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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 26780

FusionGeneSummary for PGAP1_NCKAP5

check button Fusion gene summary
Fusion gene informationFusion gene name: PGAP1_NCKAP5
Fusion gene ID: 26780
HgeneTgene
Gene symbol

PGAP1

NCKAP5

Gene ID

80055

344148

Gene namepost-GPI attachment to proteins 1NCK associated protein 5
SynonymsBst1|ISPD3024|MRT42|SPG67ERIH1|ERIH2|NAP5
Cytomap

2q33.1

2q21.2

Type of geneprotein-codingprotein-coding
DescriptionGPI inositol-deacylasepost-GPI attachment to proteins factor 1nck-associated protein 5NAP-5peripheral clock protein 2
Modification date2018052320180519
UniProtAcc

Q75T13

O14513

Ensembl transtripts involved in fusion geneENST00000354764, ENST00000409475, 
ENST00000409188, ENST00000485830, 
ENST00000409261, ENST00000409213, 
ENST00000405974, ENST00000317721, 
ENST00000473859, 
Fusion gene scores* DoF score4 X 4 X 4=649 X 8 X 4=288
# samples 49
** MAII scorelog2(4/64*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/288*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PGAP1 [Title/Abstract] AND NCKAP5 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDLUSCTCGA-21-1070-01APGAP1chr2

197791194

-NCKAP5chr2

133430878

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000354764ENST00000409261PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000354764ENST00000409213PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000354764ENST00000405974PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000354764ENST00000317721PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
5CDS-intronENST00000354764ENST00000473859PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000409475ENST00000409261PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000409475ENST00000409213PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000409475ENST00000405974PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
In-frameENST00000409475ENST00000317721PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
5CDS-intronENST00000409475ENST00000473859PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000409188ENST00000409261PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000409188ENST00000409213PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000409188ENST00000405974PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000409188ENST00000317721PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-intronENST00000409188ENST00000473859PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000485830ENST00000409261PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000485830ENST00000409213PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000485830ENST00000405974PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-3CDSENST00000485830ENST00000317721PGAP1chr2

197791194

-NCKAP5chr2

133430878

-
intron-intronENST00000485830ENST00000473859PGAP1chr2

197791194

-NCKAP5chr2

133430878

-

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FusionProtFeatures for PGAP1_NCKAP5


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PGAP1

Q75T13

NCKAP5

O14513

Involved in inositol deacylation of GPI-anchoredproteins. GPI inositol deacylation may important for efficienttransport of GPI-anchored proteins from the endoplasmic reticulumto the Golgi (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-1271_1149923Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-1201_1149593Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-12712_3249923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-12012_3249593TransmembraneHelical
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000405974-14161080_1130585591Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000405974-1416927_933585591Compositional biasNote=Poly-Pro
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409213-16181080_1130585591Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409213-1618927_933585591Compositional biasNote=Poly-Pro

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-12733_64149923Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127663_66849923Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127690_73349923Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127755_81749923Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127839_85349923Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127875_89349923Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127915_92249923Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-12033_64149593Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120663_66849593Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120690_73349593Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120755_81749593Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120839_85349593Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120875_89349593Topological domainCytoplasmic
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120915_92249593Topological domainLumenal
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127642_66249923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127669_68949923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127734_75449923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127818_83849923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127854_87449923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000354764-127894_91449923TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120642_66249593TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120669_68949593TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120734_75449593TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120818_83849593TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120854_87449593TransmembraneHelical
HgenePGAP1chr2:197791194chr2:133430878ENST00000409475-120894_91449593TransmembraneHelical
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000317721-161871_25319041910Coiled coilOntology_term=ECO:0000255
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000405974-141671_253585591Coiled coilOntology_term=ECO:0000255
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409213-161871_253585591Coiled coilOntology_term=ECO:0000255
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409261-182071_25319041910Coiled coilOntology_term=ECO:0000255
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000317721-16181080_113019041910Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000317721-1618331_38619041910Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000317721-1618927_93319041910Compositional biasNote=Poly-Pro
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000405974-1416331_386585591Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409213-1618331_386585591Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409261-18201080_113019041910Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409261-1820331_38619041910Compositional biasNote=Ser-rich
TgeneNCKAP5chr2:197791194chr2:133430878ENST00000409261-1820927_93319041910Compositional biasNote=Poly-Pro


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FusionGeneSequence for PGAP1_NCKAP5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000409261_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000409213_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000405974_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000317721_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000409261_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000409213_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000405974_chr2_133430878_-_54aa

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000317721_chr2_133430878_-_54aa


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000409261_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000409213_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000405974_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000317721_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000409261_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000409213_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000405974_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000317721_chr2_133430878_-_164nt
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGGGGCTGTGGGATGTCTTCTTC


* Fusion transcript sequences (Full-length transcript).
>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000409261_chr2_133430878_-_1767nt
CGGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGG
CGGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAAC
CCTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAG
ACAACTTGAAGAAACAAAAGACGATCCCGAGAATAGATTATCGAAAATTTCCCTAGAGTCATTCAATAAATTTAACAGCAATACTGTGAT
TTTATTAGAAAAAGAGAAGAACTCTCTGAACAAGGTTGAAGGACAGAAGGAAGAAAAAGAAAAAAATGAAGAGACATCTTTGAGTAGTTC
AGATAGGCCTGGGGTAGACAACTTGGAATCTTTGAGTGATTCTTTATATGATAGCTTCTCTTCCTGTGCCAGTCAAGGTTCAAATGATGT
ATAAAGGACATCTCTTCCCTTAGTGAGCTGGGACTGGAGCGCTTAAGAAATGATGGGTGGGGGGTGGGGGGTGCACCGCTTGATAGAGAT
AACAATAAACTATTGCAGTACCAGAGCCTTCCTTGTCAAATTCACAGCAGGCAACCCACCAGAGCTTATTTCTCTGACAGGGCAATAAAG
ATAGACTCCATTTATTGTGTTTCAAGAGGATTAAGCGTAAACACATCTATGATACAGAATCCTTAATTTTGCACTTTTTTTGAATATTTG
TACAGAAGTTGTAAATTTTTTGGAAGAGAAATTATATTTGTAGCAAAAAAAGACAGCAATAAATGGAATCAGTGCCATGCTCTTGAAATA
ATGTACTAAGTCTTAGAAGTTGATGATAATATATATTTTTTAAAATCCCAACTGAAGTTTTTGTGAAGTTCGTTGTCCTGGTCCTCAAAT
TGTTTGTGGGTACACTCTGTAAACCTACAACAGGGCCTGCCAAAAAATCGGAGGGTTCCTCCTCATCTCCATCTCACAAATCTCAATTTG
ATGGAAATGTTCATTTTAGTGTAATTTCAGATTCGTTGCCAGAGATTCAGGTGATAGTAATAAGTGTCATTCTGCTTCTGCTGAAAAATG
AAAAGGGTCCTGAAGTGTGGACACTGATTGGGAGTGTGACATTGTATCAGAAATGACCGAATTCTATTCCCAATACCAGTTTTTCCTTCC
AGACATTTCTTTAGATTGTCTTTTACTTAGTGCTTCTCTATGATCCTGAATATTATTTGATTTTTATCTTCTTGCTCTTTTTATTAAAAT
CTGGGCACTCTAAAAATGAAAACAAATTTCTATTTGCAATGTTCACTTTTAAAAATAAAATTAATGGTGCTACGAAGAATTCTTTTTAAT
ATCCTTTTTTTTCTACAAAGACTGTTTATATGTAAGGATAAATTCTATTTTAAAGGTTATGTGTATTTTTTCTAGATGTGAACTATTTAT
AATTACTTATGTACAGGAGCTTGTAAACTAGGCCCAATAGAAATATTTTTAGGATCTATATGGCTACTTTAGCACATAATTGTTTCTTTA
AAGAGTATTGTATGATCAGTGTTATTTGGTTAATTTGTGCAATTTGTTTTATTTTATCTTAAATGAAAATTATGTAAAATGTCCTTGTCT

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000409213_chr2_133430878_-_519nt
CGGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGG
CGGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAAC
CCTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAG
ACAACTTGAAGAAACAAAAGACGATCCCGAGAATAGATTATCGAAAATTTCCCTAGAGTCATTCAATAAATTTAACAGCAATACTGTGAT
TTTATTAGAAAAAGAGAAGAACTCTCTGAACAAGGTTGAAGGACAGAAGGAAGAAAAAGAAAAAAATGAAGAGACATCTTTGAGTAGTTC

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000405974_chr2_133430878_-_279nt
CGGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGG
CGGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAAC
CCTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAG

>In-frame_PGAP1_ENST00000354764_chr2_197791194_-_NCKAP5_ENST00000317721_chr2_133430878_-_279nt
CGGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGG
CGGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAAC
CCTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAG

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000409261_chr2_133430878_-_1766nt
GGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGGC
GGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACC
CTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAGA
CAACTTGAAGAAACAAAAGACGATCCCGAGAATAGATTATCGAAAATTTCCCTAGAGTCATTCAATAAATTTAACAGCAATACTGTGATT
TTATTAGAAAAAGAGAAGAACTCTCTGAACAAGGTTGAAGGACAGAAGGAAGAAAAAGAAAAAAATGAAGAGACATCTTTGAGTAGTTCA
GATAGGCCTGGGGTAGACAACTTGGAATCTTTGAGTGATTCTTTATATGATAGCTTCTCTTCCTGTGCCAGTCAAGGTTCAAATGATGTA
TAAAGGACATCTCTTCCCTTAGTGAGCTGGGACTGGAGCGCTTAAGAAATGATGGGTGGGGGGTGGGGGGTGCACCGCTTGATAGAGATA
ACAATAAACTATTGCAGTACCAGAGCCTTCCTTGTCAAATTCACAGCAGGCAACCCACCAGAGCTTATTTCTCTGACAGGGCAATAAAGA
TAGACTCCATTTATTGTGTTTCAAGAGGATTAAGCGTAAACACATCTATGATACAGAATCCTTAATTTTGCACTTTTTTTGAATATTTGT
ACAGAAGTTGTAAATTTTTTGGAAGAGAAATTATATTTGTAGCAAAAAAAGACAGCAATAAATGGAATCAGTGCCATGCTCTTGAAATAA
TGTACTAAGTCTTAGAAGTTGATGATAATATATATTTTTTAAAATCCCAACTGAAGTTTTTGTGAAGTTCGTTGTCCTGGTCCTCAAATT
GTTTGTGGGTACACTCTGTAAACCTACAACAGGGCCTGCCAAAAAATCGGAGGGTTCCTCCTCATCTCCATCTCACAAATCTCAATTTGA
TGGAAATGTTCATTTTAGTGTAATTTCAGATTCGTTGCCAGAGATTCAGGTGATAGTAATAAGTGTCATTCTGCTTCTGCTGAAAAATGA
AAAGGGTCCTGAAGTGTGGACACTGATTGGGAGTGTGACATTGTATCAGAAATGACCGAATTCTATTCCCAATACCAGTTTTTCCTTCCA
GACATTTCTTTAGATTGTCTTTTACTTAGTGCTTCTCTATGATCCTGAATATTATTTGATTTTTATCTTCTTGCTCTTTTTATTAAAATC
TGGGCACTCTAAAAATGAAAACAAATTTCTATTTGCAATGTTCACTTTTAAAAATAAAATTAATGGTGCTACGAAGAATTCTTTTTAATA
TCCTTTTTTTTCTACAAAGACTGTTTATATGTAAGGATAAATTCTATTTTAAAGGTTATGTGTATTTTTTCTAGATGTGAACTATTTATA
ATTACTTATGTACAGGAGCTTGTAAACTAGGCCCAATAGAAATATTTTTAGGATCTATATGGCTACTTTAGCACATAATTGTTTCTTTAA
AGAGTATTGTATGATCAGTGTTATTTGGTTAATTTGTGCAATTTGTTTTATTTTATCTTAAATGAAAATTATGTAAAATGTCCTTGTCTT

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000409213_chr2_133430878_-_518nt
GGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGGC
GGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACC
CTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAGA
CAACTTGAAGAAACAAAAGACGATCCCGAGAATAGATTATCGAAAATTTCCCTAGAGTCATTCAATAAATTTAACAGCAATACTGTGATT
TTATTAGAAAAAGAGAAGAACTCTCTGAACAAGGTTGAAGGACAGAAGGAAGAAAAAGAAAAAAATGAAGAGACATCTTTGAGTAGTTCA

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000405974_chr2_133430878_-_278nt
GGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGGC
GGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACC
CTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAGA

>In-frame_PGAP1_ENST00000409475_chr2_197791194_-_NCKAP5_ENST00000317721_chr2_133430878_-_278nt
GGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGGC
GGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACC
CTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAATTGAGA


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FusionGenePPI for PGAP1_NCKAP5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PGAP1SIRT3, MAP1LC3A, ITM2B, NRG1, MCOLN3, ATP1B4, BTNL8, ISLR, PLTP, HTR3C, PON2, SCGB1D1, TCTN2, UPK1A, NCEH1NCKAP5APC, VAV2, HECW2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PGAP1_NCKAP5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PGAP1_NCKAP5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneNCKAP5C0086132Depressive Symptoms1PSYGENET