|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 24536 |
FusionGeneSummary for NOD1_NOD1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: NOD1_NOD1 | Fusion gene ID: 24536 | Hgene | Tgene | Gene symbol | NOD1 | NOD1 | Gene ID | 10392 | 10392 |
| Gene name | nucleotide binding oligomerization domain containing 1 | nucleotide binding oligomerization domain containing 1 | |
| Synonyms | CARD4|CLR7.1|NLRC1 | CARD4|CLR7.1|NLRC1 | |
| Cytomap | 7p14.3 | 7p14.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | nucleotide-binding oligomerization domain-containing protein 1NLR family, CARD domain containing 1caspase recruitment domain family, member 4caspase recruitment domain-containing protein 4nucleotide-binding oligomerization domain, leucine rich repeat | nucleotide-binding oligomerization domain-containing protein 1NLR family, CARD domain containing 1caspase recruitment domain family, member 4caspase recruitment domain-containing protein 4nucleotide-binding oligomerization domain, leucine rich repeat | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9Y239 | Q9Y239 | |
| Ensembl transtripts involved in fusion gene | ENST00000222823, ENST00000423334, | ENST00000222823, ENST00000423334, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
| # samples | 1 | 1 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: NOD1 [Title/Abstract] AND NOD1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | NOD1 | GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | 10329646 |
| Hgene | NOD1 | GO:0016045 | detection of bacterium | 15653568 |
| Hgene | NOD1 | GO:0035556 | intracellular signal transduction | 15653568 |
| Hgene | NOD1 | GO:0042228 | interleukin-8 biosynthetic process | 15653568 |
| Hgene | NOD1 | GO:0042742 | defense response to bacterium | 15653568 |
| Hgene | NOD1 | GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | 10329646 |
| Hgene | NOD1 | GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 10329646 |
| Hgene | NOD1 | GO:0051092 | positive regulation of NF-kappaB transcription factor activity | 17054981|19043560 |
| Tgene | NOD1 | GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | 10329646 |
| Tgene | NOD1 | GO:0016045 | detection of bacterium | 15653568 |
| Tgene | NOD1 | GO:0035556 | intracellular signal transduction | 15653568 |
| Tgene | NOD1 | GO:0042228 | interleukin-8 biosynthetic process | 15653568 |
| Tgene | NOD1 | GO:0042742 | defense response to bacterium | 15653568 |
| Tgene | NOD1 | GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | 10329646 |
| Tgene | NOD1 | GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 10329646 |
| Tgene | NOD1 | GO:0051092 | positive regulation of NF-kappaB transcription factor activity | 17054981|19043560 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | CB163924 | NOD1 | chr7 | 30469118 | + | NOD1 | chr7 | 30464202 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000222823 | ENST00000222823 | NOD1 | chr7 | 30469118 | + | NOD1 | chr7 | 30464202 | - |
| intron-intron | ENST00000222823 | ENST00000423334 | NOD1 | chr7 | 30469118 | + | NOD1 | chr7 | 30464202 | - |
| intron-3UTR | ENST00000423334 | ENST00000222823 | NOD1 | chr7 | 30469118 | + | NOD1 | chr7 | 30464202 | - |
| intron-intron | ENST00000423334 | ENST00000423334 | NOD1 | chr7 | 30469118 | + | NOD1 | chr7 | 30464202 | - |
Top |
FusionProtFeatures for NOD1_NOD1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| NOD1 | NOD1 |
| Enhances caspase-9-mediated apoptosis. Induces NF-kappa-B activity via RIPK2 and IKK-gamma. Confers responsiveness tointracellular bacterial lipopolysaccharides (LPS). Forms anintracellular sensing system along with ARHGEF2 for the detectionof microbial effectors during cell invasion by pathogens. Requiredfor RHOA and RIPK2 dependent NF-kappa-B signaling pathwayactivation upon S.flexneri cell invasion. Involved not only insensing peptidoglycan (PGN)-derived muropeptides but also in theactivation of NF-kappa-B by Shigella effector proteins IpgB2 andOspB. Recruits NLRP10 to the cell membrane following bacterialinfection. {ECO:0000269|PubMed:11058605,ECO:0000269|PubMed:17054981, ECO:0000269|PubMed:19043560,ECO:0000269|PubMed:22672233}. | Enhances caspase-9-mediated apoptosis. Induces NF-kappa-B activity via RIPK2 and IKK-gamma. Confers responsiveness tointracellular bacterial lipopolysaccharides (LPS). Forms anintracellular sensing system along with ARHGEF2 for the detectionof microbial effectors during cell invasion by pathogens. Requiredfor RHOA and RIPK2 dependent NF-kappa-B signaling pathwayactivation upon S.flexneri cell invasion. Involved not only insensing peptidoglycan (PGN)-derived muropeptides but also in theactivation of NF-kappa-B by Shigella effector proteins IpgB2 andOspB. Recruits NLRP10 to the cell membrane following bacterialinfection. {ECO:0000269|PubMed:11058605,ECO:0000269|PubMed:17054981, ECO:0000269|PubMed:19043560,ECO:0000269|PubMed:22672233}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for NOD1_NOD1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for NOD1_NOD1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for NOD1_NOD1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for NOD1_NOD1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | NOD1 | C0027765 | nervous system disorder | 1 | CTD_human |
| Tgene | NOD1 | C0027765 | nervous system disorder | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|