196 | Hgene | Tgene | Gene symbol | PPIF | SNX31 | Gene ID | 10105 | 169166 |
| Gene name | peptidylprolyl isomerase F | sorting nexin 31 | |
| Synonyms | CYP3|CyP-M|Cyp-D|CypD | - | |
| Cytomap | 10q22.3 | 8q22.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | peptidyl-prolyl cis-trans isomerase F, mitochondrialPPIase Fcyclophilin 3cyclophilin Dcyclophilin Fmitochondrial cyclophilinpeptidyl-prolyl cis-trans isomerase, mitochondrialrotamase F | sorting nexin-31 | |
| Modification date | 20180523 | 20180529 | |
| UniProtAcc | P30405 | Q8N9S9 | |
| Ensembl transtripts involved in fusion gene | ENST00000394579, ENST00000225174, ENST00000492149, | ENST00000311812, ENST00000428383, ENST00000519521, | |
| Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 5 X 2 X 4=40 |
| # samples | 3 | 5 | |
| ** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: PPIF [Title/Abstract] AND SNX31 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PPIF | GO:0000413 | protein peptidyl-prolyl isomerization | 20676357 |
| Hgene | PPIF | GO:0043066 | negative regulation of apoptotic process | 19228691 |
| Hgene | PPIF | GO:0090201 | negative regulation of release of cytochrome c from mitochondria | 19228691 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BLCA | TCGA-UY-A9PE-01A | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000394579 | ENST00000311812 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| 5CDS-intron | ENST00000394579 | ENST00000428383 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| 5CDS-intron | ENST00000394579 | ENST00000519521 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| Frame-shift | ENST00000225174 | ENST00000311812 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| 5CDS-intron | ENST00000225174 | ENST00000428383 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| 5CDS-intron | ENST00000225174 | ENST00000519521 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| intron-3CDS | ENST00000492149 | ENST00000311812 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| intron-intron | ENST00000492149 | ENST00000428383 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
| intron-intron | ENST00000492149 | ENST00000519521 | PPIF | chr10 | 81111339 | + | SNX31 | chr8 | 101648239 | - |
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FusionProtFeatures for PPIF_SNX31 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PPIF | SNX31 |
| PPIase that catalyzes the cis-trans isomerization ofproline imidic peptide bonds in oligopeptides and may thereforeassist protein folding (PubMed:20676357). Involved in regulationof the mitochondrial permeability transition pore (mPTP). It isproposed that its association with the mPTP is masking a bindingsite for inhibiting inorganic phosphate (Pi) and promotes the openprobability of the mPTP leading to apoptosis or necrosis; therequirement of the PPIase activity for this function is debated.In cooperation with mitochondrial TP53 is involved in activatingoxidative stress-induced necrosis. Involved in modulation ofmitochondrial membrane F(1)F(0) ATP synthase activity andregulation of mitochondrial matrix adenine nucleotide levels. Hasanti-apoptotic activity independently of mPTP and in cooperationwith BCL2 inhibits cytochrome c-dependent apoptosis.{ECO:0000269|PubMed:19228691, ECO:0000269|PubMed:20676357,ECO:0000269|PubMed:22726440, ECO:0000269|PubMed:26387735}. | May be involved in protein trafficking. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PPIF_SNX31 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PPIF_SNX31 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PPIF | SLC25A4, VDAC3, ATP6V1E1, NABP2, SUGP1, TIMM44, STX7, MPLKIP, RBMS1, MRRF, MRPL14, ZC3H11A, RRBP1, MRPL53, SLIRP, TPX2, SRPRB, NDUFAF2, RANGAP1, UBE4B, PTPN11, ATF2, ABI2, BANP, CMTM5, GSTK1, AIFM3, FKBP1A, GPX4, HSPE1, NME1-NME2, SOD1, S100A10, TANGO2, TBL1XR1, SERPINB5 | SNX31 | LZTS2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PPIF_SNX31 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | PPIF | P30405 | DB00091 | Cyclosporine | Peptidyl-prolyl cis-trans isomerase F, mitochondrial | small molecule | approved|investigational|vet_approved |
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RelatedDiseases for PPIF_SNX31 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PPIF | C0021831 | Intestinal Diseases | 1 | CTD_human |
| Hgene | PPIF | C0041582 | Ulcer | 1 | CTD_human |
| Tgene | SNX31 | C0036341 | Schizophrenia | 1 | PSYGENET |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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