|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 2790 |
FusionGeneSummary for ARNTL2_STK38L |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ARNTL2_STK38L | Fusion gene ID: 2790 | Hgene | Tgene | Gene symbol | ARNTL2 | STK38L | Gene ID | 56938 | 23012 |
| Gene name | aryl hydrocarbon receptor nuclear translocator like 2 | serine/threonine kinase 38 like | |
| Synonyms | BMAL2|CLIF|MOP9|PASD9|bHLHe6 | NDR2 | |
| Cytomap | 12p11.23 | 12p11.23 | |
| Type of gene | protein-coding | protein-coding | |
| Description | aryl hydrocarbon receptor nuclear translocator-like protein 2CYCLE-like factorPAS domain-containing protein 9basic-helix-loop-helix-PAS protein MOP9brain and muscle ARNT-like 2class E basic helix-loop-helix protein 6member of PAS protein 9transcrip | serine/threonine-protein kinase 38-likeNDR2 protein kinasenuclear Dbf2-related 2nuclear Dbf2-related kinase 2 | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q8WYA1 | Q9Y2H1 | |
| Ensembl transtripts involved in fusion gene | ENST00000544915, ENST00000395901, ENST00000546179, ENST00000311001, ENST00000261178, ENST00000266503, ENST00000539558, ENST00000542388, | ENST00000389032, ENST00000539577, | |
| Fusion gene scores | * DoF score | 4 X 3 X 4=48 | 6 X 3 X 5=90 |
| # samples | 4 | 6 | |
| ** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ARNTL2 [Title/Abstract] AND STK38L [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ARNTL2 | GO:0006357 | regulation of transcription by RNA polymerase II | 12055078 |
| Hgene | ARNTL2 | GO:0007623 | circadian rhythm | 10864977 |
| Hgene | ARNTL2 | GO:0045893 | positive regulation of transcription, DNA-templated | 12738229 |
| Hgene | ARNTL2 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 15147242 |
| Tgene | STK38L | GO:0006468 | protein phosphorylation | 15037617|15067004 |
| Tgene | STK38L | GO:0035556 | intracellular signal transduction | 15067004 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LUSC | TCGA-63-A5MP-01A | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000544915 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-intron | ENST00000544915 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-5UTR | ENST00000395901 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-intron | ENST00000395901 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-5UTR | ENST00000546179 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-intron | ENST00000546179 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-5UTR | ENST00000311001 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-intron | ENST00000311001 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-5UTR | ENST00000261178 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-intron | ENST00000261178 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-5UTR | ENST00000266503 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| 5CDS-intron | ENST00000266503 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| intron-5UTR | ENST00000539558 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| intron-intron | ENST00000539558 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| intron-5UTR | ENST00000542388 | ENST00000389032 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
| intron-intron | ENST00000542388 | ENST00000539577 | ARNTL2 | chr12 | 27486036 | + | STK38L | chr12 | 27450643 | + |
Top |
FusionProtFeatures for ARNTL2_STK38L |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ARNTL2 | STK38L |
| Involved in the regulation of structural processes indifferentiating and mature neuronal cells. {ECO:0000250,ECO:0000269|PubMed:15037617, ECO:0000269|PubMed:15067004}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for ARNTL2_STK38L |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for ARNTL2_STK38L |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ARNTL2 | CLOCK, NPAS2, RORC, UBE3A, PTTG1, NOP9, MCM2, CIPC, ARNTL, DHTKD1, ZBED8, METTL3, NSMCE4A, OLFM1, HAUS4, IKBKG, SSRP1, CLPP, PER1, MSRA, MDM2, FREM2, HAUS1 | STK38L | KRT31, MOB1A, YWHAB, ARRB1, MOB2, EIF4A3, MAGOH, SMURF1, MOB1B, HSP90AA1, PAN2, FBXO6, LOC100419906, LUZP4, CDC37, PRSS1, HIST1H3E, SKI, RC3H1, PRPH, SLC25A25, CYLD, TRIM25, HEY1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for ARNTL2_STK38L |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for ARNTL2_STK38L |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | ARNTL2 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
| Hgene | ARNTL2 | C0085762 | Alcohol abuse | 2 | PSYGENET |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|