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Fusion gene ID: 2709 |
FusionGeneSummary for ARL15_ITGA1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ARL15_ITGA1 | Fusion gene ID: 2709 | Hgene | Tgene | Gene symbol | ARL15 | ITGA1 | Gene ID | 54622 | 3672 |
Gene name | ADP ribosylation factor like GTPase 15 | integrin subunit alpha 1 | |
Synonyms | ARFRP2 | CD49a|VLA1 | |
Cytomap | 5q11.2 | 5q11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ADP-ribosylation factor-like protein 15ADP-ribosylation factor-like 15ADP-ribosylation factor-related protein 2ARF-related protein 2 | integrin alpha-1CD49 antigen-like family member AVLA-1laminin and collagen receptorvery late activation protein 1 | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q9NXU5 | P56199 | |
Ensembl transtripts involved in fusion gene | ENST00000502271, ENST00000504924, ENST00000510591, ENST00000507646, | ENST00000282588, ENST00000504086, | |
Fusion gene scores | * DoF score | 11 X 9 X 5=495 | 2 X 2 X 2=8 |
# samples | 11 | 2 | |
** MAII score | log2(11/495*10)=-2.16992500144231 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: ARL15 [Title/Abstract] AND ITGA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ITGA1 | GO:0032516 | positive regulation of phosphoprotein phosphatase activity | 15592458 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-HS-A5N8-01A | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000502271 | ENST00000282588 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
5UTR-intron | ENST00000502271 | ENST00000504086 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
In-frame | ENST00000504924 | ENST00000282588 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
5CDS-intron | ENST00000504924 | ENST00000504086 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
5UTR-3CDS | ENST00000510591 | ENST00000282588 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
5UTR-intron | ENST00000510591 | ENST00000504086 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
In-frame | ENST00000507646 | ENST00000282588 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
5CDS-intron | ENST00000507646 | ENST00000504086 | ARL15 | chr5 | 53409032 | - | ITGA1 | chr5 | 52243175 | + |
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FusionProtFeatures for ARL15_ITGA1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ARL15 | ITGA1 |
