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Fusion gene ID: 25645 |
FusionGeneSummary for OXNAD1_LRRTM4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: OXNAD1_LRRTM4 | Fusion gene ID: 25645 | Hgene | Tgene | Gene symbol | OXNAD1 | LRRTM4 | Gene ID | 92106 | 80059 |
Gene name | oxidoreductase NAD binding domain containing 1 | leucine rich repeat transmembrane neuronal 4 | |
Synonyms | - | - | |
Cytomap | 3p25.1-p24.3 | 2p12 | |
Type of gene | protein-coding | protein-coding | |
Description | oxidoreductase NAD-binding domain-containing protein 1 | leucine-rich repeat transmembrane neuronal protein 4 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q96HP4 | Q86VH4 | |
Ensembl transtripts involved in fusion gene | ENST00000606098, ENST00000285083, ENST00000605932, ENST00000435829, ENST00000544043, ENST00000607329, | ENST00000409911, ENST00000409884, ENST00000409093, ENST00000409088, ENST00000409282, ENST00000491242, | |
Fusion gene scores | * DoF score | 2 X 3 X 2=12 | 1 X 1 X 1=1 |
# samples | 3 | 1 | |
** MAII score | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: OXNAD1 [Title/Abstract] AND LRRTM4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-AR-A0TZ-01A | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000606098 | ENST00000409911 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000606098 | ENST00000409884 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
In-frame | ENST00000606098 | ENST00000409093 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000606098 | ENST00000409088 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000606098 | ENST00000409282 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000606098 | ENST00000491242 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000285083 | ENST00000409911 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000285083 | ENST00000409884 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
In-frame | ENST00000285083 | ENST00000409093 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000285083 | ENST00000409088 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000285083 | ENST00000409282 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000285083 | ENST00000491242 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000605932 | ENST00000409911 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000605932 | ENST00000409884 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
In-frame | ENST00000605932 | ENST00000409093 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000605932 | ENST00000409088 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000605932 | ENST00000409282 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000605932 | ENST00000491242 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000435829 | ENST00000409911 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000435829 | ENST00000409884 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
In-frame | ENST00000435829 | ENST00000409093 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000435829 | ENST00000409088 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000435829 | ENST00000409282 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000435829 | ENST00000491242 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000544043 | ENST00000409911 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
Frame-shift | ENST00000544043 | ENST00000409884 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
In-frame | ENST00000544043 | ENST00000409093 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000544043 | ENST00000409088 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000544043 | ENST00000409282 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
5CDS-intron | ENST00000544043 | ENST00000491242 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
intron-3CDS | ENST00000607329 | ENST00000409911 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
intron-3CDS | ENST00000607329 | ENST00000409884 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
intron-3CDS | ENST00000607329 | ENST00000409093 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
intron-intron | ENST00000607329 | ENST00000409088 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
intron-intron | ENST00000607329 | ENST00000409282 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
intron-intron | ENST00000607329 | ENST00000491242 | OXNAD1 | chr3 | 16327955 | + | LRRTM4 | chr2 | 76976042 | - |
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FusionProtFeatures for OXNAD1_LRRTM4 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
OXNAD1 | LRRTM4 |
May play a role in the development and maintenance ofthe vertebrate nervous system. Exhibits strong synaptogenicactivity, restricted to excitatory presynaptic differentiation (Bysimilarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for OXNAD1_LRRTM4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_OXNAD1_ENST00000606098_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_170aa MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAASESPSVKSLRLLVADQDF >In-frame_OXNAD1_ENST00000285083_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_170aa MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAASESPSVKSLRLLVADQDF >In-frame_OXNAD1_ENST00000605932_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_170aa MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAASESPSVKSLRLLVADQDF >In-frame_OXNAD1_ENST00000435829_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_188aa MTPKISWTSKFSVCPESAMACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAA SESPSVKSLRLLVADQDFSFKAGQXCHTTXSPCHITAMTSLXSGTARPTSHSMSPRAMRQCLQSRTKAPAWSWAETTASSPPSPGRQHRP >In-frame_OXNAD1_ENST00000544043_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_188aa MTPKISWTSKFSVCPESAMACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAA SESPSVKSLRLLVADQDFSFKAGQXCHTTXSPCHITAMTSLXSGTARPTSHSMSPRAMRQCLQSRTKAPAWSWAETTASSPPSPGRQHRP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_OXNAD1_ENST00000606098_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_512nt ATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTC AGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGG GAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTT TCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCC ACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCCGAGACCACAGCT >In-frame_OXNAD1_ENST00000285083_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_512nt ATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTC AGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGG GAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTT TCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCC ACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCCGAGACCACAGCT >In-frame_OXNAD1_ENST00000605932_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_512nt ATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTC AGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGG GAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTT TCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCC ACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCCGAGACCACAGCT >In-frame_OXNAD1_ENST00000435829_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_566nt ATGACTCCTAAAATCTCGTGGACTTCTAAGTTTTCTGTTTGCCCAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTG CGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCATAATG AAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCC AGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCACATGA AGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGAGACAG TGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCA >In-frame_OXNAD1_ENST00000544043_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_566nt ATGACTCCTAAAATCTCGTGGACTTCTAAGTTTTCTGTTTGCCCAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTG CGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCATAATG AAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCC AGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCACATGA AGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGAGACAG TGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_OXNAD1_ENST00000606098_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_847nt AGCCCAGGGCGACGGTCAGCTTGTTAATTCCTGGCTGCAGGAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTG CTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTG GACTTCTAAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCG TCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACT GCAAGTGTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTT GTTGCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGA TCGGGTACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGC TGGGCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCATCTACCTAGAGAGAATTGCAAACTAACGCTGAAGCC AACTCCTCACTGGGGAGCTCCATGGGGGGGAGGGAGGGCCTTCATCTTAAAGGAGAATGGGTGTCCACAATCGCGCAATCGAGCAAGCTC >In-frame_OXNAD1_ENST00000285083_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_1114nt CTGGGACCGCGGAGTATTCCAGGCGCCTGCAACTAAACGTGGCCGGGTCTGCAAGCTAGGTGCCAGCGGGGAAAGTTTCCCTGCTTCTTA TCGTCTGCTTTAACGCCTTAAATAGCCCGCTGAAGGCTGCAGCAGGTGCTAGGTAGCAGCCTCCCGGCCCTCGGGAAAGGCGGGGTGGGG AGGCGAGAGCAGCTTAGCCTCCTCGACCTCCCTTCCTGGTGACGGACGAACAGTTCCCGTAGAATTTCGCTTCACCGAGTGACCTTGAGC CCAGGGCGACGGTCAGCTTGTTAATTCCTGGCTGCAGGAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTG TACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGAC TTCTAAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCA CTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCA AGTGTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTT GCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCG GGTACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGG GCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCATCTACCTAGAGAGAATTGCAAACTAACGCTGAAGCCAAC TCCTCACTGGGGAGCTCCATGGGGGGGAGGGAGGGCCTTCATCTTAAAGGAGAATGGGTGTCCACAATCGCGCAATCGAGCAAGCTCATC >In-frame_OXNAD1_ENST00000605932_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_1111nt GGACCGCGGAGTATTCCAGGCGCCTGCAACTAAACGTGGCCGGGTCTGCAAGCTAGGTGCCAGCGGGGAAAGTTTCCCTGCTTCTTATCG TCTGCTTTAACGCCTTAAATAGCCCGCTGAAGGCTGCAGCAGGTGCTAGGTAGCAGCCTCCCGGCCCTCGGGAAAGGCGGGGTGGGGAGG CGAGAGCAGCTTAGCCTCCTCGACCTCCCTTCCTGGTGACGGACGAACAGTTCCCGTAGAATTTCGCTTCACCGAGTGACCTTGAGCCCA GGGCGACGGTCAGCTTGTTAATTCCTGGCTGCAGGAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTAC ATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTC TAAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTG AGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGT GTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCT GATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGT ACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCC GAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCATCTACCTAGAGAGAATTGCAAACTAACGCTGAAGCCAACTCC TCACTGGGGAGCTCCATGGGGGGGAGGGAGGGCCTTCATCTTAAAGGAGAATGGGTGTCCACAATCGCGCAATCGAGCAAGCTCATCGTT >In-frame_OXNAD1_ENST00000435829_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_1119nt GAGTATTCCAGGCGCCTGCAACTAAACGTGGCCGGGTCTGCAAGCTAGGTGCCAGCGGGGAAAGTTTCCCTGCTTCTTATCGTCTGCTTT AACGCCTTAAATAGCCCGCTGAAGGCTGCAGCAGGTGCTAGGTAGCAGCCTCCCGGCCCTCGGGAAAGGCGGGGTGGGGAGGCGAGAGCA GCTTAGCCTCCTCGACCTCCCTTCCTGGTGACGGACGAACAGTTCCCGTAGAATTTCGCTTCACCGAGTGACCTTGAGCCCAGGGCGACG GTCAGCTTGTTAATTCCTGGCTGCAGGAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTACATCCAAAA GTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTCTAAGTTTT CTGTTTGCCCAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTG CGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAA CTGCAAGTGTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGC TTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGT GATCGGGTACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGA GCTGGGCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCATCTACCTAGAGAGAATTGCAAACTAACGCTGAAG CCAACTCCTCACTGGGGAGCTCCATGGGGGGGAGGGAGGGCCTTCATCTTAAAGGAGAATGGGTGTCCACAATCGCGCAATCGAGCAAGC >In-frame_OXNAD1_ENST00000544043_chr3_16327955_+_LRRTM4_ENST00000409093_chr2_76976042_-_708nt ACTTAATGACTCCTAAAATCTCGTGGACTTCTAAGTTTTCTGTTTGCCCAGAAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGT TGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGCA TAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAGATTGTGTCAGCAGCTAAGGTGTGTGGAG CTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTGATGCCACACCA CATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCCACCAGCCACTCCATGTCACCAAGGGCTATGA GACAGTGTCTCCAGAGCAGGACGAAAGCCCCGGCCTGGAGCTGGGCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACC GGCCATCTACCTAGAGAGAATTGCAAACTAACGCTGAAGCCAACTCCTCACTGGGGAGCTCCATGGGGGGGAGGGAGGGCCTTCATCTTA |
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FusionGenePPI for OXNAD1_LRRTM4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
OXNAD1 | HSPD1, SRR, DENR, PROSC, YBEY, MRPL12, MMAB | LRRTM4 | PILRA, EGFR |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for OXNAD1_LRRTM4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for OXNAD1_LRRTM4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |