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Fusion gene ID: 24358 |
FusionGeneSummary for NINL_GBAS |
Fusion gene summary |
Fusion gene information | Fusion gene name: NINL_GBAS | Fusion gene ID: 24358 | Hgene | Tgene | Gene symbol | NINL | GBAS | Gene ID | 22981 |
Gene name | ninein like | ||
Synonyms | NLP | ||
Cytomap | 20p11.21 | ||
Type of gene | protein-coding | ||
Description | ninein-like protein | ||
Modification date | 20180523 | ||
UniProtAcc | Q9Y2I6 | ||
Ensembl transtripts involved in fusion gene | ENST00000278886, ENST00000422516, ENST00000464285, | ENST00000446778, ENST00000322090, ENST00000487370, | |
Fusion gene scores | * DoF score | 5 X 4 X 5=100 | 2 X 2 X 2=8 |
# samples | 5 | 2 | |
** MAII score | log2(5/100*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: NINL [Title/Abstract] AND GBAS [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUAD | TCGA-78-7539-01A | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000278886 | ENST00000446778 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
In-frame | ENST00000278886 | ENST00000322090 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
5CDS-intron | ENST00000278886 | ENST00000487370 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
In-frame | ENST00000422516 | ENST00000446778 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
In-frame | ENST00000422516 | ENST00000322090 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
5CDS-intron | ENST00000422516 | ENST00000487370 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
intron-3CDS | ENST00000464285 | ENST00000446778 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
intron-3CDS | ENST00000464285 | ENST00000322090 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
intron-intron | ENST00000464285 | ENST00000487370 | NINL | chr20 | 25477299 | - | GBAS | chr7 | 56051421 | + |
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FusionProtFeatures for NINL_GBAS |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
NINL | GBAS |
Involved in the microtubule organization in interphasecells. Overexpression induces the fragmentation of the Golgi, andcauses lysosomes to disperse toward the cell periphery; it alsointerferes with mitotic spindle assembly. May play a role inovarian carcinogenesis. {ECO:0000269|PubMed:12852856,ECO:0000269|PubMed:16254247, ECO:0000269|PubMed:18538832}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 246_257 | 436 | 1383 | Calcium binding | Ontology_term=ECO:0000255 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 246_257 | 436 | 1034 | Calcium binding | Ontology_term=ECO:0000255 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 384_424 | 436 | 1383 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 384_424 | 436 | 1034 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 296_299 | 436 | 1383 | Compositional bias | Note=Poly-Thr |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 296_299 | 436 | 1034 | Compositional bias | Note=Poly-Thr |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 196_231 | 436 | 1383 | Domain | EF-hand 3 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 233_268 | 436 | 1383 | Domain | EF-hand 4 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 41_76 | 436 | 1383 | Domain | EF-hand 2 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 7_42 | 436 | 1383 | Domain | EF-hand 1 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 196_231 | 436 | 1034 | Domain | EF-hand 3 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 233_268 | 436 | 1034 | Domain | EF-hand 4 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 41_76 | 436 | 1034 | Domain | EF-hand 2 |
