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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 27492

FusionGeneSummary for PLCB3_BAD

check button Fusion gene summary
Fusion gene informationFusion gene name: PLCB3_BAD
Fusion gene ID: 27492
HgeneTgene
Gene symbol

PLCB3

BAD

Gene ID

5331

572

Gene namephospholipase C beta 3BCL2 associated agonist of cell death
Synonyms-BBC2|BCL2L8
Cytomap

11q13.1

11q13.1

Type of geneprotein-codingprotein-coding
Description1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3PLC beta 3phosphoinositide phospholipase C-beta-3phospholipase C, beta 3 (phosphatidylinositol-specific)bcl2-associated agonist of cell deathBCL-X/BCL-2 binding proteinBCL2-antagonist of cell death proteinBCL2-binding component 6BCL2-binding proteinbcl-2-binding component 6bcl-2-like protein 8bcl-XL/Bcl-2-associated death promoterbcl2 antagonist of
Modification date2018052220180523
UniProtAcc

Q01970

Q92934

Ensembl transtripts involved in fusion geneENST00000279230, ENST00000540288, 
ENST00000325234, 
ENST00000394532, 
ENST00000309032, ENST00000544785, 
ENST00000394531, 
Fusion gene scores* DoF score4 X 4 X 2=326 X 5 X 6=180
# samples 49
** MAII scorelog2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(9/180*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PLCB3 [Title/Abstract] AND BAD [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, retained protein feature but frameshift.
DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePLCB3

GO:0003073

regulation of systemic arterial blood pressure

18468998

TgeneBAD

GO:0006915

apoptotic process

19667065

TgeneBAD

GO:0043065

positive regulation of apoptotic process

9388232

TgeneBAD

GO:0043280

positive regulation of cysteine-type endopeptidase activity involved in apoptotic process

18402937

TgeneBAD

GO:0045862

positive regulation of proteolysis

18387192

TgeneBAD

GO:0046931

pore complex assembly

19667065|21081150

TgeneBAD

GO:0071316

cellular response to nicotine

18676776

TgeneBAD

GO:0097202

activation of cysteine-type endopeptidase activity

18387192


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-A8-A06R-01APLCB3chr11

64027706

+BADchr11

64039275

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000279230ENST00000394532PLCB3chr11

64027706

+BADchr11

64039275

-
Frame-shitENST00000279230ENST00000309032PLCB3chr11

64027706

+BADchr11

64039275

-
5CDS-intronENST00000279230ENST00000544785PLCB3chr11

64027706

+BADchr11

64039275

-
5CDS-intronENST00000279230ENST00000394531PLCB3chr11

64027706

+BADchr11

64039275

-
Frame-shitENST00000540288ENST00000394532PLCB3chr11

64027706

+BADchr11

64039275

-
Frame-shitENST00000540288ENST00000309032PLCB3chr11

64027706

+BADchr11

64039275

-
5CDS-intronENST00000540288ENST00000544785PLCB3chr11

64027706

+BADchr11

64039275

-
5CDS-intronENST00000540288ENST00000394531PLCB3chr11

64027706

+BADchr11

64039275

-
Frame-shitENST00000325234ENST00000394532PLCB3chr11

64027706

+BADchr11

64039275

-
Frame-shitENST00000325234ENST00000309032PLCB3chr11

64027706

+BADchr11

64039275

-
5CDS-intronENST00000325234ENST00000544785PLCB3chr11

64027706

+BADchr11

64039275

-
5CDS-intronENST00000325234ENST00000394531PLCB3chr11

64027706

+BADchr11

64039275

-

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FusionProtFeatures for PLCB3_BAD


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PLCB3

Q01970

BAD

Q92934

The production of the second messenger moleculesdiacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) ismediated by activated phosphatidylinositol-specific phospholipaseC enzymes. Promotes cell death. Successfully competes for thebinding to Bcl-X(L), Bcl-2 and Bcl-W, thereby affecting the levelof heterodimerization of these proteins with BAX. Can reverse thedeath repressor activity of Bcl-X(L), but not that of Bcl-2 (Bysimilarity). Appears to act as a link between growth factorreceptor signaling and the apoptotic pathways. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PLCB3_BAD


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PLCB3_BAD


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PLCB3TRPM7, SLC9A3R2, KRIT1, NAA16, SNTA1, XRCC5, MOV10, NXF1, SMYD3, SORT1, SYNCRIP, NEDD1, LPAR2, CDH1BADBCL2A1, MCL1, SFN, EWSR1, BCL2L2, BCL2L1, BCL2, YWHAQ, PRKCI, PIM2, YWHAE, YWHAB, YWHAH, S100A10, AKT1, PRKACA, RPS6KA1, RPS6KA5, YWHAZ, YWHAG, SUMO2, PPP1CA, BAX, SNCA, VCP, RAF1, PAK1, BRAF, ARAF, CREB3L3, CDKN1A, PRDX2, KEAP1, STEAP3, GIMAP5, PRKD1, PRKCE, NDUFA12, LIMK1, SORT1, SYNCRIP, APTX, CBY1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PLCB3_BAD


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PLCB3_BAD


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneBADC0033578Prostatic Neoplasms2CTD_human
TgeneBADC0007787Transient Ischemic Attack1CTD_human
TgeneBADC0023418leukemia1CTD_human