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Fusion gene ID: 25676 |
FusionGeneSummary for P4HA1_NODAL |
Fusion gene summary |
Fusion gene information | Fusion gene name: P4HA1_NODAL | Fusion gene ID: 25676 | Hgene | Tgene | Gene symbol | P4HA1 | NODAL | Gene ID | 5033 | 4838 |
Gene name | prolyl 4-hydroxylase subunit alpha 1 | nodal growth differentiation factor | |
Synonyms | P4HA | HTX5 | |
Cytomap | 10q22.1 | 10q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | prolyl 4-hydroxylase subunit alpha-1C-P4Halpha(I)collagen prolyl 4-hydroxylase alpha(I)procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide Iprocollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-1proly | nodal homolog | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P13674 | Q96S42 | |
Ensembl transtripts involved in fusion gene | ENST00000307116, ENST00000373008, ENST00000263556, ENST00000412021, ENST00000440381, ENST00000394890, | ENST00000287139, | |
Fusion gene scores | * DoF score | 7 X 4 X 5=140 | 3 X 1 X 3=9 |
# samples | 7 | 3 | |
** MAII score | log2(7/140*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: P4HA1 [Title/Abstract] AND NODAL [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | NODAL | GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 15150278 |
Tgene | NODAL | GO:0050679 | positive regulation of epithelial cell proliferation | 21656830 |
Tgene | NODAL | GO:0060766 | negative regulation of androgen receptor signaling pathway | 21656830 |
Tgene | NODAL | GO:1901164 | negative regulation of trophoblast cell migration | 21356369 |
Tgene | NODAL | GO:1901383 | negative regulation of chorionic trophoblast cell proliferation | 15150278 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | PRAD | TCGA-EJ-5532-01A | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000307116 | ENST00000287139 | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
Frame-shift | ENST00000373008 | ENST00000287139 | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
Frame-shift | ENST00000263556 | ENST00000287139 | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
Frame-shift | ENST00000412021 | ENST00000287139 | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
Frame-shift | ENST00000440381 | ENST00000287139 | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
Frame-shift | ENST00000394890 | ENST00000287139 | P4HA1 | chr10 | 74828604 | - | NODAL | chr10 | 72195739 | - |
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FusionProtFeatures for P4HA1_NODAL |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
P4HA1 | NODAL |
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and otherproteins. | Essential for mesoderm formation and axial patterningduring embryonic development. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for P4HA1_NODAL |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for P4HA1_NODAL |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
P4HA1 | MYC, SMN1, IRF7, CDK9, ELAVL1, CUL3, UBL4A, CFTR, HDAC10, WWOX, IRS4, AATK, TSC22D4, EVPL, P4HB, PSMD5, TCTN3, TCTN1, RBM8A, RNF41, CPSF3, SLAIN2, UBA5, FIP1L1, PARD6B, ZNF526, GLI1, FOXA3, FOXG1, FOXL2, FOXP3, FOXS1, CTDSP2, COLQ | NODAL | RSPRY1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for P4HA1_NODAL |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | P4HA1 | P13674 | DB01275 | Hydralazine | Prolyl 4-hydroxylase subunit alpha-1 | small molecule | approved |
Hgene | P4HA1 | P13674 | DB00126 | Vitamin C | Prolyl 4-hydroxylase subunit alpha-1 | small molecule | approved|nutraceutical |
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RelatedDiseases for P4HA1_NODAL |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | NODAL | C3495537 | Heterotaxy, Visceral, 5, Autosomal | 2 | CTD_human;UNIPROT |
Tgene | NODAL | C0079541 | Holoprosencephaly | 1 | CTD_human |