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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 24149

FusionGeneSummary for NFAT5_IST1

check button Fusion gene summary
Fusion gene informationFusion gene name: NFAT5_IST1
Fusion gene ID: 24149
HgeneTgene
Gene symbol

NFAT5

IST1

Gene ID

10725

9798

Gene namenuclear factor of activated T cells 5IST1, ESCRT-III associated factor
SynonymsNF-AT5|NFATL1|NFATZ|OREBP|TONEBPOLC1
Cytomap

16q22.1

16q22.2

Type of geneprotein-codingprotein-coding
Descriptionnuclear factor of activated T-cells 5NFAT-like protein 1T-cell transcription factor NFAT5TonE-binding proteinglutamine rich protein H65nuclear factor of activated T-cells 5, tonicity-responsiveosmotic response element-binding proteintonicity-responIST1 homologIST1, endosomal sorting complex required for transport-III componentincreased sodium tolerance 1 homologoverexpressed in lung cancer 1putative MAPK-activating protein PM28
Modification date2018052320180522
UniProtAcc

O94916

P53990

Ensembl transtripts involved in fusion geneENST00000349945, ENST00000432919, 
ENST00000354436, ENST00000567239, 
ENST00000393742, ENST00000566899, 
ENST00000544564, ENST00000541571, 
ENST00000535424, ENST00000378799, 
ENST00000538565, ENST00000606369, 
ENST00000329908, ENST00000538850, 
ENST00000378798, 
Fusion gene scores* DoF score20 X 6 X 14=16804 X 3 X 3=36
# samples 215
** MAII scorelog2(21/1680*10)=-3
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/36*10)=0.473931188332412
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: NFAT5 [Title/Abstract] AND IST1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneNFAT5

GO:0045944

positive regulation of transcription by RNA polymerase II

11485737

TgeneIST1

GO:0009838

abscission

19129479|19129480

TgeneIST1

GO:0019076

viral release from host cell

19129479

TgeneIST1

GO:0045862

positive regulation of proteolysis

20849418

TgeneIST1

GO:0046745

viral capsid secondary envelopment

19129479


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-E9-A1NA-01ANFAT5chr16

69600277

+IST1chr16

71961517

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000349945ENST00000544564NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000349945ENST00000541571NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000349945ENST00000535424NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000349945ENST00000378799NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000349945ENST00000538565NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000349945ENST00000606369NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000349945ENST00000329908NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000349945ENST00000538850NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000349945ENST00000378798NFAT5chr16

69600277

+IST1chr16

71961517

+
In-frameENST00000432919ENST00000544564NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000432919ENST00000541571NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000432919ENST00000535424NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000432919ENST00000378799NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000432919ENST00000538565NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000432919ENST00000606369NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000432919ENST00000329908NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000432919ENST00000538850NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000432919ENST00000378798NFAT5chr16

69600277

+IST1chr16

71961517

+
In-frameENST00000354436ENST00000544564NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000354436ENST00000541571NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000354436ENST00000535424NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000354436ENST00000378799NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000354436ENST00000538565NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000354436ENST00000606369NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000354436ENST00000329908NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000354436ENST00000538850NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000354436ENST00000378798NFAT5chr16

69600277

+IST1chr16

71961517

+
In-frameENST00000567239ENST00000544564NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000567239ENST00000541571NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000567239ENST00000535424NFAT5chr16

69600277

+IST1chr16

71961517

+
Frame-shiftENST00000567239ENST00000378799NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000567239ENST00000538565NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000567239ENST00000606369NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000567239ENST00000329908NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000567239ENST00000538850NFAT5chr16

69600277

+IST1chr16

71961517

+
5CDS-3UTRENST00000567239ENST00000378798NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000393742ENST00000544564NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000393742ENST00000541571NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000393742ENST00000535424NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000393742ENST00000378799NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000393742ENST00000538565NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000393742ENST00000606369NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000393742ENST00000329908NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000393742ENST00000538850NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000393742ENST00000378798NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000566899ENST00000544564NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000566899ENST00000541571NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000566899ENST00000535424NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3CDSENST00000566899ENST00000378799NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000566899ENST00000538565NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000566899ENST00000606369NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000566899ENST00000329908NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000566899ENST00000538850NFAT5chr16

69600277

+IST1chr16

71961517

+
5UTR-3UTRENST00000566899ENST00000378798NFAT5chr16

69600277

+IST1chr16

71961517

+

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FusionProtFeatures for NFAT5_IST1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NFAT5

O94916

IST1

P53990

ESCRT-III-like protein involved in specific functions ofthe ESCRT machinery. Is required for efficient abscission duringcytokinesis, but not for HIV-1 budding. The involvement in the MVBpathway is not established. Involved in recruiting VPS4A and/orVPS4B to the midbody of dividing cells (PubMed:19129479,PubMed:19129480). During late anaphase, involved in nuclearenvelope reassembly and mitotic spindle disassembly together withthe ESCRT-III complex: IST1 acts by mediating the recruitment ofSPAST to the nuclear membrane, leading to microtubule severing(PubMed:26040712). Regulates early endosomal tubulation togetherwith the ESCRT-III complex by mediating the recruitment of SPAST(PubMed:23897888). {ECO:0000269|PubMed:19129479,ECO:0000269|PubMed:19129480, ECO:0000269|PubMed:23897888,ECO:0000269|PubMed:26040712}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for NFAT5_IST1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_NFAT5_ENST00000432919_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_91aa
MPSDFISLLSADLDLESPKSLYSRGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFEELKKKT

>In-frame_NFAT5_ENST00000354436_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_91aa
MPSDFISLLSADLDLESPKSLYSRGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFEELKKKT

>In-frame_NFAT5_ENST00000567239_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_91aa
MPSDFISLLSADLDLESPKSLYSRGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFEELKKKT


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_NFAT5_ENST00000432919_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_273nt
ATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAGGTCCTGGACCCAAGCCA
GAAGCCTCTGCAAAGCTTCCTTCCAGACCTGCAGATAACTATGACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCA
ACTGCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATTGACTTTGATGATCTTTCCCGGAGGTTTGAAGAGCTGAAAAAGAAAACA

>In-frame_NFAT5_ENST00000354436_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_273nt
ATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAGGTCCTGGACCCAAGCCA
GAAGCCTCTGCAAAGCTTCCTTCCAGACCTGCAGATAACTATGACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCA
ACTGCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATTGACTTTGATGATCTTTCCCGGAGGTTTGAAGAGCTGAAAAAGAAAACA

>In-frame_NFAT5_ENST00000567239_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_273nt
ATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAGGTCCTGGACCCAAGCCA
GAAGCCTCTGCAAAGCTTCCTTCCAGACCTGCAGATAACTATGACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCA
ACTGCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATTGACTTTGATGATCTTTCCCGGAGGTTTGAAGAGCTGAAAAAGAAAACA


* Fusion transcript sequences (Full-length transcript).
>In-frame_NFAT5_ENST00000432919_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_1558nt
TGCAACGGAAACTTTTGGCTCCACGAACAGAAAAGCAAGAGCAAAAACTCAGTTAAATGCGTTCTTCCTCCATCTTTGCCTAGTCCAAAA
GGAAAAAAAAAGAAACAGAAAAAAGAAAAACTGTTTGGAAGAGTAGCGTTGAGGTTTGCTTTTTACCTGTTTTTCCTCTAGAACAGCCAG
GTGGATTCACATGATCCAATTTTTTAATTGTCTTCTATGTCCCACTCCGAATAACCCGGATGCCCCAGCACAATCAGAGAGATCGTTTTT
TTTAAAAAAAATTTCAGCCTCCAAAGGTAGGAGGGGAGTGTTAGGGGAGAAAGTACTTTAATTAAAAATCAATAACTCGAGGTTTTTGGG
ATACGGTTTGCCATTTCCTAATTAAGAAATGGGTTTGACAGTCCCTTTGTACACACTGCTATGCAAACCCCAAAGGGTTGGCGGCTGTCC
GGGCGATGACACTCCGGTCCCCTGCGAGACCCCGGGCCAGCCAGGCCCGTCCGCCGCCGGCCTCTGGGGTCCGTCCCCGGCTCGCGCAGA
CCTCTCGCTTCTCTCGGCTCTGTCTCCTGCGCTCAGCTCTGCTCGGGGCCGGCCGCCTCAGGCTCGCCGCCACCAGGTCGTTGCAAATAC
CTTTTCCCTCCCCGGGGCCCCAGCGCGCGGCCACCTCCCAGCCTCCCCCCCTCCCACCCTGGCAGCGGGGCCCTTTCCCGGCTCAGGAAC
AGCAGCAGCCCGGGCCGCGCCGGCAGGAAGCGAGGCCCATGTTGCTGCTGTTCCCTGGCGCGCCTCCCCGCCCTCCGGGGGCCGCCACGG
CTCTTCCGCGCTCCCGGGCACCCCCCTCCGCGCCTGCGCTGTGCCCCACGGGGGCGGGGCTCAGATTCCTGTCAGCGGCGGCGGCGGTGG
CGGCGACCGTCAGTTTTCGCTGAGGAGAAACACGAAACGGACCCTTTGGCTCTCCCCCTTCCCCTTCCCCGTCCTGAACCCCTCTCCTGG
TCACCGAGAATCAGTCCCCGTGGAGTTCCCCCTCCACCTCGCCATCGTTTCCTCGGTCCTCGGCCCAGTGGAAGTCACTACCCTCGAGGA
GGAGGCAGCGGCAGCCGCCCTCGCGTCGCCGCCCCCGGTTCGGTGCCCGCGGTCCCGGAGAGGAGGTGCCGCCGCCACCGCCGCTCCCCC
CCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGC
CCAAGTCCCTCTACTCGCGAGGTCCTGGACCCAAGCCAGAAGCCTCTGCAAAGCTTCCTTCCAGACCTGCAGATAACTATGACAACTTTG
TCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCAACTGCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATTGACTTTGATG
ATCTTTCCCGGAGGTTTGAAGAGCTGAAAAAGAAAACATAGGTCTCTTAAACCAGGCAACTTTCACGTTTTGGGAGTTGAGACTGAGCAA

>In-frame_NFAT5_ENST00000354436_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_668nt
GCGGCGGTGGCGGCGACCGTCAGTTTTCGCTGAGGAGAAACACGAAACGGACCCTTTGGCTCTCCCCCTTCCCCTTCCCCGTCCTGAACC
CCTCTCCTGGTCACCGAGAATCAGTCCCCGTGGAGTTCCCCCTCCACCTCGCCATCGTTTCCTCGGTCCTCGGCCCAGTGGAAGTCACTA
CCCTCGAGGAGGAGGCAGCGGCAGCCGCCCTCGCGTCGCCGCCCCCGGTTCGGTGCCCGCGGTCCCGGAGAGGAGGTGCCGCCGCCACCG
CCGCTCCCCCCCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGAC
CTGGAATCGCCCAAGTCCCTCTACTCGCGAGGTCCTGGACCCAAGCCAGAAGCCTCTGCAAAGCTTCCTTCCAGACCTGCAGATAACTAT
GACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCAACTGCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATT
GACTTTGATGATCTTTCCCGGAGGTTTGAAGAGCTGAAAAAGAAAACATAGGTCTCTTAAACCAGGCAACTTTCACGTTTTGGGAGTTGA

>In-frame_NFAT5_ENST00000567239_chr16_69600277_+_IST1_ENST00000544564_chr16_71961517_+_590nt
CCGTCCTGAACCCCTCTCCTGGTCACCGAGAATCAGTCCCCGTGGAGTTCCCCCTCCACCTCGCCATCGTTTCCTCGGTCCTCGGCCCAG
TGGAAGTCACTACCCTCGAGGAGGAGGCAGCGGCAGCCGCCCTCGCGTCGCCGCCCCCGGTTCGGTGCCCGCGGTCCCGGAGAGGAGGTG
CCGCCGCCACCGCCGCTCCCCCCCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGC
GCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAGGTCCTGGACCCAAGCCAGAAGCCTCTGCAAAGCTTCCTTCCAGACCT
GCAGATAACTATGACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCAACTGCATCTGCTGGTGCCAGCACCTCAGCA
TCTGAAGACATTGACTTTGATGATCTTTCCCGGAGGTTTGAAGAGCTGAAAAAGAAAACATAGGTCTCTTAAACCAGGCAACTTTCACGT


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FusionGenePPI for NFAT5_IST1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
NFAT5NFAT5, FOS, JUN, PRKACA, TRIM25IST1APEH, CHMP1B, ANAPC2, CDC20, FZR1, SPAST, ATXN1, ATP6V1B1, HSPA5, MAT1A, ERGIC1, FN1, VCAM1, ITGA4, BTF3L4, TIMM13, CAPN7, UBQLN1, HEY2, CHMP1A, AP1G2, IQGAP3, MIB2, VPS4A, VPS4B, CLTC, RAB5C, RAB7A, ATP6AP2, TFG, GOLT1B, CHMP4B, NF2, PTAR1, CDH1, USP47, DLD


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for NFAT5_IST1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NFAT5_IST1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource