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Fusion gene ID: 24055 |
FusionGeneSummary for NET1_ACSM3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: NET1_ACSM3 | Fusion gene ID: 24055 | Hgene | Tgene | Gene symbol | NET1 | ACSM3 | Gene ID | 55119 | 6296 |
| Gene name | pre-mRNA processing factor 38B | acyl-CoA synthetase medium chain family member 3 | |
| Synonyms | NET1 | SA|SAH | |
| Cytomap | 1p13.3 | 16p12.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | pre-mRNA-splicing factor 38BPRP38 pre-mRNA processing factor 38 domain containing Bsarcoma antigen NY-SAR-27 | acyl-coenzyme A synthetase ACSM3, mitochondrialSA (rat hypertension-associated) homologSA hypertension-associated homologbutyrate--CoA ligase 3butyryl-coenzyme A synthetase 3middle-chain acyl-CoA synthetase 3protein SA homolog | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | Q7Z628 | Q53FZ2 | |
| Ensembl transtripts involved in fusion gene | ENST00000355029, ENST00000542715, ENST00000380359, ENST00000484741, | ENST00000289416, ENST00000440284, ENST00000450120, ENST00000567387, | |
| Fusion gene scores | * DoF score | 5 X 3 X 5=75 | 3 X 3 X 3=27 |
| # samples | 5 | 3 | |
| ** MAII score | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: NET1 [Title/Abstract] AND ACSM3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | PRAD | TCGA-CH-5752-01A | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000355029 | ENST00000289416 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5CDS-intron | ENST00000355029 | ENST00000440284 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5CDS-intron | ENST00000355029 | ENST00000450120 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5CDS-3UTR | ENST00000355029 | ENST00000567387 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5UTR-3CDS | ENST00000542715 | ENST00000289416 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5UTR-intron | ENST00000542715 | ENST00000440284 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5UTR-intron | ENST00000542715 | ENST00000450120 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| 5UTR-3UTR | ENST00000542715 | ENST00000567387 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-3CDS | ENST00000380359 | ENST00000289416 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-intron | ENST00000380359 | ENST00000440284 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-intron | ENST00000380359 | ENST00000450120 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-3UTR | ENST00000380359 | ENST00000567387 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-3CDS | ENST00000484741 | ENST00000289416 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-intron | ENST00000484741 | ENST00000440284 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-intron | ENST00000484741 | ENST00000450120 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
| intron-3UTR | ENST00000484741 | ENST00000567387 | NET1 | chr10 | 5471192 | + | ACSM3 | chr16 | 20807692 | + |
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FusionProtFeatures for NET1_ACSM3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| NET1 | ACSM3 |
| Acts as guanine nucleotide exchange factor (GEF) forRhoA GTPase. May be involved in activation of the SAPK/JNK pathwayStimulates genotoxic stress-induced RHOB activity in breast cancercells leading to their cell death. {ECO:0000269|PubMed:21373644}. | Has medium-chain fatty acid:CoA ligase activity withbroad substrate specificity (in vitro). Acts on acids from C(4) toC(11) and on the corresponding 3-hydroxy- and 2,3- or 3,4-unsaturated acids (in vitro) (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | NET1 | chr10:5471192 | chr16:20807692 | ENST00000355029 | + | 3 | 12 | 12_19 | 85 | 597 | Motif | Nuclear localization signal |
| Hgene | NET1 | chr10:5471192 | chr16:20807692 | ENST00000355029 | + | 3 | 12 | 66_72 | 85 | 597 | Motif | Nuclear localization signal |
| Hgene | NET1 | chr10:5471192 | chr16:20807692 | ENST00000355029 | + | 3 | 12 | 1_74 | 85 | 597 | Region | Necessary for nuclear localization |
| Tgene | >ACSM3 | chr10:5471192 | chr16:20807692 | ENST00000440284 | + | 0 | 9 | 235_243 | -46 | 439 | Nucleotide binding | ATP |
| Tgene | >ACSM3 | chr10:5471192 | chr16:20807692 | ENST00000440284 | + | 0 | 9 | 374_379 | -46 | 439 | Nucleotide binding | ATP |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000355029 | + | 3 | 12 | 174_356 | 85 | 597 | Domain | DH |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000355029 | + | 3 | 12 | 386_501 | 85 | 597 | Domain | PH |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000380359 | + | 1 | 10 | 174_356 | -52 | 543 | Domain | DH |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000380359 | + | 1 | 10 | 386_501 | -52 | 543 | Domain | PH |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000380359 | + | 1 | 10 | 12_19 | -52 | 543 | Motif | Nuclear localization signal |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000380359 | + | 1 | 10 | 66_72 | -52 | 543 | Motif | Nuclear localization signal |
| Hgene | >NET1 | chr10:5471192 | chr16:20807692 | ENST00000380359 | + | 1 | 10 | 1_74 | -52 | 543 | Region | Necessary for nuclear localization |
| Tgene | ACSM3 | chr10:5471192 | chr16:20807692 | ENST00000289416 | + | 11 | 14 | 235_243 | 518 | 587 | Nucleotide binding | ATP |
| Tgene | ACSM3 | chr10:5471192 | chr16:20807692 | ENST00000289416 | + | 11 | 14 | 374_379 | 518 | 587 | Nucleotide binding | ATP |
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FusionGeneSequence for NET1_ACSM3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_NET1_ENST00000355029_chr10_5471192_+_ACSM3_ENST00000289416_chr16_20807692_+_154aa MEPELAAQKQPRPRRRSRRASGLSTEGATGPSADTSGSELDGRCSLRRGSSFTFLTPGPNWDFTLKRKRREKDDDVVSLSSLDLKVVKAF |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_NET1_ENST00000355029_chr10_5471192_+_ACSM3_ENST00000289416_chr16_20807692_+_462nt ATGGAGCCCGAGCTGGCGGCTCAGAAGCAGCCTCGACCGCGGAGGCGAAGCCGCCGGGCCTCTGGGCTCAGCACGGAGGGAGCGACGGGG CCTTCGGCCGACACCTCCGGGTCGGAGCTGGACGGGAGATGTTCCCTTCGGAGAGGCAGCTCCTTCACATTCTTAACACCTGGCCCCAAC TGGGACTTCACTTTGAAAAGAAAACGCAGAGAGAAAGATGATGATGTTGTAAGCCTTAGCAGCCTTGATCTGAAGGTAGTAAAGGCTTTT GTCGTTCTAAATCCTGATTACAAGTCACATGATCAAGAACAACTAATAAAGGAGATTCAGGAGCATGTTAAAAAAACTACAGCACCTTAC AAATATCCCAGAAAGGTAGAATTTATTCAAGAGCTGCCAAAGACTATCAGTGGGAAGACAAAAAGAAATGAACTGAGGAAGAAAGAATGG |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_NET1_ENST00000355029_chr10_5471192_+_ACSM3_ENST00000289416_chr16_20807692_+_1213nt ATTTTCAAATCCCCGGATGACGGCGGTGGCGGCTGCAGTCCGCTGACAGGCGCTTTCTGCCTGGCAGAGGCTGGCGGGCATCGTGCCCGT CCCTGCCGGTCTCCCGGGCACCCGGCCACCGCCCCACCCCCTCCTCCGTGCCATGGAGCCCGAGCTGGCGGCTCAGAAGCAGCCTCGACC GCGGAGGCGAAGCCGCCGGGCCTCTGGGCTCAGCACGGAGGGAGCGACGGGGCCTTCGGCCGACACCTCCGGGTCGGAGCTGGACGGGAG ATGTTCCCTTCGGAGAGGCAGCTCCTTCACATTCTTAACACCTGGCCCCAACTGGGACTTCACTTTGAAAAGAAAACGCAGAGAGAAAGA TGATGATGTTGTAAGCCTTAGCAGCCTTGATCTGAAGGTAGTAAAGGCTTTTGTCGTTCTAAATCCTGATTACAAGTCACATGATCAAGA ACAACTAATAAAGGAGATTCAGGAGCATGTTAAAAAAACTACAGCACCTTACAAATATCCCAGAAAGGTAGAATTTATTCAAGAGCTGCC AAAGACTATCAGTGGGAAGACAAAAAGAAATGAACTGAGGAAGAAAGAATGGAAGACAATTTAAAGTTGTTTCATTAATTACCATATCTA TAAAACAAACATAGTATCTGTCAATCTCTAGAAACCACAAGATGATGGAGAGGTCATAAAAACTGTGGTAGTATGCTTAGAAACTGTTGA TTTAAAATATCTTGTGGTTATGATATCAGAGGCTAAATTTTGAAATAAAATATTTGGCAAATTCCTCCACATTAGTGTCAATGTTCCTAT CATTTCTTAATATAAAAATAATACCATCAATTGCTGATTAATTTTTAAATGTATAGTATAGAAGCAGTTTCTGAACCAGATCTCTGCTAC ATAGGTTTTCAAACTTTAGTTGACTAATTCTTCTGATATGTTGATATACAAATCAGAACCAATGTTCAAGCCTGAAATAAAACTAAAGAA CTTATAAAAGTTTTTAGAAAAATATAAAATATCAGTTAGAAGATTATGATAATCTCAAAGTACAAGAATCTACCTGAAAATAGACTAGGG ATTTTTATTAGTCACATTTTTTGCAAATAATTTAAAAATAGTTTAGACTTGTTTCAAGGTCTAACTATAAAAGAAGGATCATATACTATT |
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FusionGenePPI for NET1_ACSM3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| NET1 | RHOA, MAGI1, USP11, PRKAB2, DLG1, ELAVL1, WDR83, IL4R, WDYHV1, DCAF7 | ACSM3 | EHMT2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NET1_ACSM3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NET1_ACSM3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | ACSM3 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
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