Integrin alpha-1/beta-1 is a receptor for laminin andcollagen. It recognizes the proline-hydroxylated sequence G-F-P-G-E-R in collagen. Involved in anchorage-dependent, negativeregulation of EGF-stimulated cell growth.{ECO:0000269|PubMed:15592458}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ARL15_ITGA1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_ARL15_ENST00000504924_chr5_53409032_-_ITGA1_ENST00000282588_chr5_52243175_+_208aa MSDLRITEAFLYMDYLCFRALCCKGPPPARPEYDLVCIGLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIR KYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQELAIQISKDGLPGRVPLWVILLSAFAG >In-frame_ARL15_ENST00000507646_chr5_53409032_-_ITGA1_ENST00000282588_chr5_52243175_+_208aa MSDLRITEAFLYMDYLCFRALCCKGPPPARPEYDLVCIGLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIR KYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQELAIQISKDGLPGRVPLWVILLSAFAG |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_ARL15_ENST00000504924_chr5_53409032_-_ITGA1_ENST00000282588_chr5_52243175_+_624nt ATGTCTGATCTCCGAATAACTGAGGCGTTTCTGTACATGGATTATCTGTGTTTTAGAGCACTTTGCTGCAAGGGACCACCACCTGCACGA CCAGAATATGACCTGGTTTGCATAGGCCTCACAGGTTCTGGCAAAACCAGTCTGTTGTCCAAACTCTGCAGTGAAAGCCCCGATAACGTC GTGTCGACCACAGGTTTTAGTATTAAAGCAGTGCCATTCCAGAATGCCATCTTGAATGTAAAAGAACTTGGAGGGGCTGATAACATCCGG AAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGCTAGA AATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGCTCGC TCAGTACAAGAGCTTGCTATTCAAATATCCAAAGATGGGCTACCGGGCAGAGTGCCATTATGGGTCATCCTGCTGAGTGCTTTTGCCGGA >In-frame_ARL15_ENST00000507646_chr5_53409032_-_ITGA1_ENST00000282588_chr5_52243175_+_624nt ATGTCTGATCTCCGAATAACTGAGGCGTTTCTGTACATGGATTATCTGTGTTTTAGAGCACTTTGCTGCAAGGGACCACCACCTGCACGA CCAGAATATGACCTGGTTTGCATAGGCCTCACAGGTTCTGGCAAAACCAGTCTGTTGTCCAAACTCTGCAGTGAAAGCCCCGATAACGTC GTGTCGACCACAGGTTTTAGTATTAAAGCAGTGCCATTCCAGAATGCCATCTTGAATGTAAAAGAACTTGGAGGGGCTGATAACATCCGG AAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGCTAGA AATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGCTCGC TCAGTACAAGAGCTTGCTATTCAAATATCCAAAGATGGGCTACCGGGCAGAGTGCCATTATGGGTCATCCTGCTGAGTGCTTTTGCCGGA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_ARL15_ENST00000504924_chr5_53409032_-_ITGA1_ENST00000282588_chr5_52243175_+_7477nt GTTGCTGGCTTTTTCAGGAGCTGCTCGCTCGCAGCCAGAGACGCTGCTTTTTTTTTCCGGGTTCGGAGCCGTTCCGGATGCTTTAGGCTG CCGGATGTCTGATCTCCGAATAACTGAGGCGTTTCTGTACATGGATTATCTGTGTTTTAGAGCACTTTGCTGCAAGGGACCACCACCTGC ACGACCAGAATATGACCTGGTTTGCATAGGCCTCACAGGTTCTGGCAAAACCAGTCTGTTGTCCAAACTCTGCAGTGAAAGCCCCGATAA CGTCGTGTCGACCACAGGTTTTAGTATTAAAGCAGTGCCATTCCAGAATGCCATCTTGAATGTAAAAGAACTTGGAGGGGCTGATAACAT CCGGAAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGC TAGAAATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGC TCGCTCAGTACAAGAGCTTGCTATTCAAATATCCAAAGATGGGCTACCGGGCAGAGTGCCATTATGGGTCATCCTGCTGAGTGCTTTTGC CGGATTGTTGCTGTTAATGCTGCTCATTTTAGCACTGTGGAAGATTGGATTCTTCAAAAGACCACTGAAAAAGAAAATGGAGAAATGAAA TATTTTATGAAAGAAAATAATAACAATTATTCAATAATCTATCCTCAGGTTTGCCTCAAATATGTGACAAGAAATGTATAATTCATGACA TAGTCATGTAACTATGTAATCCATCAGGGATTCATTACTTGGAAAATGACAGGTCATGCATTATCCAAAAACAATACCAAAAAGACATAT TTTATAAAATGACAAAAAATATTTTACATAATTACTCATTTTTGTTGAGTAAGCAAAATTACAAAGTGTTTTTAAAAAAACCTGTACAAA TATGTTTATGTATTAAATCACCATCCAAAATATTTAAGGAATATATAAAAAGATTTTTATGATCATAGAAACATCTATTTTCAAAACAAT ATAAATTAAGCTTTTCCCCTTGATTCCTGTTGGATATCCATGTTCAGCATGACAGTCAGCACTCGTAAATGCCAAGAAAAGAATTACCTG AAAAAGATCATTTCTCCCTATTCAAATGAGAATATTTTCCCTTGGTAGAATCCATATACAATATGGATTGAAAATTAAGTCACCAAGAAT ACATTTAGCATCTTTGTGTTGGGTTCTATACCTAAAAATTTTCCCTCCCTGCCCAAGGTGATTGGAAAGTACTGCAATTGAGCTAAAATT TTATCTAGGATGGAAAATCAGGATAGACTCGTTTAAAAACAAGTATATTAAATGGGTTAAATTAAGCTTTTACAGAACATGCTTAATTTT GATATTGAGCTCTAAATGCAAAACTCTTTTATACTGAAAAAACACTTAAAGTAGTTTTGTGTGGCATCACAGTGATTTGTCATGAAAAGC CATATATGGGGGACATGCTAAAATGGCTTCTGAATGAAATACGACAGCAGAGAAAGATGCCACTGAAATGCTGAAATTATCTTTGCTGAG CAGCTTTTGAATGCTAAGGGTTCCAGTATGTGACCCAAAGAAAGAGTTGTCTCAACTCCTTGGTACAGGGTTCATTCAAACCCCCAAGCT GTGAGAGTGTGTTTATTTTTAATTTTTTAAAAGGTATTTAATTTCCAACCACACTTCTTATTTTTTTGAAAAGACAATTTTCCATTTCAG TATTACATTTTACCAAGAAGTCACTGCTTTTTAGGTGTGTTGCATCAATATTTAAATAAAATCCCAGAAATGTATTTTAAAGAATTTCAG GTTTGAAAACTCAAACCAACAGGAAGATATCACACCTTTGTATGTGCTTCTTTGTTCTTGAAGTAGTCATTATGGTTCATTGGAATCTAC TGTAGCATAAGCTCCTAGGTTGCTCCATTTCTTAGGAAAATAGCAATGAATGAATGTATAGTAGCTGCATGTGTGAACTACTGCTGTAAA GTTTGCTGACATTTCTGCAACAACATTTCTCCATCTGATTTACCAGAACCTGTAACAAGACCAGAACATGTATTCATCCAGAAACTCCTG GGCTCTGCTTTGTTCAAAGAGGAGCAAATCCACATAGAAATTAAATGTTATAAATTTATTTTTTTAAACTAATTTCCAAAGAATTTAGCT GAAGACTCAGAGTCAGCCTACCTCTTGACTCTCCACATCCGCATCTAAGATCCTGAAGGCCAAAGGAATGCGCCTGTGGGATGCCAAAGC CATCAGTAGCTGGAAGAAAGAATACCTCTTTCTAGAGGTTTGGTGTCCTCTTGCTGGCCTGTCATTATTTGGAAATACGCGCTTTTGGAA TTTCCTTCATTTTCGCTATTTCCAGGTTCAGAAATCATACCTACCACTTGTTCTTTCTTTGCCCAGTAAAACTCAGGGTTTCTCTTATTC AGAGTTACCATGTTGCACACCCCCAGTGCTCAGCCTGCCCAGAAGCCCTTCTCTGATCTCAGCAAGATCTTAGTAGTAAAGCTAACGGAT CCATTGAAATTCATACTCAGCATCTGTGACTACTAGACAAAGCCCATTTACTGAACCATAAGTGTGCACTTTTAAACTAAATTGTTAACT GAAAGGGAAAAAATAGAAATGAGGGCATTTTGAAGTTTTTAGAAAAGAGAGGAAGAGCTGTTGGCCAGATCAAAGAGATACTTATAAGCC CGGCACAATTTTTAACATAAGTCATTCCTGGCTATTAAGTAAAATATTTCATGAACCAGAAGTCCTGTTTCTCTAATATTATAATTTGTT GAGGTTTGTGTGTGTGTGTGTGTGCATGTGCAGACACATGTACACATATAAATTGAATACAAAAATAGCTCTATAACACCAAAAAACAGA GTTTACAGAAAATAAACACAAAAGCTATATCTGCAAGACAAGTTTGATTCATCTAGTTTCATATAGTTTCATATAGTTTCATTTTTATTA ATATTTAGGTTTAACTTATAGTTCTGCAATTATTTAAAAAACAAGTACAGAGCGTTTGATTAAAAAAAGTCAACAAATGTTTCAAAACAG CTTTGTACAAATGTTATAAAACATATTTAATGATTAAGAAATGTACTAGACTCTATCATTTACTTTTAAAACATTTAATTAGAAAAACAG GTGATATTTAAGACTATTTATAAACTTATTGGCCAAATTGCCAAAAAGTTTCTTTTTCTCTAACTTTGGTATTCTAAATAATTGATTATT GCTCCCATTGTAAACTGAACCATGTATGCACTCTCTTTTCTGACCAAACTACAATGGTATATTGGTAAATTATTTAACAACACACTGTCC AGGAGGGAAAAAAAAAACAGTCTCTGATTTGTATCATTTGCCAATTTCCATGGTCCAAATATTCTCTCTCCATTTTCAAACTACCAAAGT GACCCTAATCAGCTTACAAAATTCCTGGAAATGTATCTGCCACCTCTTACCAACCAGTGTGAGCTGACTTCAGCACACCACTGAGACAGA TTACACGATAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTGATAGAGAACATGTTGTGTCTATATA CATATCCAATGACACACAGTATAATCATGTTTTAAATTATGCCAAAAGTACTGATTATATCAAGCCCAGTAAACATAATGCTACACAGCA CCCATTCTTTAATTTTGATTTCTAAAATTATAACCTTCCTTTGATATTAATAAAATGTTATGAACTTGCAGGAGAAGGAAGGAGTTGAAA GAAGGAAAATATAAAGGGTGATCCACAGTGAAAATCAGACCTACACAAGCCACAAAAAAATTGTCTCATTTTCCCAAGGAATTCAAAGTC CTGTGATACACATTACAAAAGATGACACTTTGTAAATATTTTGAACTTCTATGATCCAATTTCAACTTCATTGGTCCAATTTGTCAAACT ATTTTCCTCTGAGCACTAGATTCATGGGCAATTTAATCTCTGAATATTTTCTGTGTCATAAGTGTGCTTGAAAAGAGGCTTGTAGTAAAC AGATATTTTTACAAAATTTGATGCTTCTGCAACCATAATAATTTTATCTATAAATGCGTATATACATATATATATATATATATATACACA TACACTCACATGCAGATATTTACATATATAGATATTCTCTTTTCCTTTTATAAAATCAAAGTCTAGGCTCAATTGGAAAATGGAAATATT TGCACCAAAAGAAAAAAGTGCCATTGTTGTGATCAATGGAGTAAAGCTGGGGTATAGTAGAGGCTGGGGAATCCCTGCCCATGTTCTCTC CAAGGCCACAGCTTGCACACCGTGAATGGTGGCCCCACTGGCTCCATGGAGTGTGCCTTCACGCGGGGGAATGTCCTTGTCCAACACGCT GTAATCTACTCCATGGGAACTGACTGTCCTGCTTTTCACAACATTGAGAAACAGGCCCAGAGCCTGTCTCATGTGCCAGGTGCAGTCACA TTATTGTTAAAATAAAGTGGCTTCTGACAAATCAGTTTTTCAAAATAGCATCCTATGTACTTTTCATTTCTTCCAACAACCCTCAGGCCC CCTTTTGCCAGTTTTCTCCCCCAGGGGAGATTTTCAAGACTACTGGAGAAAAATCTGTTAATAAAACATTTGCTCTGAGTACCAGCTTCA GTGACTCAATCATTTATACAGGATTTCAGTGTTTTGTTCTGCAGCGGTGTTCTAAAGGGTTCACATAGTATAATGGAGGAGGGACAAAGC AGAATATACTTCCAAGCTGGAACATCTTTAAGACATTTACAAACTGTTATGGGACACTATCAGCAACTACGCCTGGGGAAGCTAGCAGGA TTTAGCTCTTCAATGGCCCTCCAAATGCACCCAACAATCGCCAACCTCACCCATGGAAATCATCTAAAAAATGAAAAGAAGGGCCTTAAA GTCCTCACATGGATGCTGTATTTATAACTAAAATGTACAGTTTAATTCTAAATAGCAGGCTTTTAAATGCAAACAGCTTCCAGGTGAGTC CTCTGGCTGCCAATCAGACTGCTGATTCTAAACCATTCTCACACAGAATTTCTGAAACCAACACCAGGTATTAATTGTTAACTGCAGTGA AAGGAAACCAAGGCACATTACAAAAGGCTAAATGCTGCTGTTTCTAAGTGGAAGCACTGTTGAACAACACTCTTAGGTGGAATAAGAAAA TTAGGGTTAAACTGTAACATTGTAATCGGACGAACAAATCAGCATCTTTGATCCTCAGGTTAAAATTTAATCTTAAATTTAGAAATTCAA AGTAACAGCCTTTAACCATTAACCTTGAGGAAAATGTGAAGTAGCATCTGGAGTCTCTTAAGCCCCAGCCCTGTTGTCCCCTACAGCATC TCCACCCAGGAAGTCCAGTTCCTAACTAATGGGAATGGATCCTTTTCCCATTATAAAGGGCCGATGCTTAACCCTTGAACCCACTACTGT TCTTATGCCCCAAGATCTGCACCTTACATCAGGCACCCGGGAATGCTTCTCATTGAAATTTTACCATACCAAAAAATATGTAAGGGTGAC TCATCACTCCTAACTTTGGACTCCTTGCTTTGAGATCGGTATTTTTTTCTCTCTCTTTACATATAGCAAAAGCTTTCCCCAGTAGCTGAT GAATTTAGAACTTTATACAAGACTCCCTAGCATTTTCCTCCTCCCACAGGCTGGAGAATTTCAGTGCTATGAGACTGGGCAGTAGGAGCC AGAGCCAATTTGCAGGATCTCTTTTCCTTCTGCCTTCCAGTTGGCTTCTCTTCTCAGCTGCGTGGTGGGGATGATTTGGGGTTTCCTCAG CAAGGCCATTCTCTGCCTTGTGCCCATAGCAGGGCCTTGGGTGGTGACATGTTATCTTTGTTGGTGAGCAGACACTCAGAGATCCTTTAA TTATCTGACACACCAGGGAAATCTTGGCAATCAACTAAGGACCTGTGACACTCATAACTATGTTTACATTTGGCTTTAGCATATTTCAGG TAATATCTTTATGAAAAAAAGATGAAGTATGGAATTGTAGGAACTCTTTTGCAATAGACTGAGATCCAATGTTTAAATCTTTTTATTTCA GTTTGATCTGTGCCTTTAGATTGGGGACAAAATTTTAAAAACAAATCTTCCAAATGACACCACAATGAAAGCCAGTTGTGGTCTTGAAAA ATCTCTCTATTGCATTACTTATCCTCACCCTTGTTTTTTAAGAGGTAGAGAGAGATTACTGGGAAGCAGTGAGCCAACATAATTGTCCTT TCCTCTACAGAATAGCTGTGCAGAAGGGGACCACCACACTTAGGACCAGTGCCAGGTGACAATCTTTCCGTCATGCTGCTGCAGCATTTT GCACCTTGAGAGACAGGAAAAAAAATGGGGGTGAGGGAGTGGAAGATGATGAAACTATTTCTCTTTTATGTCTACATCCTTACTCCTCAA AATACTTTAAGCTCACTCAGACCCCATATACCCTGCCCACAATACTAACACATGTACTTTGCATAAGTAAATTGTTGATTAAATAAGAGC AAAACTATATTCTTATGTGTAGATTAACCAAGGCTAATTTCCTGGAGTTTAATACACTTTGGATTCAAGTAAAAACAATCACTTAATGCA GCAACATCTCAGACCCTCTTCACTCTAGAACCGTTTTATACAAGAGAACTCAACATTTACTGTTTTATTTCTGATATTGCCTGCCATTAC TCAGGATGCAAGAGATGCTCTGCATTCCTTATTAGGAAAAATTGGCCTGTAAGGAGAATGGTATACTGCGTATTACTACTGTGAGACTGT AAAATTGTTAATGGACAGTGTAAAGAATTGTATTCATTTTATTAGCAAGAAAAATATTGCATACAAGAACTACTGCCCTGAAATATCCAT CACTCCAATGAACTGTTCTGCCTGATCTAACATAAAGTTATATTTCATTGCTCATTTTTTTTTGCCTCACTAAAATGACTAACTTAAGGG AATGTGCATTTCTACAAGACTTTAATTGGATAAACTCATTAGAAGAAAATGTTTCGATTGCATTCAGGAACAAAGAAGCATAACCTTTGT TGACTCTTGTAATTTATTATATGCTTCATTTAAACCCATTTTGTAAAGAAATCAGGTAACAGTCATTTAATCTGATATAATTAGAAATAG CTGAGAGAGTAAAAAAGCATTTTGAATGTCCTATGTATGGCATATCCTGTACACCAATTGAAGGTCAGAGCTTTGGTATTTTTGTATAAT TCTGTCTTATCTGGTGCATCAGCTGTGTATTTTACGTCAAGGTAAATGAGCATCCTGTTTTATATGTTAAATTTTAAAAATGACTTTTTC >In-frame_ARL15_ENST00000507646_chr5_53409032_-_ITGA1_ENST00000282588_chr5_52243175_+_7480nt GCTGTTGCTGGCTTTTTCAGGAGCTGCTCGCTCGCAGCCAGAGACGCTGCTTTTTTTTTCCGGGTTCGGAGCCGTTCCGGATGCTTTAGG CTGCCGGATGTCTGATCTCCGAATAACTGAGGCGTTTCTGTACATGGATTATCTGTGTTTTAGAGCACTTTGCTGCAAGGGACCACCACC TGCACGACCAGAATATGACCTGGTTTGCATAGGCCTCACAGGTTCTGGCAAAACCAGTCTGTTGTCCAAACTCTGCAGTGAAAGCCCCGA TAACGTCGTGTCGACCACAGGTTTTAGTATTAAAGCAGTGCCATTCCAGAATGCCATCTTGAATGTAAAAGAACTTGGAGGGGCTGATAA CATCCGGAAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGC TGCTAGAAATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGC AGCTCGCTCAGTACAAGAGCTTGCTATTCAAATATCCAAAGATGGGCTACCGGGCAGAGTGCCATTATGGGTCATCCTGCTGAGTGCTTT TGCCGGATTGTTGCTGTTAATGCTGCTCATTTTAGCACTGTGGAAGATTGGATTCTTCAAAAGACCACTGAAAAAGAAAATGGAGAAATG AAATATTTTATGAAAGAAAATAATAACAATTATTCAATAATCTATCCTCAGGTTTGCCTCAAATATGTGACAAGAAATGTATAATTCATG ACATAGTCATGTAACTATGTAATCCATCAGGGATTCATTACTTGGAAAATGACAGGTCATGCATTATCCAAAAACAATACCAAAAAGACA TATTTTATAAAATGACAAAAAATATTTTACATAATTACTCATTTTTGTTGAGTAAGCAAAATTACAAAGTGTTTTTAAAAAAACCTGTAC AAATATGTTTATGTATTAAATCACCATCCAAAATATTTAAGGAATATATAAAAAGATTTTTATGATCATAGAAACATCTATTTTCAAAAC AATATAAATTAAGCTTTTCCCCTTGATTCCTGTTGGATATCCATGTTCAGCATGACAGTCAGCACTCGTAAATGCCAAGAAAAGAATTAC CTGAAAAAGATCATTTCTCCCTATTCAAATGAGAATATTTTCCCTTGGTAGAATCCATATACAATATGGATTGAAAATTAAGTCACCAAG AATACATTTAGCATCTTTGTGTTGGGTTCTATACCTAAAAATTTTCCCTCCCTGCCCAAGGTGATTGGAAAGTACTGCAATTGAGCTAAA ATTTTATCTAGGATGGAAAATCAGGATAGACTCGTTTAAAAACAAGTATATTAAATGGGTTAAATTAAGCTTTTACAGAACATGCTTAAT TTTGATATTGAGCTCTAAATGCAAAACTCTTTTATACTGAAAAAACACTTAAAGTAGTTTTGTGTGGCATCACAGTGATTTGTCATGAAA AGCCATATATGGGGGACATGCTAAAATGGCTTCTGAATGAAATACGACAGCAGAGAAAGATGCCACTGAAATGCTGAAATTATCTTTGCT GAGCAGCTTTTGAATGCTAAGGGTTCCAGTATGTGACCCAAAGAAAGAGTTGTCTCAACTCCTTGGTACAGGGTTCATTCAAACCCCCAA GCTGTGAGAGTGTGTTTATTTTTAATTTTTTAAAAGGTATTTAATTTCCAACCACACTTCTTATTTTTTTGAAAAGACAATTTTCCATTT CAGTATTACATTTTACCAAGAAGTCACTGCTTTTTAGGTGTGTTGCATCAATATTTAAATAAAATCCCAGAAATGTATTTTAAAGAATTT CAGGTTTGAAAACTCAAACCAACAGGAAGATATCACACCTTTGTATGTGCTTCTTTGTTCTTGAAGTAGTCATTATGGTTCATTGGAATC TACTGTAGCATAAGCTCCTAGGTTGCTCCATTTCTTAGGAAAATAGCAATGAATGAATGTATAGTAGCTGCATGTGTGAACTACTGCTGT AAAGTTTGCTGACATTTCTGCAACAACATTTCTCCATCTGATTTACCAGAACCTGTAACAAGACCAGAACATGTATTCATCCAGAAACTC CTGGGCTCTGCTTTGTTCAAAGAGGAGCAAATCCACATAGAAATTAAATGTTATAAATTTATTTTTTTAAACTAATTTCCAAAGAATTTA GCTGAAGACTCAGAGTCAGCCTACCTCTTGACTCTCCACATCCGCATCTAAGATCCTGAAGGCCAAAGGAATGCGCCTGTGGGATGCCAA AGCCATCAGTAGCTGGAAGAAAGAATACCTCTTTCTAGAGGTTTGGTGTCCTCTTGCTGGCCTGTCATTATTTGGAAATACGCGCTTTTG GAATTTCCTTCATTTTCGCTATTTCCAGGTTCAGAAATCATACCTACCACTTGTTCTTTCTTTGCCCAGTAAAACTCAGGGTTTCTCTTA TTCAGAGTTACCATGTTGCACACCCCCAGTGCTCAGCCTGCCCAGAAGCCCTTCTCTGATCTCAGCAAGATCTTAGTAGTAAAGCTAACG GATCCATTGAAATTCATACTCAGCATCTGTGACTACTAGACAAAGCCCATTTACTGAACCATAAGTGTGCACTTTTAAACTAAATTGTTA ACTGAAAGGGAAAAAATAGAAATGAGGGCATTTTGAAGTTTTTAGAAAAGAGAGGAAGAGCTGTTGGCCAGATCAAAGAGATACTTATAA GCCCGGCACAATTTTTAACATAAGTCATTCCTGGCTATTAAGTAAAATATTTCATGAACCAGAAGTCCTGTTTCTCTAATATTATAATTT GTTGAGGTTTGTGTGTGTGTGTGTGTGCATGTGCAGACACATGTACACATATAAATTGAATACAAAAATAGCTCTATAACACCAAAAAAC AGAGTTTACAGAAAATAAACACAAAAGCTATATCTGCAAGACAAGTTTGATTCATCTAGTTTCATATAGTTTCATATAGTTTCATTTTTA TTAATATTTAGGTTTAACTTATAGTTCTGCAATTATTTAAAAAACAAGTACAGAGCGTTTGATTAAAAAAAGTCAACAAATGTTTCAAAA CAGCTTTGTACAAATGTTATAAAACATATTTAATGATTAAGAAATGTACTAGACTCTATCATTTACTTTTAAAACATTTAATTAGAAAAA CAGGTGATATTTAAGACTATTTATAAACTTATTGGCCAAATTGCCAAAAAGTTTCTTTTTCTCTAACTTTGGTATTCTAAATAATTGATT ATTGCTCCCATTGTAAACTGAACCATGTATGCACTCTCTTTTCTGACCAAACTACAATGGTATATTGGTAAATTATTTAACAACACACTG TCCAGGAGGGAAAAAAAAAACAGTCTCTGATTTGTATCATTTGCCAATTTCCATGGTCCAAATATTCTCTCTCCATTTTCAAACTACCAA AGTGACCCTAATCAGCTTACAAAATTCCTGGAAATGTATCTGCCACCTCTTACCAACCAGTGTGAGCTGACTTCAGCACACCACTGAGAC AGATTACACGATAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTGATAGAGAACATGTTGTGTCTAT ATACATATCCAATGACACACAGTATAATCATGTTTTAAATTATGCCAAAAGTACTGATTATATCAAGCCCAGTAAACATAATGCTACACA GCACCCATTCTTTAATTTTGATTTCTAAAATTATAACCTTCCTTTGATATTAATAAAATGTTATGAACTTGCAGGAGAAGGAAGGAGTTG AAAGAAGGAAAATATAAAGGGTGATCCACAGTGAAAATCAGACCTACACAAGCCACAAAAAAATTGTCTCATTTTCCCAAGGAATTCAAA GTCCTGTGATACACATTACAAAAGATGACACTTTGTAAATATTTTGAACTTCTATGATCCAATTTCAACTTCATTGGTCCAATTTGTCAA ACTATTTTCCTCTGAGCACTAGATTCATGGGCAATTTAATCTCTGAATATTTTCTGTGTCATAAGTGTGCTTGAAAAGAGGCTTGTAGTA AACAGATATTTTTACAAAATTTGATGCTTCTGCAACCATAATAATTTTATCTATAAATGCGTATATACATATATATATATATATATATAC ACATACACTCACATGCAGATATTTACATATATAGATATTCTCTTTTCCTTTTATAAAATCAAAGTCTAGGCTCAATTGGAAAATGGAAAT ATTTGCACCAAAAGAAAAAAGTGCCATTGTTGTGATCAATGGAGTAAAGCTGGGGTATAGTAGAGGCTGGGGAATCCCTGCCCATGTTCT CTCCAAGGCCACAGCTTGCACACCGTGAATGGTGGCCCCACTGGCTCCATGGAGTGTGCCTTCACGCGGGGGAATGTCCTTGTCCAACAC GCTGTAATCTACTCCATGGGAACTGACTGTCCTGCTTTTCACAACATTGAGAAACAGGCCCAGAGCCTGTCTCATGTGCCAGGTGCAGTC ACATTATTGTTAAAATAAAGTGGCTTCTGACAAATCAGTTTTTCAAAATAGCATCCTATGTACTTTTCATTTCTTCCAACAACCCTCAGG CCCCCTTTTGCCAGTTTTCTCCCCCAGGGGAGATTTTCAAGACTACTGGAGAAAAATCTGTTAATAAAACATTTGCTCTGAGTACCAGCT TCAGTGACTCAATCATTTATACAGGATTTCAGTGTTTTGTTCTGCAGCGGTGTTCTAAAGGGTTCACATAGTATAATGGAGGAGGGACAA AGCAGAATATACTTCCAAGCTGGAACATCTTTAAGACATTTACAAACTGTTATGGGACACTATCAGCAACTACGCCTGGGGAAGCTAGCA GGATTTAGCTCTTCAATGGCCCTCCAAATGCACCCAACAATCGCCAACCTCACCCATGGAAATCATCTAAAAAATGAAAAGAAGGGCCTT AAAGTCCTCACATGGATGCTGTATTTATAACTAAAATGTACAGTTTAATTCTAAATAGCAGGCTTTTAAATGCAAACAGCTTCCAGGTGA GTCCTCTGGCTGCCAATCAGACTGCTGATTCTAAACCATTCTCACACAGAATTTCTGAAACCAACACCAGGTATTAATTGTTAACTGCAG TGAAAGGAAACCAAGGCACATTACAAAAGGCTAAATGCTGCTGTTTCTAAGTGGAAGCACTGTTGAACAACACTCTTAGGTGGAATAAGA AAATTAGGGTTAAACTGTAACATTGTAATCGGACGAACAAATCAGCATCTTTGATCCTCAGGTTAAAATTTAATCTTAAATTTAGAAATT CAAAGTAACAGCCTTTAACCATTAACCTTGAGGAAAATGTGAAGTAGCATCTGGAGTCTCTTAAGCCCCAGCCCTGTTGTCCCCTACAGC ATCTCCACCCAGGAAGTCCAGTTCCTAACTAATGGGAATGGATCCTTTTCCCATTATAAAGGGCCGATGCTTAACCCTTGAACCCACTAC TGTTCTTATGCCCCAAGATCTGCACCTTACATCAGGCACCCGGGAATGCTTCTCATTGAAATTTTACCATACCAAAAAATATGTAAGGGT GACTCATCACTCCTAACTTTGGACTCCTTGCTTTGAGATCGGTATTTTTTTCTCTCTCTTTACATATAGCAAAAGCTTTCCCCAGTAGCT GATGAATTTAGAACTTTATACAAGACTCCCTAGCATTTTCCTCCTCCCACAGGCTGGAGAATTTCAGTGCTATGAGACTGGGCAGTAGGA GCCAGAGCCAATTTGCAGGATCTCTTTTCCTTCTGCCTTCCAGTTGGCTTCTCTTCTCAGCTGCGTGGTGGGGATGATTTGGGGTTTCCT CAGCAAGGCCATTCTCTGCCTTGTGCCCATAGCAGGGCCTTGGGTGGTGACATGTTATCTTTGTTGGTGAGCAGACACTCAGAGATCCTT TAATTATCTGACACACCAGGGAAATCTTGGCAATCAACTAAGGACCTGTGACACTCATAACTATGTTTACATTTGGCTTTAGCATATTTC AGGTAATATCTTTATGAAAAAAAGATGAAGTATGGAATTGTAGGAACTCTTTTGCAATAGACTGAGATCCAATGTTTAAATCTTTTTATT TCAGTTTGATCTGTGCCTTTAGATTGGGGACAAAATTTTAAAAACAAATCTTCCAAATGACACCACAATGAAAGCCAGTTGTGGTCTTGA AAAATCTCTCTATTGCATTACTTATCCTCACCCTTGTTTTTTAAGAGGTAGAGAGAGATTACTGGGAAGCAGTGAGCCAACATAATTGTC CTTTCCTCTACAGAATAGCTGTGCAGAAGGGGACCACCACACTTAGGACCAGTGCCAGGTGACAATCTTTCCGTCATGCTGCTGCAGCAT TTTGCACCTTGAGAGACAGGAAAAAAAATGGGGGTGAGGGAGTGGAAGATGATGAAACTATTTCTCTTTTATGTCTACATCCTTACTCCT CAAAATACTTTAAGCTCACTCAGACCCCATATACCCTGCCCACAATACTAACACATGTACTTTGCATAAGTAAATTGTTGATTAAATAAG AGCAAAACTATATTCTTATGTGTAGATTAACCAAGGCTAATTTCCTGGAGTTTAATACACTTTGGATTCAAGTAAAAACAATCACTTAAT GCAGCAACATCTCAGACCCTCTTCACTCTAGAACCGTTTTATACAAGAGAACTCAACATTTACTGTTTTATTTCTGATATTGCCTGCCAT TACTCAGGATGCAAGAGATGCTCTGCATTCCTTATTAGGAAAAATTGGCCTGTAAGGAGAATGGTATACTGCGTATTACTACTGTGAGAC TGTAAAATTGTTAATGGACAGTGTAAAGAATTGTATTCATTTTATTAGCAAGAAAAATATTGCATACAAGAACTACTGCCCTGAAATATC CATCACTCCAATGAACTGTTCTGCCTGATCTAACATAAAGTTATATTTCATTGCTCATTTTTTTTTGCCTCACTAAAATGACTAACTTAA GGGAATGTGCATTTCTACAAGACTTTAATTGGATAAACTCATTAGAAGAAAATGTTTCGATTGCATTCAGGAACAAAGAAGCATAACCTT TGTTGACTCTTGTAATTTATTATATGCTTCATTTAAACCCATTTTGTAAAGAAATCAGGTAACAGTCATTTAATCTGATATAATTAGAAA TAGCTGAGAGAGTAAAAAAGCATTTTGAATGTCCTATGTATGGCATATCCTGTACACCAATTGAAGGTCAGAGCTTTGGTATTTTTGTAT AATTCTGTCTTATCTGGTGCATCAGCTGTGTATTTTACGTCAAGGTAAATGAGCATCCTGTTTTATATGTTAAATTTTAAAAATGACTTT |
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FusionGenePPI for ARL15_ITGA1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ARL15 | GRIPAP1, B4GALT3, FUNDC2, CCDC90B, UBR1, PDE6D, PTN, RPL8, TFG, TUBB2A, CRMP1, GAPDH, UNC119, CNNM1, IREB2, TRPM7, LONRF2, ZNF333, FBXO10, CNNM4, TYW1B, SLC25A20, CNNM2, UBE2K, SLC37A3, RTEL1, NOMO1, AGPAT3, METTL9, SERINC1, NCLN, TMEM120B, TMEM120A | ITGA1 | BIN1, AUP1, TLN1, MATN1, LAMA1, ITGB1, SHARPIN, LGALS3, LGALS8, LIMK1, FAM178A, LMAN2L |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ARL15_ITGA1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARL15_ITGA1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ITGA1 | C0017639 | Gliosis | 1 | CTD_human |