Hgene | NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 7_42 | 436 | 1034 | Domain | EF-hand 1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 1046_1375 | 436 | 1383 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 484_579 | 436 | 1383 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 616_699 | 436 | 1383 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 1046_1375 | 436 | 1034 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 484_579 | 436 | 1034 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 616_699 | 436 | 1034 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 805_810 | 436 | 1383 | Compositional bias | Note=Poly-Glu |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 805_810 | 436 | 1034 | Compositional bias | Note=Poly-Glu |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000278886 | - | 10 | 24 | 633_641 | 436 | 1383 | Motif | Note=D-box |
Hgene | >NINL | chr20:25477299 | chr7:56051421 | ENST00000422516 | - | 10 | 23 | 633_641 | 436 | 1034 | Motif | Note=D-box |
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FusionGeneSequence for NINL_GBAS |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_NINL_ENST00000278886_chr20_25477299_-_GBAS_ENST00000446778_chr7_56051421_+_575aa MDEEENHYVSQLREVYSSCDTTGTGFLDRQELTQLCLKLHLEQQLPVLLQTLLGNDHFARVNFEEFKEGFVAVLSSNAGVRPSDEDSSSL ESAASSAIPPKYVNGSKWYGRRSRPELCDAATEARRVPEQQTQASLKSHLWRSASLESVESPKSDEEAESTKEAQNELFEAQGQLQTWDS EDFGSPQKSCSPSFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALL LESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSIDDGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELT WALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLARERDKARQDLERAEKRNLEFVKEMDDCHSTLEQLTEKKIKNFWNFVRQEVTCF SPGRISSCWSSVSGMSLCQDPDLIYMNSGLTNSDQEPXLNGAITGLVQSASDRMVTKPSEDSSLRLGSCTWCTIFGLTGIFRPGKTYGMQ >In-frame_NINL_ENST00000278886_chr20_25477299_-_GBAS_ENST00000322090_chr7_56051421_+_575aa MDEEENHYVSQLREVYSSCDTTGTGFLDRQELTQLCLKLHLEQQLPVLLQTLLGNDHFARVNFEEFKEGFVAVLSSNAGVRPSDEDSSSL ESAASSAIPPKYVNGSKWYGRRSRPELCDAATEARRVPEQQTQASLKSHLWRSASLESVESPKSDEEAESTKEAQNELFEAQGQLQTWDS EDFGSPQKSCSPSFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALL LESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSIDDGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELT WALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLARERDKARQDLERAEKRNLEFVKEMDDCHSTLEQLTEKKIKNFWNFVRQEVTCF SPGRISSCWSSVSGMSLCQDPDLIYMNSGLTNSDQEPXLNGAITGLVQSASDRMVTKPSEDSSLRLGSCTWCTIFGLTGIFRPGKTYGMQ >In-frame_NINL_ENST00000422516_chr20_25477299_-_GBAS_ENST00000446778_chr7_56051421_+_575aa MDEEENHYVSQLREVYSSCDTTGTGFLDRQELTQLCLKLHLEQQLPVLLQTLLGNDHFARVNFEEFKEGFVAVLSSNAGVRPSDEDSSSL ESAASSAIPPKYVNGSKWYGRRSRPELCDAATEARRVPEQQTQASLKSHLWRSASLESVESPKSDEEAESTKEAQNELFEAQGQLQTWDS EDFGSPQKSCSPSFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALL LESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSIDDGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELT WALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLARERDKARQDLERAEKRNLEFVKEMDDCHSTLEQLTEKKIKNFWNFVRQEVTCF SPGRISSCWSSVSGMSLCQDPDLIYMNSGLTNSDQEPXLNGAITGLVQSASDRMVTKPSEDSSLRLGSCTWCTIFGLTGIFRPGKTYGMQ >In-frame_NINL_ENST00000422516_chr20_25477299_-_GBAS_ENST00000322090_chr7_56051421_+_575aa MDEEENHYVSQLREVYSSCDTTGTGFLDRQELTQLCLKLHLEQQLPVLLQTLLGNDHFARVNFEEFKEGFVAVLSSNAGVRPSDEDSSSL ESAASSAIPPKYVNGSKWYGRRSRPELCDAATEARRVPEQQTQASLKSHLWRSASLESVESPKSDEEAESTKEAQNELFEAQGQLQTWDS EDFGSPQKSCSPSFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALL LESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSIDDGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELT WALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLARERDKARQDLERAEKRNLEFVKEMDDCHSTLEQLTEKKIKNFWNFVRQEVTCF SPGRISSCWSSVSGMSLCQDPDLIYMNSGLTNSDQEPXLNGAITGLVQSASDRMVTKPSEDSSLRLGSCTWCTIFGLTGIFRPGKTYGMQ |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_NINL_ENST00000278886_chr20_25477299_-_GBAS_ENST00000446778_chr7_56051421_+_1727nt ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAG GAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGG GTTAACTTTGAGGAATTTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTG GAATCAGCTGCCTCCAGTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCT GCCACAGAAGCCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAG AGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCT GAGGACTTTGGGAGCCCCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTG GGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGAC CTGTTTAACAAACTGGATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTT CTAGAGTCTTCCACTCGGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCA TCCCTCGTGTCCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATG TGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACC TGGGCCCTTGACAACGAGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAA GGGCAGGTGGAGCAGCTGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAG ATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTC TCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTT ACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAG GATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAG CATGGCACAAACATGGCTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGA >In-frame_NINL_ENST00000278886_chr20_25477299_-_GBAS_ENST00000322090_chr7_56051421_+_1727nt ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAG GAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGG GTTAACTTTGAGGAATTTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTG GAATCAGCTGCCTCCAGTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCT GCCACAGAAGCCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAG AGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCT GAGGACTTTGGGAGCCCCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTG GGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGAC CTGTTTAACAAACTGGATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTT CTAGAGTCTTCCACTCGGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCA TCCCTCGTGTCCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATG TGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACC TGGGCCCTTGACAACGAGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAA GGGCAGGTGGAGCAGCTGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAG ATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTC TCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTT ACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAG GATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAG CATGGCACAAACATGGCTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGA >In-frame_NINL_ENST00000422516_chr20_25477299_-_GBAS_ENST00000446778_chr7_56051421_+_1727nt ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAG GAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGG GTTAACTTTGAGGAATTTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTG GAATCAGCTGCCTCCAGTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCT GCCACAGAAGCCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAG AGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCT GAGGACTTTGGGAGCCCCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTG GGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGAC CTGTTTAACAAACTGGATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTT CTAGAGTCTTCCACTCGGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCA TCCCTCGTGTCCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATG TGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACC TGGGCCCTTGACAACGAGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAA GGGCAGGTGGAGCAGCTGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAG ATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTC TCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTT ACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAG GATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAG CATGGCACAAACATGGCTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGA >In-frame_NINL_ENST00000422516_chr20_25477299_-_GBAS_ENST00000322090_chr7_56051421_+_1727nt ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAG GAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGG GTTAACTTTGAGGAATTTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTG GAATCAGCTGCCTCCAGTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCT GCCACAGAAGCCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAG AGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCT GAGGACTTTGGGAGCCCCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTG GGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGAC CTGTTTAACAAACTGGATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTT CTAGAGTCTTCCACTCGGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCA TCCCTCGTGTCCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATG TGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACC TGGGCCCTTGACAACGAGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAA GGGCAGGTGGAGCAGCTGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAG ATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTC TCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTT ACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAG GATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAG CATGGCACAAACATGGCTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_NINL_ENST00000278886_chr20_25477299_-_GBAS_ENST00000446778_chr7_56051421_+_2910nt GCGGTACGGGGGTGGTGCCGCGCTCCTGGCCCCGCGCGGGCGGACGGCGGAGGCGCCTCCCAGCCTGCTATGGGATGGATGAAGAAGAGA ACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAGGAGCTGACCCAGCTCT GCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAAT TTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTGCCTCCA GTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCTGCCACAGAAGCCAGAC GCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAGAGTCCCAAGTCAGATG AAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCC CCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTGGGCAGCAGCGGACACC TGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGG ATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAGAGTCTTCCACTC GGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCATCCCTCGTGTCCCTGT GCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATGTGGACCCAGGAGGGGA TTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAACG AGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAAGGGCAGGTGGAGCAGC TGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAGATGGACGACTGCCACT CCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCA GCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGG AACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGAT TGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAGCATGGCACAAACATGG CTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGACCTCGCCCCTCCAGTA AAGCTGTAGAGTTTCTATGTGCCTACATACATTTCTGTGACAAGTATTTGTCGTAAATTAATTTTAATTGTGTATCAAGTGAAAAAGAAA CACTGAGGTTTTAAGCTGCTGTATATAGCTTGTGAGAAACCTCTTTTCTTTAAAATTTACATAATCACAAGAAAGGAAAGAATTACAGTT GGACTGATTGTGACAGTGCCTTGTCGTCCTCTTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCACCC TCCAGAAGGGGTCCACGTTGAATTCTGAATCATCTTGAAAATAAGATTCCAACCACAAAAAAAATTTAGCCATTTCTTTACTAAAAAAAA CCAAAAAACAAATCTGTTTTATAATCACAGATTTTTAGACAAATTTCTTGTATCAGGAAGAAATACAAATTTTGTCATGTTTCTCAAGCA GTTTTTCTGAGTAGTTTCTGAGGAGGAACAAATTACAAGTGTACCCAATAACTGAAAATGTTTTAACTCACTCTCATTTGTAAGCAGTCC ACATAGTAGACAATGGGTTTTCCAAGCTGGGCAAGGTACATTTAATCAGTAAATCAGTTTCACATCATGTATTGTGATGTTTCAATGTGA GACACAAAAACAATGGCTTGAAACTTGTGTATCATATGTGATTTTGAAATGAACACCTTGAATAGCACTAATTTTTATTTGTGGTATTTT TCTATAACAAAACAAGTAGCTCTAGGAAAAGAGGTTTTATTTTGTAAACGATCATTTGTGACCTCAGACACTCTCTGGCTAATATTTTAA TAAGCTCACAGCAGATAATTCTGAGATCATGGGTGAGGGGTGGTGCATGTTGAGATTTAAATTGGCATAAAGCTGCATACTTTTTGTCTA GCTGTTTGATTTCATTTTTTAATATAGTATGCCAATTTTGTGACTGTTACCATGTGAAAGTCCTGTTGAAATGAACAATTGTCTGCCCCA CAATCAAGAATGTATGTGTAAAGTGTGAATAAATCTCATATCAAATGTCAAACTTTTACATGTGAATGATTTTCTCAAAGAACATAGAAA >In-frame_NINL_ENST00000278886_chr20_25477299_-_GBAS_ENST00000322090_chr7_56051421_+_2910nt GCGGTACGGGGGTGGTGCCGCGCTCCTGGCCCCGCGCGGGCGGACGGCGGAGGCGCCTCCCAGCCTGCTATGGGATGGATGAAGAAGAGA ACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAGGAGCTGACCCAGCTCT GCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAAT TTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTGCCTCCA GTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCTGCCACAGAAGCCAGAC GCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAGAGTCCCAAGTCAGATG AAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCC CCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTGGGCAGCAGCGGACACC TGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGG ATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAGAGTCTTCCACTC GGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCATCCCTCGTGTCCCTGT GCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATGTGGACCCAGGAGGGGA TTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAACG AGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAAGGGCAGGTGGAGCAGC TGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAGATGGACGACTGCCACT CCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCA GCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGG AACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGAT TGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAGCATGGCACAAACATGG CTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGACCTCGCCCCTCCAGTA AAGCTGTAGAGTTTCTATGTGCCTACATACATTTCTGTGACAAGTATTTGTCGTAAATTAATTTTAATTGTGTATCAAGTGAAAAAGAAA CACTGAGGTTTTAAGCTGCTGTATATAGCTTGTGAGAAACCTCTTTTCTTTAAAATTTACATAATCACAAGAAAGGAAAGAATTACAGTT GGACTGATTGTGACAGTGCCTTGTCGTCCTCTTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCACCC TCCAGAAGGGGTCCACGTTGAATTCTGAATCATCTTGAAAATAAGATTCCAACCACAAAAAAAATTTAGCCATTTCTTTACTAAAAAAAA CCAAAAAACAAATCTGTTTTATAATCACAGATTTTTAGACAAATTTCTTGTATCAGGAAGAAATACAAATTTTGTCATGTTTCTCAAGCA GTTTTTCTGAGTAGTTTCTGAGGAGGAACAAATTACAAGTGTACCCAATAACTGAAAATGTTTTAACTCACTCTCATTTGTAAGCAGTCC ACATAGTAGACAATGGGTTTTCCAAGCTGGGCAAGGTACATTTAATCAGTAAATCAGTTTCACATCATGTATTGTGATGTTTCAATGTGA GACACAAAAACAATGGCTTGAAACTTGTGTATCATATGTGATTTTGAAATGAACACCTTGAATAGCACTAATTTTTATTTGTGGTATTTT TCTATAACAAAACAAGTAGCTCTAGGAAAAGAGGTTTTATTTTGTAAACGATCATTTGTGACCTCAGACACTCTCTGGCTAATATTTTAA TAAGCTCACAGCAGATAATTCTGAGATCATGGGTGAGGGGTGGTGCATGTTGAGATTTAAATTGGCATAAAGCTGCATACTTTTTGTCTA GCTGTTTGATTTCATTTTTTAATATAGTATGCCAATTTTGTGACTGTTACCATGTGAAAGTCCTGTTGAAATGAACAATTGTCTGCCCCA CAATCAAGAATGTATGTGTAAAGTGTGAATAAATCTCATATCAAATGTCAAACTTTTACATGTGAATGATTTTCTCAAAGAACATAGAAA >In-frame_NINL_ENST00000422516_chr20_25477299_-_GBAS_ENST00000446778_chr7_56051421_+_2910nt GCGGTACGGGGGTGGTGCCGCGCTCCTGGCCCCGCGCGGGCGGACGGCGGAGGCGCCTCCCAGCCTGCTATGGGATGGATGAAGAAGAGA ACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAGGAGCTGACCCAGCTCT GCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAAT TTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTGCCTCCA GTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCTGCCACAGAAGCCAGAC GCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAGAGTCCCAAGTCAGATG AAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCC CCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTGGGCAGCAGCGGACACC TGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGG ATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAGAGTCTTCCACTC GGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCATCCCTCGTGTCCCTGT GCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATGTGGACCCAGGAGGGGA TTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAACG AGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAAGGGCAGGTGGAGCAGC TGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAGATGGACGACTGCCACT CCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCA GCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGG AACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGAT TGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAGCATGGCACAAACATGG CTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGACCTCGCCCCTCCAGTA AAGCTGTAGAGTTTCTATGTGCCTACATACATTTCTGTGACAAGTATTTGTCGTAAATTAATTTTAATTGTGTATCAAGTGAAAAAGAAA CACTGAGGTTTTAAGCTGCTGTATATAGCTTGTGAGAAACCTCTTTTCTTTAAAATTTACATAATCACAAGAAAGGAAAGAATTACAGTT GGACTGATTGTGACAGTGCCTTGTCGTCCTCTTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCACCC TCCAGAAGGGGTCCACGTTGAATTCTGAATCATCTTGAAAATAAGATTCCAACCACAAAAAAAATTTAGCCATTTCTTTACTAAAAAAAA CCAAAAAACAAATCTGTTTTATAATCACAGATTTTTAGACAAATTTCTTGTATCAGGAAGAAATACAAATTTTGTCATGTTTCTCAAGCA GTTTTTCTGAGTAGTTTCTGAGGAGGAACAAATTACAAGTGTACCCAATAACTGAAAATGTTTTAACTCACTCTCATTTGTAAGCAGTCC ACATAGTAGACAATGGGTTTTCCAAGCTGGGCAAGGTACATTTAATCAGTAAATCAGTTTCACATCATGTATTGTGATGTTTCAATGTGA GACACAAAAACAATGGCTTGAAACTTGTGTATCATATGTGATTTTGAAATGAACACCTTGAATAGCACTAATTTTTATTTGTGGTATTTT TCTATAACAAAACAAGTAGCTCTAGGAAAAGAGGTTTTATTTTGTAAACGATCATTTGTGACCTCAGACACTCTCTGGCTAATATTTTAA TAAGCTCACAGCAGATAATTCTGAGATCATGGGTGAGGGGTGGTGCATGTTGAGATTTAAATTGGCATAAAGCTGCATACTTTTTGTCTA GCTGTTTGATTTCATTTTTTAATATAGTATGCCAATTTTGTGACTGTTACCATGTGAAAGTCCTGTTGAAATGAACAATTGTCTGCCCCA CAATCAAGAATGTATGTGTAAAGTGTGAATAAATCTCATATCAAATGTCAAACTTTTACATGTGAATGATTTTCTCAAAGAACATAGAAA >In-frame_NINL_ENST00000422516_chr20_25477299_-_GBAS_ENST00000322090_chr7_56051421_+_2910nt GCGGTACGGGGGTGGTGCCGCGCTCCTGGCCCCGCGCGGGCGGACGGCGGAGGCGCCTCCCAGCCTGCTATGGGATGGATGAAGAAGAGA ACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGGCTTTCTGGACCGCCAGGAGCTGACCCAGCTCT GCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAAT TTAAGGAAGGTTTTGTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTGCCTCCA GTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCTGCCACAGAAGCCAGAC GCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGCGTGGAGAGTCCCAAGTCAGATG AAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCC CCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTGGGCAGCAGCGGACACC TGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGG ATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAGAGTCTTCCACTC GGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCATCCCTCGTGTCCCTGT GCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGTCCTGGCCATGTGGACCCAGGAGGGGA TTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAACG AGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAAGGGCAGGTGGAGCAGC TGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAGATGGACGACTGCCACT CCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCA GCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGG AACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGAT TGGGCAGCTGTACATGGTGCACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAGCATGGCACAAACATGG CTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGAAGACCTCGCCCCTCCAGTA AAGCTGTAGAGTTTCTATGTGCCTACATACATTTCTGTGACAAGTATTTGTCGTAAATTAATTTTAATTGTGTATCAAGTGAAAAAGAAA CACTGAGGTTTTAAGCTGCTGTATATAGCTTGTGAGAAACCTCTTTTCTTTAAAATTTACATAATCACAAGAAAGGAAAGAATTACAGTT GGACTGATTGTGACAGTGCCTTGTCGTCCTCTTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCACCC TCCAGAAGGGGTCCACGTTGAATTCTGAATCATCTTGAAAATAAGATTCCAACCACAAAAAAAATTTAGCCATTTCTTTACTAAAAAAAA CCAAAAAACAAATCTGTTTTATAATCACAGATTTTTAGACAAATTTCTTGTATCAGGAAGAAATACAAATTTTGTCATGTTTCTCAAGCA GTTTTTCTGAGTAGTTTCTGAGGAGGAACAAATTACAAGTGTACCCAATAACTGAAAATGTTTTAACTCACTCTCATTTGTAAGCAGTCC ACATAGTAGACAATGGGTTTTCCAAGCTGGGCAAGGTACATTTAATCAGTAAATCAGTTTCACATCATGTATTGTGATGTTTCAATGTGA GACACAAAAACAATGGCTTGAAACTTGTGTATCATATGTGATTTTGAAATGAACACCTTGAATAGCACTAATTTTTATTTGTGGTATTTT TCTATAACAAAACAAGTAGCTCTAGGAAAAGAGGTTTTATTTTGTAAACGATCATTTGTGACCTCAGACACTCTCTGGCTAATATTTTAA TAAGCTCACAGCAGATAATTCTGAGATCATGGGTGAGGGGTGGTGCATGTTGAGATTTAAATTGGCATAAAGCTGCATACTTTTTGTCTA GCTGTTTGATTTCATTTTTTAATATAGTATGCCAATTTTGTGACTGTTACCATGTGAAAGTCCTGTTGAAATGAACAATTGTCTGCCCCA CAATCAAGAATGTATGTGTAAAGTGTGAATAAATCTCATATCAAATGTCAAACTTTTACATGTGAATGATTTTCTCAAAGAACATAGAAA |
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FusionGenePPI for NINL_GBAS |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NINL | SPERT, TCEB3, CCDC33, MAD1L1, AKAP17A, UTP14A, ZNF646, GPKOW, LZTS2, ZFC3H1, KANSL1, DCTN5, SH3BP5L, TSPYL4, JUNB, ZNF426, ZFHX3, CLEC1B, SYT17, RIBC2, KAT7, GCC1, RGS2, CCDC130, APEX2, EWSR1, MCM10, ZNF250, TCEANC, RCOR3, TNNT1, MBIP, FAM107A, EZH2, LRSAM1, ANAPC2, CDC27, CDC20, FZR1, BRCA1, TUBG1, TUBGCP4, PLK1, LATS2, CEP250, KAT5, CCHCR1, RBM41, CCDC146, SH2D4A, FAM161A, L3MBTL4, HAUS1, ZNF417, LRRC39, CEP128, ABLIM1, ALDH3A2, ARHGAP21, ARRB2, CEP131, C1orf198, CC2D1A, CCDC138, CCDC14, CCDC66, CCDC85C, CCP110, CEP162, CEP350, CEP55, CEP85, CEP97, CKAP2, CNOT1, CSPP1, DYNC1H1, DYNC1LI2, FGFR1OP, GPATCH1, GPS2, IFT74, IFT81, KANK2, GSE1, KIAA1671, KIF14, KIF1B, ERVK3-1, LPP, LUZP1, MAP7D3, MPHOSPH9, MZT2A, NCKAP5L, NCOR1, NEDD1, NME7, OFD1, PALLD, PDLIM7, PPP1R13B, PRRC2B, SCYL2, SDCCAG3, SIPA1L3, SVIL, TCHP, TNRC6A, TNRC6B, TP53, TP53BP2, TROAP, TTK, TXLNA, TXLNG, WDR83, ZNF598, ANKHD1-EIF4EBP3, BCR, PROSER3, CAMK2B, CAMSAP1, CAMSAP2, CAMSAP3, CCDC112, CCDC22, CCDC77, CEP170, CEP192, CEP89, CEP95, CKAP5, CNOT10, CNOT3, COMMD2, CRKL, CYLD, DAPK3, DCAF7, DCP1B, DHX35, DIAPH3, DLG5, DNMBP, DSP, DYNC1LI1, EIF4ENIF1, ERC1, FAM83H, GIGYF1, GIGYF2, GTSE1, HAUS2, HAUS5, HAUS6, HAUS7, HDAC3, HSPA1B, HSPA1L, ITSN2, CEP170B, KIAA0753, KIAA1217, CEP295, KIF7, LATS1, LMO7, MICAL3, MIS18A, MIS18BP1, MPP5, MTUS1, NDEL1, PCM1, PDZD11, PIK3C2A, PLEKHA7, PLEKHG1, PPP1CA, PTPN13, RASSF8, RAVER1, RCOR1, RPGRIP1L, RQCD1, SASS6, SH3RF1, SHKBP1, SIPA1L1, SIPA1L2, SMG7, TANC1, TBK1, TBL1XR1, TDRD3, TNIP1, TTC28, TTF2, TUBGCP2, USP54, VPS45, XRN1, RBSN, CENPJ, LZTS3, GAN, ZNF408, CCDC172, MRPS34, NKAP, TPM2, CAMK2A, DCTN2, AHI1, DCTN1 | GBAS | KEAP1, OSBPL10, GABARAP, GABARAPL1, GABARAPL2, FOXO3, NIPSNAP1, NPEPPS, ANKFY1, FKBP4, PGK1, PA2G4, TARS, LARS, PFKP, HADHA, PARP1, PFAS, PRKDC, HK1, GANAB, MTA2, WARS, LONP1, DDX39A, ALDH9A1, NAMPT, MAP1LC3A, MAP1LC3B, SQSTM1, PRKCI, CUL3, CDH1, AMOT, VCP, MOV10, NXF1, PPP1R3B, DCP2, CD96, NTRK1, SCLT1, TMEM17, XPO1, HSPD1, WBP11, SF3B5, COQ9, NDUFA4, PRKCZ, KLHL22, CD44 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NINL_GBAS |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NINL_GBAS |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |