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Fusion gene ID: 24583 |
FusionGeneSummary for NOMO3_TFAP4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: NOMO3_TFAP4 | Fusion gene ID: 24583 | Hgene | Tgene | Gene symbol | NOMO3 | TFAP4 | Gene ID | 408050 | 7023 |
Gene name | NODAL modulator 3 | transcription factor AP-4 | |
Synonyms | Nomo | AP-4|bHLHc41 | |
Cytomap | 16p13.11 | 16p13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | nodal modulator 3pM5 protein 3pM5 protein, middle copy | transcription factor AP-4activating enhancer-binding protein 4class C basic helix-loop-helix protein 41transcription factor AP-4 (activating enhancer binding protein 4) | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P69849 | Q01664 | |
Ensembl transtripts involved in fusion gene | ENST00000399336, ENST00000263012, ENST00000538468, ENST00000572932, | ENST00000204517, | |
Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 3 X 2 X 3=18 |
# samples | 3 | 3 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: NOMO3 [Title/Abstract] AND TFAP4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | TFAP4 | GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator | 18818310 |
Tgene | TFAP4 | GO:0043065 | positive regulation of apoptotic process | 18818310 |
Tgene | TFAP4 | GO:0043392 | negative regulation of DNA binding | 7933101|16540471 |
Tgene | TFAP4 | GO:0043922 | negative regulation by host of viral transcription | 14645924|16540471 |
Tgene | TFAP4 | GO:0043923 | positive regulation by host of viral transcription | 2833704 |
Tgene | TFAP4 | GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity | 18818310 |
Tgene | TFAP4 | GO:0045892 | negative regulation of transcription, DNA-templated | 9931457|16924111|19505873 |
Tgene | TFAP4 | GO:0065003 | protein-containing complex assembly | 19505873 |
Tgene | TFAP4 | GO:1901990 | regulation of mitotic cell cycle phase transition | 18818310 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-S3-AA0Z-01A | NOMO3 | chr16 | 16350015 | + | TFAP4 | chr16 | 4312702 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000399336 | ENST00000204517 | NOMO3 | chr16 | 16350015 | + | TFAP4 | chr16 | 4312702 | - |
In-frame | ENST00000263012 | ENST00000204517 | NOMO3 | chr16 | 16350015 | + | TFAP4 | chr16 | 4312702 | - |
In-frame | ENST00000538468 | ENST00000204517 | NOMO3 | chr16 | 16350015 | + | TFAP4 | chr16 | 4312702 | - |
intron-3CDS | ENST00000572932 | ENST00000204517 | NOMO3 | chr16 | 16350015 | + | TFAP4 | chr16 | 4312702 | - |
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FusionProtFeatures for NOMO3_TFAP4 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
NOMO3 | TFAP4 |
May antagonize Nodal signaling. {ECO:0000250}. | Transcription factor that activates both viral andcellular genes by binding to the symmetrical DNA sequence 5'-CAGCTG-3'. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >TFAP4 | chr16:16350015 | chr16:4312702 | ENST00000204517 | - | 0 | 7 | 193_222 | 29 | 339 | Compositional bias | Note=Gln-rich |
