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Fusion gene ID: 25868 |
FusionGeneSummary for PAM16_PITPNM3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PAM16_PITPNM3 | Fusion gene ID: 25868 | Hgene | Tgene | Gene symbol | PAM16 | PITPNM3 | Gene ID | 51025 | 83394 |
| Gene name | presequence translocase associated motor 16 | PITPNM family member 3 | |
| Synonyms | CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16 | ACKR6|CORD5|NIR1|RDGBA3 | |
| Cytomap | 16p13.3 | 17p13.2-p13.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | mitochondrial import inner membrane translocase subunit TIM16magmas-like proteinmitochondria associated protein involved in granulocyte macrophage colony stimulating factor signal transductionmitochondria-associated granulocyte macrophage CSF-signaling | membrane-associated phosphatidylinositol transfer protein 3NIR-1PITPnm 3PYK2 N-terminal domain-interacting receptor 1atypical chemokine receptor 6cone rod dystrophy 5phosphatidylinositol transfer protein, membrane-associated 3retinal degeneration B | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9Y3D7 | Q9BZ71 | |
| Ensembl transtripts involved in fusion gene | ENST00000577031, ENST00000318059, ENST00000573553, ENST00000575848, ENST00000571941, ENST00000576217, ENST00000575942, | ENST00000421306, ENST00000262483, ENST00000576664, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 1 X 1 X 1=1 |
| # samples | 2 | 1 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: PAM16 [Title/Abstract] AND PITPNM3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PAM16 | GO:0032780 | negative regulation of ATPase activity | 19564938|20053669 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | PCPG | TCGA-QR-A70I-01A | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000577031 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| Frame-shift | ENST00000577031 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| 5CDS-intron | ENST00000577031 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| Frame-shift | ENST00000318059 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| Frame-shift | ENST00000318059 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| 5CDS-intron | ENST00000318059 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-3CDS | ENST00000573553 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-3CDS | ENST00000573553 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-intron | ENST00000573553 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-3CDS | ENST00000575848 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-3CDS | ENST00000575848 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-intron | ENST00000575848 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-3CDS | ENST00000571941 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-3CDS | ENST00000571941 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| intron-intron | ENST00000571941 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| Frame-shift | ENST00000576217 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| Frame-shift | ENST00000576217 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| 5CDS-intron | ENST00000576217 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| 5UTR-3CDS | ENST00000575942 | ENST00000421306 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| 5UTR-3CDS | ENST00000575942 | ENST00000262483 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
| 5UTR-intron | ENST00000575942 | ENST00000576664 | PAM16 | chr16 | 4401233 | - | PITPNM3 | chr17 | 6387612 | - |
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FusionProtFeatures for PAM16_PITPNM3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PAM16 | PITPNM3 |
| Regulates ATP-dependent protein translocation into themitochondrial matrix. Inhibits DNAJC19 stimulation ofHSPA9/Mortalin ATPase activity. {ECO:0000269|PubMed:20053669}. | Catalyzes the transfer of phosphatidylinositol andphosphatidylcholine between membranes (in vitro) (By similarity).Binds calcium ions. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PAM16_PITPNM3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PAM16_PITPNM3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PAM16 | FEZ1, DNAJC19, TIMM17A, MRFAP1, GPM6A, CEP70, BLOC1S2, DNMT3B, PGRMC1, EIF3C, ARL6IP1, DNAJC15, TIMM17B, PAM16, SPACA1, TEX29, ANTXR1, ERGIC3, TIMM44, TMOD2, TMOD3, CCDC58, NDUFA4, COQ9, C15orf48, C2orf47, PTPMT1, PCDHA12, NPY2R, RANBP6, MME, MARC1, TFB2M, SLC25A29, TRIM25 | PITPNM3 | PTK2B, VAPA, VAPB |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PAM16_PITPNM3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PAM16_PITPNM3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PAM16 | C2750075 | Chondrodysplasia, Megarbane-Dagher-Melki Type | 1 | ORPHANET;UNIPROT |
| Tgene | PITPNM3 | C1832976 | Cone-Rod Dystrophy 5 | 1 | CTD_human;UNIPROT |
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