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Fusion gene ID: 26772 |
FusionGeneSummary for PFN1_NAGK |
Fusion gene summary |
Fusion gene information | Fusion gene name: PFN1_NAGK | Fusion gene ID: 26772 | Hgene | Tgene | Gene symbol | PFN1 | NAGK | Gene ID | 5216 | 55577 |
Gene name | profilin 1 | N-acetylglucosamine kinase | |
Synonyms | ALS18 | GNK|HSA242910 | |
Cytomap | 17p13.2 | 2p13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | profilin-1epididymis tissue protein Li 184aprofilin I | N-acetyl-D-glucosamine kinaseglcNAc kinase | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P07737 | Q9UJ70 | |
Ensembl transtripts involved in fusion gene | ENST00000225655, ENST00000574872, | ENST00000455662, ENST00000418807, ENST00000443872, ENST00000443938, ENST00000244204, ENST00000428360, | |
Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 2 X 2 X 1=4 |
# samples | 3 | 2 | |
** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: PFN1 [Title/Abstract] AND NAGK [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PFN1 | GO:0030837 | negative regulation of actin filament polymerization | 7758455 |
Hgene | PFN1 | GO:0032781 | positive regulation of ATPase activity | 7758455 |
Hgene | PFN1 | GO:0050821 | protein stabilization | 18573880 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BQ334962 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000225655 | ENST00000455662 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-3UTR | ENST00000225655 | ENST00000418807 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-intron | ENST00000225655 | ENST00000443872 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-3UTR | ENST00000225655 | ENST00000443938 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-intron | ENST00000225655 | ENST00000244204 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-intron | ENST00000225655 | ENST00000428360 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-3UTR | ENST00000574872 | ENST00000455662 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-3UTR | ENST00000574872 | ENST00000418807 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-intron | ENST00000574872 | ENST00000443872 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-3UTR | ENST00000574872 | ENST00000443938 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-intron | ENST00000574872 | ENST00000244204 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
intron-intron | ENST00000574872 | ENST00000428360 | PFN1 | chr17 | 4849137 | - | NAGK | chr2 | 71305764 | + |
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FusionProtFeatures for PFN1_NAGK |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
PFN1 | NAGK |
Binds to actin and affects the structure of thecytoskeleton. At high concentrations, profilin prevents thepolymerization of actin, whereas it enhances it at lowconcentrations. By binding to PIP2, it inhibits the formation ofIP3 and DG. Inhibits androgen receptor (AR) and HTT aggregationand binding of G-actin is essential for its inhibition of AR.{ECO:0000269|PubMed:18573880}. | Converts endogenous N-acetylglucosamine (GlcNAc), amajor component of complex carbohydrates, from lysosomaldegradation or nutritional sources into GlcNAc 6-phosphate.Involved in the N-glycolylneuraminic acid (Neu5Gc) degradationpathway: although human is not able to catalyze formation ofNeu5Gc due to the inactive CMAHP enzyme, Neu5Gc is present in foodand must be degraded. Also has ManNAc kinase activity.{ECO:0000269|PubMed:22692205}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PFN1_NAGK |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PFN1_NAGK |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PFN1_NAGK |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | PFN1 | P07737 | DB11638 | Artenimol | Profilin-1 | small molecule | approved|investigational |
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RelatedDiseases for PFN1_NAGK |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PFN1 | C0022548 | Keloid | 1 | CTD_human |
Hgene | PFN1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | PFN1 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |
Hgene | PFN1 | C3553719 | AMYOTROPHIC LATERAL SCLEROSIS 18 | 1 | UNIPROT |
Tgene | NAGK | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | NAGK | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Tgene | NAGK | C0033578 | Prostatic Neoplasms | 1 | CTD_human |