Tgene | >TFAP4 | chr16:16350015 | chr16:4312702 | ENST00000204517 | - | 0 | 7 | 225_244 | 29 | 339 | Compositional bias | Note=Pro-rich |
Tgene | >TFAP4 | chr16:16350015 | chr16:4312702 | ENST00000204517 | - | 0 | 7 | 48_99 | 29 | 339 | Domain | bHLH |
Tgene | >TFAP4 | chr16:16350015 | chr16:4312702 | ENST00000204517 | - | 0 | 7 | 100_120 | 29 | 339 | Region | Note=Leucine-zipper 1 |
Tgene | >TFAP4 | chr16:16350015 | chr16:4312702 | ENST00000204517 | - | 0 | 7 | 151_179 | 29 | 339 | Region | Note=Leucine-zipper 2 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >NOMO3 | chr16:16350015 | chr16:4312702 | ENST00000399336 | + | 11 | 31 | 1177_1222 | 406 | 1223 | Topological domain | Cytoplasmic |
Hgene | >NOMO3 | chr16:16350015 | chr16:4312702 | ENST00000399336 | + | 11 | 31 | 32_1155 | 406 | 1223 | Topological domain | Extracellular |
Hgene | >NOMO3 | chr16:16350015 | chr16:4312702 | ENST00000399336 | + | 11 | 31 | 1156_1176 | 406 | 1223 | Transmembrane | Helical |
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FusionGeneSequence for NOMO3_TFAP4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_NOMO3_ENST00000399336_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_716aa MLVGQGAGPLGPAVVTAAVVLLLSGVGPAHGSEDIVVGCGGFVKSDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPLYDKGDFIL KIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVLSKGQPLGPAGVQVSLRNTGTEAKIQSTVTQPGGKFAFFKVLPGD YEILATHPTWALKEASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCY TVSREDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLDFTVEHDSLKIEPVFHVMGFSVTGRVLNGPEGDGVPEAVVTLNNQIKVKTK ADGSFRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQLADIVATGLANIPLTPETQRDQERRIRREIANSNERRRMQSINAGFQSLKT LIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLD KERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPPSHHINVVTM >In-frame_NOMO3_ENST00000263012_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_716aa MLVGQGAGPLGPAVVTAAVVLLLSGVGPAHGSEDIVVGCGGFVKSDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPLYDKGDFIL KIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVLSKGQPLGPAGVQVSLRNTGTEAKIQSTVTQPGGKFAFFKVLPGD YEILATHPTWALKEASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCY TVSREDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLDFTVEHDSLKIEPVFHVMGFSVTGRVLNGPEGDGVPEAVVTLNNQIKVKTK ADGSFRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQLADIVATGLANIPLTPETQRDQERRIRREIANSNERRRMQSINAGFQSLKT LIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLD KERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPPSHHINVVTM >In-frame_NOMO3_ENST00000538468_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_549aa MARFAFFKVLPGDYEILATHPTWALKEASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGCNVSPVPG FQPQDESLVYLCYTVSREDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLDFTVEHDSLKIEPVFHVMGFSVTGRVLNGPEGDGVPEA VVTLNNQIKVKTKADGSFRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQLADIVATGLANIPLTPETQRDQERRIRREIANSNERRR MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAED LRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAP PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKPVRSCPEAPTSDTASDSEASDSDAMDQSREE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_NOMO3_ENST00000399336_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_2148nt ATGCTGGTGGGCCAGGGCGCGGGGCCGCTGGGGCCCGCGGTGGTCACCGCCGCGGTGGTGCTGCTGCTGAGCGGCGTGGGGCCGGCGCAC GGCTCGGAGGACATCGTGGTGGGCTGCGGTGGCTTCGTCAAGTCGGACGTGGAGATCAACTACTCTCTCATCGAGATAAAGCTGTACACC AAGCATGGGACTTTGAAATACCAGACAGACTGTGCCCCTAATAATGGTTACTTTATGATCCCTTTGTATGATAAGGGGGATTTCATTCTG AAGATTGAGCCTCCCCTAGGGTGGAGTTTTGAGCCGACGACCGTGGAGCTCCATGTGGATGGAGTCAGTGACATCTGCACAAAGGGTGGG GACATCAACTTTGTCTTCACTGGGTTCTCTGTGAATGGCAAGGTCCTCAGCAAAGGGCAGCCCCTGGGTCCTGCGGGAGTTCAGGTGTCT CTGAGAAACACTGGGACCGAAGCAAAGATCCAGTCCACAGTTACACAGCCTGGCGGAAAGTTTGCATTTTTTAAAGTTCTGCCTGGAGAT TATGAAATCCTCGCAACTCATCCAACCTGGGCGTTGAAAGAGGCAAGCACCACAGTGCGTGTAACCAACTCCAATGCCAATGCGGCCAGT CCCCTCATAGTTGCTGGCTACAATGTGTCTGGCTCTGTCCGAAGTGATGGGGAGCCCATGAAAGGCGTGAAGTTTCTTCTCTTTTCTTCT TTAGTAACTAAAGAGGATGTCCTGGGCTGCAATGTCTCACCAGTGCCTGGGTTCCAGCCCCAAGACGAGAGTCTGGTGTATTTGTGCTAC ACGGTCTCCAGAGAAGATGGCTCGTTCTCTTTCTATTCCTTGCCAAGTGGGGGCTACACTGTGATTCCGTTCTATCGAGGGGAGAGGATT ACCTTTGATGTGGCGCCTTCCAGACTTGACTTCACAGTGGAGCATGACAGCTTGAAAATCGAGCCCGTGTTCCACGTCATGGGATTCTCC GTCACCGGGAGGGTCTTGAACGGACCCGAAGGAGATGGTGTTCCAGAAGCAGTAGTCACCCTGAATAACCAAATCAAAGTTAAAACAAAA GCTGATGGCTCATTCCGCCTTGAGAACATAACCACAGGGACATACACCATCCATGCTCAGAAAGAGCACCTCTACTTTGAAACGGTCACC ATCAAAATTGCACCAAACACACCTCAGCTGGCTGACATTGTTGCAACAGGCCTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGAC CAGGAGCGGCGGATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGATTCCAGTCCCTCAAGACC CTCATCCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCCGAGTACATCTTCTCCCTGGAGCAGGAGAAG ACCAGGCTCTTGCAGCAGAACACACAGCTCAAGCGCTTCATCCAGGAGCTGAGCGGCTCGTCCCCCAAGCGACGGCGGGCAGAGGACAAG GACGAAGGCATAGGCTCCCCGGACATCTGGGAGGACGAGAAGGCGGAGGACCTGCGGCGGGAGATGATTGAGCTGCGGCAGCAGCTGGAC AAGGAGCGCTCGGTGCGCATGATGCTGGAGGAGCAGGTGCGCTCGCTGGAGGCCCACATGTACCCGGAAAAGCTCAAGGTGATTGCGCAG CAGGTGCAGCTGCAGCAGCAGCAGGAACAGGTGAGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGCAGCTGCGGACCCAGCTT CTGCCCCCTCCGGCCCCCACCCACCACCCCACGGTGATCGTGCCAGCACCGCCTCCTCCTCCCTCCCACCACATCAATGTCGTCACCATG GGCCCCTCCTCGGTCATCAACTCTGTTTCCACATCCCGGCAAAATCTGGACACCATCGTGCAGGCAATCCAGCACATCGAGGGCACCCAG GAAAAGCAGGAGCTGGAGGAGGAGCAGCGGCGAGCTGTCATCGTGAAGCCTGTCCGCAGCTGCCCGGAGGCCCCCACCTCTGACACCGCC >In-frame_NOMO3_ENST00000263012_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_2148nt ATGCTGGTGGGCCAGGGCGCGGGGCCGCTGGGGCCCGCGGTGGTCACCGCCGCGGTGGTGCTGCTGCTGAGCGGCGTGGGGCCGGCGCAC GGCTCGGAGGACATCGTGGTGGGCTGCGGTGGCTTCGTCAAGTCGGACGTGGAGATCAACTACTCTCTCATCGAGATAAAGCTGTACACC AAGCATGGGACTTTGAAATACCAGACAGACTGTGCCCCTAATAATGGTTACTTTATGATCCCTTTGTATGATAAGGGGGATTTCATTCTG AAGATTGAGCCTCCCCTAGGGTGGAGTTTTGAGCCGACGACCGTGGAGCTCCATGTGGATGGAGTCAGTGACATCTGCACAAAGGGTGGG GACATCAACTTTGTCTTCACTGGGTTCTCTGTGAATGGCAAGGTCCTCAGCAAAGGGCAGCCCCTGGGTCCTGCGGGAGTTCAGGTGTCT CTGAGAAACACTGGGACCGAAGCAAAGATCCAGTCCACAGTTACACAGCCTGGCGGAAAGTTTGCATTTTTTAAAGTTCTGCCTGGAGAT TATGAAATCCTCGCAACTCATCCAACCTGGGCGTTGAAAGAGGCAAGCACCACAGTGCGTGTAACCAACTCCAATGCCAATGCGGCCAGT CCCCTCATAGTTGCTGGCTACAATGTGTCTGGCTCTGTCCGAAGTGATGGGGAGCCCATGAAAGGCGTGAAGTTTCTTCTCTTTTCTTCT TTAGTAACTAAAGAGGATGTCCTGGGCTGCAATGTCTCACCAGTGCCTGGGTTCCAGCCCCAAGACGAGAGTCTGGTGTATTTGTGCTAC ACGGTCTCCAGAGAAGATGGCTCGTTCTCTTTCTATTCCTTGCCAAGTGGGGGCTACACTGTGATTCCGTTCTATCGAGGGGAGAGGATT ACCTTTGATGTGGCGCCTTCCAGACTTGACTTCACAGTGGAGCATGACAGCTTGAAAATCGAGCCCGTGTTCCACGTCATGGGATTCTCC GTCACCGGGAGGGTCTTGAACGGACCCGAAGGAGATGGTGTTCCAGAAGCAGTAGTCACCCTGAATAACCAAATCAAAGTTAAAACAAAA GCTGATGGCTCATTCCGCCTTGAGAACATAACCACAGGGACATACACCATCCATGCTCAGAAAGAGCACCTCTACTTTGAAACGGTCACC ATCAAAATTGCACCAAACACACCTCAGCTGGCTGACATTGTTGCAACAGGCCTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGAC CAGGAGCGGCGGATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGATTCCAGTCCCTCAAGACC CTCATCCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCCGAGTACATCTTCTCCCTGGAGCAGGAGAAG ACCAGGCTCTTGCAGCAGAACACACAGCTCAAGCGCTTCATCCAGGAGCTGAGCGGCTCGTCCCCCAAGCGACGGCGGGCAGAGGACAAG GACGAAGGCATAGGCTCCCCGGACATCTGGGAGGACGAGAAGGCGGAGGACCTGCGGCGGGAGATGATTGAGCTGCGGCAGCAGCTGGAC AAGGAGCGCTCGGTGCGCATGATGCTGGAGGAGCAGGTGCGCTCGCTGGAGGCCCACATGTACCCGGAAAAGCTCAAGGTGATTGCGCAG CAGGTGCAGCTGCAGCAGCAGCAGGAACAGGTGAGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGCAGCTGCGGACCCAGCTT CTGCCCCCTCCGGCCCCCACCCACCACCCCACGGTGATCGTGCCAGCACCGCCTCCTCCTCCCTCCCACCACATCAATGTCGTCACCATG GGCCCCTCCTCGGTCATCAACTCTGTTTCCACATCCCGGCAAAATCTGGACACCATCGTGCAGGCAATCCAGCACATCGAGGGCACCCAG GAAAAGCAGGAGCTGGAGGAGGAGCAGCGGCGAGCTGTCATCGTGAAGCCTGTCCGCAGCTGCCCGGAGGCCCCCACCTCTGACACCGCC >In-frame_NOMO3_ENST00000538468_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_1647nt ATGGCAAGGTTTGCATTTTTTAAAGTTCTGCCTGGAGATTATGAAATCCTCGCAACTCATCCAACCTGGGCGTTGAAAGAGGCAAGCACC ACAGTGCGTGTAACCAACTCCAATGCCAATGCGGCCAGTCCCCTCATAGTTGCTGGCTACAATGTGTCTGGCTCTGTCCGAAGTGATGGG GAGCCCATGAAAGGCGTGAAGTTTCTTCTCTTTTCTTCTTTAGTAACTAAAGAGGATGTCCTGGGCTGCAATGTCTCACCAGTGCCTGGG TTCCAGCCCCAAGACGAGAGTCTGGTGTATTTGTGCTACACGGTCTCCAGAGAAGATGGCTCGTTCTCTTTCTATTCCTTGCCAAGTGGG GGCTACACTGTGATTCCGTTCTATCGAGGGGAGAGGATTACCTTTGATGTGGCGCCTTCCAGACTTGACTTCACAGTGGAGCATGACAGC TTGAAAATCGAGCCCGTGTTCCACGTCATGGGATTCTCCGTCACCGGGAGGGTCTTGAACGGACCCGAAGGAGATGGTGTTCCAGAAGCA GTAGTCACCCTGAATAACCAAATCAAAGTTAAAACAAAAGCTGATGGCTCATTCCGCCTTGAGAACATAACCACAGGGACATACACCATC CATGCTCAGAAAGAGCACCTCTACTTTGAAACGGTCACCATCAAAATTGCACCAAACACACCTCAGCTGGCTGACATTGTTGCAACAGGC CTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGACCAGGAGCGGCGGATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGC ATGCAGAGCATCAACGCGGGATTCCAGTCCCTCAAGACCCTCATCCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAG CAGACAGCCGAGTACATCTTCTCCCTGGAGCAGGAGAAGACCAGGCTCTTGCAGCAGAACACACAGCTCAAGCGCTTCATCCAGGAGCTG AGCGGCTCGTCCCCCAAGCGACGGCGGGCAGAGGACAAGGACGAAGGCATAGGCTCCCCGGACATCTGGGAGGACGAGAAGGCGGAGGAC CTGCGGCGGGAGATGATTGAGCTGCGGCAGCAGCTGGACAAGGAGCGCTCGGTGCGCATGATGCTGGAGGAGCAGGTGCGCTCGCTGGAG GCCCACATGTACCCGGAAAAGCTCAAGGTGATTGCGCAGCAGGTGCAGCTGCAGCAGCAGCAGGAACAGGTGAGGCTGCTGCACCAGGAG AAGCTGGAGCGGGAACAGCAGCAGCTGCGGACCCAGCTTCTGCCCCCTCCGGCCCCCACCCACCACCCCACGGTGATCGTGCCAGCACCG CCTCCTCCTCCCTCCCACCACATCAATGTCGTCACCATGGGCCCCTCCTCGGTCATCAACTCTGTTTCCACATCCCGGCAAAATCTGGAC ACCATCGTGCAGGCAATCCAGCACATCGAGGGCACCCAGGAAAAGCAGGAGCTGGAGGAGGAGCAGCGGCGAGCTGTCATCGTGAAGCCT GTCCGCAGCTGCCCGGAGGCCCCCACCTCTGACACCGCCTCCGACTCCGAGGCCTCAGACAGTGACGCCATGGACCAGAGCCGGGAGGAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_NOMO3_ENST00000399336_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_3189nt CTGGGGCTGTGACCGTGGGGTCGAAGCGCGCGTGCGCGGCGGCGGCTGGCGGCGGCGGTGGGGCGGGGCCTGGGCTGTCAGCCGGCCTAG GAGGAGGAAGGAGCCTGCGGCGTGCAGTGTGAGGGGCGGGACCCGGCTGCCGGCGGTGGGTCTAGCTGGGGGAGGTCGGGCCATGCTGGT GGGCCAGGGCGCGGGGCCGCTGGGGCCCGCGGTGGTCACCGCCGCGGTGGTGCTGCTGCTGAGCGGCGTGGGGCCGGCGCACGGCTCGGA GGACATCGTGGTGGGCTGCGGTGGCTTCGTCAAGTCGGACGTGGAGATCAACTACTCTCTCATCGAGATAAAGCTGTACACCAAGCATGG GACTTTGAAATACCAGACAGACTGTGCCCCTAATAATGGTTACTTTATGATCCCTTTGTATGATAAGGGGGATTTCATTCTGAAGATTGA GCCTCCCCTAGGGTGGAGTTTTGAGCCGACGACCGTGGAGCTCCATGTGGATGGAGTCAGTGACATCTGCACAAAGGGTGGGGACATCAA CTTTGTCTTCACTGGGTTCTCTGTGAATGGCAAGGTCCTCAGCAAAGGGCAGCCCCTGGGTCCTGCGGGAGTTCAGGTGTCTCTGAGAAA CACTGGGACCGAAGCAAAGATCCAGTCCACAGTTACACAGCCTGGCGGAAAGTTTGCATTTTTTAAAGTTCTGCCTGGAGATTATGAAAT CCTCGCAACTCATCCAACCTGGGCGTTGAAAGAGGCAAGCACCACAGTGCGTGTAACCAACTCCAATGCCAATGCGGCCAGTCCCCTCAT AGTTGCTGGCTACAATGTGTCTGGCTCTGTCCGAAGTGATGGGGAGCCCATGAAAGGCGTGAAGTTTCTTCTCTTTTCTTCTTTAGTAAC TAAAGAGGATGTCCTGGGCTGCAATGTCTCACCAGTGCCTGGGTTCCAGCCCCAAGACGAGAGTCTGGTGTATTTGTGCTACACGGTCTC CAGAGAAGATGGCTCGTTCTCTTTCTATTCCTTGCCAAGTGGGGGCTACACTGTGATTCCGTTCTATCGAGGGGAGAGGATTACCTTTGA TGTGGCGCCTTCCAGACTTGACTTCACAGTGGAGCATGACAGCTTGAAAATCGAGCCCGTGTTCCACGTCATGGGATTCTCCGTCACCGG GAGGGTCTTGAACGGACCCGAAGGAGATGGTGTTCCAGAAGCAGTAGTCACCCTGAATAACCAAATCAAAGTTAAAACAAAAGCTGATGG CTCATTCCGCCTTGAGAACATAACCACAGGGACATACACCATCCATGCTCAGAAAGAGCACCTCTACTTTGAAACGGTCACCATCAAAAT TGCACCAAACACACCTCAGCTGGCTGACATTGTTGCAACAGGCCTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGACCAGGAGCG GCGGATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGATTCCAGTCCCTCAAGACCCTCATCCC CCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCCGAGTACATCTTCTCCCTGGAGCAGGAGAAGACCAGGCT CTTGCAGCAGAACACACAGCTCAAGCGCTTCATCCAGGAGCTGAGCGGCTCGTCCCCCAAGCGACGGCGGGCAGAGGACAAGGACGAAGG CATAGGCTCCCCGGACATCTGGGAGGACGAGAAGGCGGAGGACCTGCGGCGGGAGATGATTGAGCTGCGGCAGCAGCTGGACAAGGAGCG CTCGGTGCGCATGATGCTGGAGGAGCAGGTGCGCTCGCTGGAGGCCCACATGTACCCGGAAAAGCTCAAGGTGATTGCGCAGCAGGTGCA GCTGCAGCAGCAGCAGGAACAGGTGAGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGCAGCTGCGGACCCAGCTTCTGCCCCC TCCGGCCCCCACCCACCACCCCACGGTGATCGTGCCAGCACCGCCTCCTCCTCCCTCCCACCACATCAATGTCGTCACCATGGGCCCCTC CTCGGTCATCAACTCTGTTTCCACATCCCGGCAAAATCTGGACACCATCGTGCAGGCAATCCAGCACATCGAGGGCACCCAGGAAAAGCA GGAGCTGGAGGAGGAGCAGCGGCGAGCTGTCATCGTGAAGCCTGTCCGCAGCTGCCCGGAGGCCCCCACCTCTGACACCGCCTCCGACTC CGAGGCCTCAGACAGTGACGCCATGGACCAGAGCCGGGAGGAGCCGTCGGGGGACGGGGAGCTTCCCTGACTACCCCCCCAGCCCTCCTC TCCCTTCTGGGGGCTGGAGGGAGCCGGGGCAGCCACAGGGAGAGACATGGGCGAATGAGTGAGAAATTTTTACAAAATTACGATGTCATT TGGGTCTCTTTTATGACCTCTTTTTCAATACTGTAAATCGACCTTTGAACGAAGCCACTCAACCCGAGGTCCCGGGGCTGGGGTGTCGCA GAGCGTGTGGGAGCATCGGCACCCCAGGGCGGGGCCTCGGCCCCGGGGGCTGGAGGAAGCTGACACGGAGATGCCTGGCCTCTCTCTGCC AAAAAGCATTTTTTCCTTTAAATATGTTTTTTAAGAACAGGGAAAATTAAACAAAACCCCAGGTTATTTCTTCCCTGCCCAGAGCCAGCC TGGGATTGTCAGCCTTCAATCCCCTTTCCTTCCTCTTTTTGGGTTTTCTTCTTTCTCCTTTAAGCACTTACATGGTTGGGGGTAAGACTA GGCTGGGGCATTCTGGGGGCCCGGAGGTCTCCGTTGCTTCTTGGTTGGGGTTTGCTGCTGCTGTGCCCCCCTCCCCCTTCCCCATCTCGG CACTAGAATTCGCCACTCTCCCACCCCCCAGCCCCCACCTCTGCCTCCAGGTCTCATCTTCCACCCCAAAAATGTCTGTCTCTCTCTTTT TGTTTTGTTTGTTGTTGGTTTTTTATTTCTTTTTGGTTTGCTTTCTGTTTTTGTTTTGTTTTTCTTTTTTTTCTTTCTTTTTTTTTTTTT TTTACAATTTTGAGGTCTTCGTGTTCAAGGAGAAGCTATTATATTTTGTTAAGAAAGTGGGGAGAAAAAAACCAAGAGGCCACCGTGCCT >In-frame_NOMO3_ENST00000263012_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_3083nt GCGGCGTGCAGTGTGAGGGGCGGGACCCGGCTGCCGGCGGTGGGTCTAGCTGGGGGAGGTCGGGCCATGCTGGTGGGCCAGGGCGCGGGG CCGCTGGGGCCCGCGGTGGTCACCGCCGCGGTGGTGCTGCTGCTGAGCGGCGTGGGGCCGGCGCACGGCTCGGAGGACATCGTGGTGGGC TGCGGTGGCTTCGTCAAGTCGGACGTGGAGATCAACTACTCTCTCATCGAGATAAAGCTGTACACCAAGCATGGGACTTTGAAATACCAG ACAGACTGTGCCCCTAATAATGGTTACTTTATGATCCCTTTGTATGATAAGGGGGATTTCATTCTGAAGATTGAGCCTCCCCTAGGGTGG AGTTTTGAGCCGACGACCGTGGAGCTCCATGTGGATGGAGTCAGTGACATCTGCACAAAGGGTGGGGACATCAACTTTGTCTTCACTGGG TTCTCTGTGAATGGCAAGGTCCTCAGCAAAGGGCAGCCCCTGGGTCCTGCGGGAGTTCAGGTGTCTCTGAGAAACACTGGGACCGAAGCA AAGATCCAGTCCACAGTTACACAGCCTGGCGGAAAGTTTGCATTTTTTAAAGTTCTGCCTGGAGATTATGAAATCCTCGCAACTCATCCA ACCTGGGCGTTGAAAGAGGCAAGCACCACAGTGCGTGTAACCAACTCCAATGCCAATGCGGCCAGTCCCCTCATAGTTGCTGGCTACAAT GTGTCTGGCTCTGTCCGAAGTGATGGGGAGCCCATGAAAGGCGTGAAGTTTCTTCTCTTTTCTTCTTTAGTAACTAAAGAGGATGTCCTG GGCTGCAATGTCTCACCAGTGCCTGGGTTCCAGCCCCAAGACGAGAGTCTGGTGTATTTGTGCTACACGGTCTCCAGAGAAGATGGCTCG TTCTCTTTCTATTCCTTGCCAAGTGGGGGCTACACTGTGATTCCGTTCTATCGAGGGGAGAGGATTACCTTTGATGTGGCGCCTTCCAGA CTTGACTTCACAGTGGAGCATGACAGCTTGAAAATCGAGCCCGTGTTCCACGTCATGGGATTCTCCGTCACCGGGAGGGTCTTGAACGGA CCCGAAGGAGATGGTGTTCCAGAAGCAGTAGTCACCCTGAATAACCAAATCAAAGTTAAAACAAAAGCTGATGGCTCATTCCGCCTTGAG AACATAACCACAGGGACATACACCATCCATGCTCAGAAAGAGCACCTCTACTTTGAAACGGTCACCATCAAAATTGCACCAAACACACCT CAGCTGGCTGACATTGTTGCAACAGGCCTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGACCAGGAGCGGCGGATTCGGCGGGAG ATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGATTCCAGTCCCTCAAGACCCTCATCCCCCACACAGACGGAGAG AAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCCGAGTACATCTTCTCCCTGGAGCAGGAGAAGACCAGGCTCTTGCAGCAGAACACA CAGCTCAAGCGCTTCATCCAGGAGCTGAGCGGCTCGTCCCCCAAGCGACGGCGGGCAGAGGACAAGGACGAAGGCATAGGCTCCCCGGAC ATCTGGGAGGACGAGAAGGCGGAGGACCTGCGGCGGGAGATGATTGAGCTGCGGCAGCAGCTGGACAAGGAGCGCTCGGTGCGCATGATG CTGGAGGAGCAGGTGCGCTCGCTGGAGGCCCACATGTACCCGGAAAAGCTCAAGGTGATTGCGCAGCAGGTGCAGCTGCAGCAGCAGCAG GAACAGGTGAGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGCAGCTGCGGACCCAGCTTCTGCCCCCTCCGGCCCCCACCCAC CACCCCACGGTGATCGTGCCAGCACCGCCTCCTCCTCCCTCCCACCACATCAATGTCGTCACCATGGGCCCCTCCTCGGTCATCAACTCT GTTTCCACATCCCGGCAAAATCTGGACACCATCGTGCAGGCAATCCAGCACATCGAGGGCACCCAGGAAAAGCAGGAGCTGGAGGAGGAG CAGCGGCGAGCTGTCATCGTGAAGCCTGTCCGCAGCTGCCCGGAGGCCCCCACCTCTGACACCGCCTCCGACTCCGAGGCCTCAGACAGT GACGCCATGGACCAGAGCCGGGAGGAGCCGTCGGGGGACGGGGAGCTTCCCTGACTACCCCCCCAGCCCTCCTCTCCCTTCTGGGGGCTG GAGGGAGCCGGGGCAGCCACAGGGAGAGACATGGGCGAATGAGTGAGAAATTTTTACAAAATTACGATGTCATTTGGGTCTCTTTTATGA CCTCTTTTTCAATACTGTAAATCGACCTTTGAACGAAGCCACTCAACCCGAGGTCCCGGGGCTGGGGTGTCGCAGAGCGTGTGGGAGCAT CGGCACCCCAGGGCGGGGCCTCGGCCCCGGGGGCTGGAGGAAGCTGACACGGAGATGCCTGGCCTCTCTCTGCCAAAAAGCATTTTTTCC TTTAAATATGTTTTTTAAGAACAGGGAAAATTAAACAAAACCCCAGGTTATTTCTTCCCTGCCCAGAGCCAGCCTGGGATTGTCAGCCTT CAATCCCCTTTCCTTCCTCTTTTTGGGTTTTCTTCTTTCTCCTTTAAGCACTTACATGGTTGGGGGTAAGACTAGGCTGGGGCATTCTGG GGGCCCGGAGGTCTCCGTTGCTTCTTGGTTGGGGTTTGCTGCTGCTGTGCCCCCCTCCCCCTTCCCCATCTCGGCACTAGAATTCGCCAC TCTCCCACCCCCCAGCCCCCACCTCTGCCTCCAGGTCTCATCTTCCACCCCAAAAATGTCTGTCTCTCTCTTTTTGTTTTGTTTGTTGTT GGTTTTTTATTTCTTTTTGGTTTGCTTTCTGTTTTTGTTTTGTTTTTCTTTTTTTTCTTTCTTTTTTTTTTTTTTTTACAATTTTGAGGT CTTCGTGTTCAAGGAGAAGCTATTATATTTTGTTAAGAAAGTGGGGAGAAAAAAACCAAGAGGCCACCGTGCCTTTGTAAAGAAACAAAA >In-frame_NOMO3_ENST00000538468_chr16_16350015_+_TFAP4_ENST00000204517_chr16_4312702_-_2944nt GCCGGCGGTGGGTCTAGCTGGGGGAGGTCGGGCCATGCTGGTGGGCCAGGGCGCGGGGCCGCTGGGGCCCGCGGTGGTCACCGCCGCGGT GGTGCTGCTGCTGAGCGGCGTGGGGCCGGCGCACGGCTCGGAGGACATCGTGGTGGGCTGCGGTGGCTTCGTCAAGTCGGACGTGGAGAT CAACTACTCTCTCATCGAGATAAAGCTGTACACCAAGCATGGGACTTTGAAATACCAGACAGACTGTGCCCCTAATAATGGTTACTTTAT GATCCCTTTGTATGATAAGGGGGATTTCATTCTGAAGATTGAGCCTCCCCTAGGGTGGAGTTTTGAGCCGACGACCGTGGAGCTCCATGT GGATGGAGTCAGTGACATCTGCACAAAGGGTGGGGACATCAACTTTGTCTTCACTGGGTTCTCTGTGAATGGCAAGGTTTGCATTTTTTA AAGTTCTGCCTGGAGATTATGAAATCCTCGCAACTCATCCAACCTGGGCGTTGAAAGAGGCAAGCACCACAGTGCGTGTAACCAACTCCA ATGCCAATGCGGCCAGTCCCCTCATAGTTGCTGGCTACAATGTGTCTGGCTCTGTCCGAAGTGATGGGGAGCCCATGAAAGGCGTGAAGT TTCTTCTCTTTTCTTCTTTAGTAACTAAAGAGGATGTCCTGGGCTGCAATGTCTCACCAGTGCCTGGGTTCCAGCCCCAAGACGAGAGTC TGGTGTATTTGTGCTACACGGTCTCCAGAGAAGATGGCTCGTTCTCTTTCTATTCCTTGCCAAGTGGGGGCTACACTGTGATTCCGTTCT ATCGAGGGGAGAGGATTACCTTTGATGTGGCGCCTTCCAGACTTGACTTCACAGTGGAGCATGACAGCTTGAAAATCGAGCCCGTGTTCC ACGTCATGGGATTCTCCGTCACCGGGAGGGTCTTGAACGGACCCGAAGGAGATGGTGTTCCAGAAGCAGTAGTCACCCTGAATAACCAAA TCAAAGTTAAAACAAAAGCTGATGGCTCATTCCGCCTTGAGAACATAACCACAGGGACATACACCATCCATGCTCAGAAAGAGCACCTCT ACTTTGAAACGGTCACCATCAAAATTGCACCAAACACACCTCAGCTGGCTGACATTGTTGCAACAGGCCTTGCCAACATTCCACTAACCC CCGAGACTCAGCGGGACCAGGAGCGGCGGATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGAT TCCAGTCCCTCAAGACCCTCATCCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCCGAGTACATCTTCT CCCTGGAGCAGGAGAAGACCAGGCTCTTGCAGCAGAACACACAGCTCAAGCGCTTCATCCAGGAGCTGAGCGGCTCGTCCCCCAAGCGAC GGCGGGCAGAGGACAAGGACGAAGGCATAGGCTCCCCGGACATCTGGGAGGACGAGAAGGCGGAGGACCTGCGGCGGGAGATGATTGAGC TGCGGCAGCAGCTGGACAAGGAGCGCTCGGTGCGCATGATGCTGGAGGAGCAGGTGCGCTCGCTGGAGGCCCACATGTACCCGGAAAAGC TCAAGGTGATTGCGCAGCAGGTGCAGCTGCAGCAGCAGCAGGAACAGGTGAGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGC AGCTGCGGACCCAGCTTCTGCCCCCTCCGGCCCCCACCCACCACCCCACGGTGATCGTGCCAGCACCGCCTCCTCCTCCCTCCCACCACA TCAATGTCGTCACCATGGGCCCCTCCTCGGTCATCAACTCTGTTTCCACATCCCGGCAAAATCTGGACACCATCGTGCAGGCAATCCAGC ACATCGAGGGCACCCAGGAAAAGCAGGAGCTGGAGGAGGAGCAGCGGCGAGCTGTCATCGTGAAGCCTGTCCGCAGCTGCCCGGAGGCCC CCACCTCTGACACCGCCTCCGACTCCGAGGCCTCAGACAGTGACGCCATGGACCAGAGCCGGGAGGAGCCGTCGGGGGACGGGGAGCTTC CCTGACTACCCCCCCAGCCCTCCTCTCCCTTCTGGGGGCTGGAGGGAGCCGGGGCAGCCACAGGGAGAGACATGGGCGAATGAGTGAGAA ATTTTTACAAAATTACGATGTCATTTGGGTCTCTTTTATGACCTCTTTTTCAATACTGTAAATCGACCTTTGAACGAAGCCACTCAACCC GAGGTCCCGGGGCTGGGGTGTCGCAGAGCGTGTGGGAGCATCGGCACCCCAGGGCGGGGCCTCGGCCCCGGGGGCTGGAGGAAGCTGACA CGGAGATGCCTGGCCTCTCTCTGCCAAAAAGCATTTTTTCCTTTAAATATGTTTTTTAAGAACAGGGAAAATTAAACAAAACCCCAGGTT ATTTCTTCCCTGCCCAGAGCCAGCCTGGGATTGTCAGCCTTCAATCCCCTTTCCTTCCTCTTTTTGGGTTTTCTTCTTTCTCCTTTAAGC ACTTACATGGTTGGGGGTAAGACTAGGCTGGGGCATTCTGGGGGCCCGGAGGTCTCCGTTGCTTCTTGGTTGGGGTTTGCTGCTGCTGTG CCCCCCTCCCCCTTCCCCATCTCGGCACTAGAATTCGCCACTCTCCCACCCCCCAGCCCCCACCTCTGCCTCCAGGTCTCATCTTCCACC CCAAAAATGTCTGTCTCTCTCTTTTTGTTTTGTTTGTTGTTGGTTTTTTATTTCTTTTTGGTTTGCTTTCTGTTTTTGTTTTGTTTTTCT TTTTTTTCTTTCTTTTTTTTTTTTTTTTACAATTTTGAGGTCTTCGTGTTCAAGGAGAAGCTATTATATTTTGTTAAGAAAGTGGGGAGA |
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FusionGenePPI for NOMO3_TFAP4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NOMO3 | RYK, UBQLN4, LIG4, FBXO6, TMEM25, EWSR1, FPR2, TPCN2 | TFAP4 | FBXW11, ELAVL1, CLOCK, USF2, NFATC2, TFCP2, GTF2I, UBP1, NR2F1, NR2F2, NFIC, NR2F6, PKNOX1, SP1, NFIA, BRCA1, ZHX3, ZBTB7B, SP3, ESRRA, APEX1, TERF2IP, HMGB3, TOPBP1, MDC1, HMGB2, POLE2, HMGB1, PCNA, PARP2, TERF2, RAD50, ZBTB7A, CTBP1, WIZ, CTCF, TFCP2L1, SIN3B, MBD2, SMARCB1, ARID1A, SMARCC2, SMARCE1, ARID2, EHMT1, EHMT2, SAP130, HDAC1, HDAC2, TTF2, BTAF1, DNTTIP1, VRK1, ZNF462, BRD7, C4orf27, CHRAC1, YEATS2, ZZZ3, S100A8, ELMSAN1, ZNF335, UHRF2, PRDM16, INO80E, PPP6R3, RAN, THYN1, CABIN1, CKAP5, NAV3, NGEF, DDX39B, MTA3, SOGA3, HMGB1P10, TP53, SRP54, XRCC5, BTRC, SKP1, CUL1, GOLGA2, TRAF1, EXOSC8, NEU2, SNRNP200, BPTF, PDE9A, RBPJ, FOXA1, FOXE1, FOXK2, ADAMTS4, ANGPTL7, HIRA, OBFC1, UBN2, TRIB2, CTC1, FOXK1, WDR45B, ARRB2, KCTD2, ATF1, SIN3A, GNB4 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NOMO3_TFAP4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NOMO3_TFAP4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |