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Fusion gene ID: 2371 |
FusionGeneSummary for ARHGAP12_SORCS3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ARHGAP12_SORCS3 | Fusion gene ID: 2371 | Hgene | Tgene | Gene symbol | ARHGAP12 | SORCS3 | Gene ID | 94134 | 22986 |
Gene name | Rho GTPase activating protein 12 | sortilin related VPS10 domain containing receptor 3 | |
Synonyms | - | SORCS | |
Cytomap | 10p11.22 | 10q25.1 | |
Type of gene | protein-coding | protein-coding | |
Description | rho GTPase-activating protein 12rho-type GTPase-activating protein 12 | VPS10 domain-containing receptor SorCS3VPS10 domain receptor protein SORCS 3 (SORCS3) | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | Q8IWW6 | Q9UPU3 | |
Ensembl transtripts involved in fusion gene | ENST00000311380, ENST00000375250, ENST00000492028, ENST00000344936, ENST00000396144, ENST00000375245, | ENST00000369701, ENST00000369699, | |
Fusion gene scores | * DoF score | 5 X 5 X 5=125 | 1 X 1 X 1=1 |
# samples | 7 | 1 | |
** MAII score | log2(7/125*10)=-0.836501267717121 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: ARHGAP12 [Title/Abstract] AND SORCS3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | HNSC | TCGA-CN-4727-01A | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000311380 | ENST00000369701 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
5CDS-intron | ENST00000311380 | ENST00000369699 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
Frame-shift | ENST00000375250 | ENST00000369701 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
5CDS-intron | ENST00000375250 | ENST00000369699 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
intron-3CDS | ENST00000492028 | ENST00000369701 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
intron-intron | ENST00000492028 | ENST00000369699 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
Frame-shift | ENST00000344936 | ENST00000369701 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
5CDS-intron | ENST00000344936 | ENST00000369699 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
Frame-shift | ENST00000396144 | ENST00000369701 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
5CDS-intron | ENST00000396144 | ENST00000369699 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
Frame-shift | ENST00000375245 | ENST00000369701 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
5CDS-intron | ENST00000375245 | ENST00000369699 | ARHGAP12 | chr10 | 32197100 | - | SORCS3 | chr10 | 106916896 | + |
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FusionProtFeatures for ARHGAP12_SORCS3 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ARHGAP12 | SORCS3 |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000311380 | - | 1 | 16 | 12_74 | 228 | 795 | Domain | SH3 |
Hgene | ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000344936 | - | 3 | 20 | 12_74 | 228 | 847 | Domain | SH3 |
Hgene | ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375245 | - | 3 | 18 | 12_74 | 228 | 795 | Domain | SH3 |
Hgene | ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375250 | - | 3 | 18 | 12_74 | 228 | 817 | Domain | SH3 |
Hgene | ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000396144 | - | 3 | 19 | 12_74 | 228 | 842 | Domain | SH3 |
Tgene | >SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 827_917 | 494 | 1223 | Domain | PKD |
Tgene | >SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 515_526 | 494 | 1223 | Repeat | Note=BNR 4 |
Tgene | >SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 592_603 | 494 | 1223 | Repeat | Note=BNR 5 |
Tgene | >SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 634_645 | 494 | 1223 | Repeat | Note=BNR 6 |
Tgene | >SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 1147_1222 | 494 | 1223 | Topological domain | Cytoplasmic |
Tgene | >SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 1126_1146 | 494 | 1223 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000311380 | - | 1 | 16 | 265_298 | 228 | 795 | Domain | WW 1 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000311380 | - | 1 | 16 | 358_391 | 228 | 795 | Domain | WW 2 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000311380 | - | 1 | 16 | 463_575 | 228 | 795 | Domain | PH |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000311380 | - | 1 | 16 | 656_844 | 228 | 795 | Domain | Rho-GAP |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000344936 | - | 3 | 20 | 265_298 | 228 | 847 | Domain | WW 1 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000344936 | - | 3 | 20 | 358_391 | 228 | 847 | Domain | WW 2 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000344936 | - | 3 | 20 | 463_575 | 228 | 847 | Domain | PH |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000344936 | - | 3 | 20 | 656_844 | 228 | 847 | Domain | Rho-GAP |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375245 | - | 3 | 18 | 265_298 | 228 | 795 | Domain | WW 1 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375245 | - | 3 | 18 | 358_391 | 228 | 795 | Domain | WW 2 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375245 | - | 3 | 18 | 463_575 | 228 | 795 | Domain | PH |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375245 | - | 3 | 18 | 656_844 | 228 | 795 | Domain | Rho-GAP |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375250 | - | 3 | 18 | 265_298 | 228 | 817 | Domain | WW 1 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375250 | - | 3 | 18 | 358_391 | 228 | 817 | Domain | WW 2 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375250 | - | 3 | 18 | 463_575 | 228 | 817 | Domain | PH |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000375250 | - | 3 | 18 | 656_844 | 228 | 817 | Domain | Rho-GAP |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000396144 | - | 3 | 19 | 265_298 | 228 | 842 | Domain | WW 1 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000396144 | - | 3 | 19 | 358_391 | 228 | 842 | Domain | WW 2 |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000396144 | - | 3 | 19 | 463_575 | 228 | 842 | Domain | PH |
Hgene | >ARHGAP12 | chr10:32197100 | chr10:106916896 | ENST00000396144 | - | 3 | 19 | 656_844 | 228 | 842 | Domain | Rho-GAP |
Tgene | SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 231_242 | 494 | 1223 | Repeat | Note=BNR 1 |
Tgene | SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 279_290 | 494 | 1223 | Repeat | Note=BNR 2 |
Tgene | SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 320_331 | 494 | 1223 | Repeat | Note=BNR 3 |
Tgene | SORCS3 | chr10:32197100 | chr10:106916896 | ENST00000369701 | + | 8 | 27 | 34_1125 | 494 | 1223 | Topological domain | Lumenal |
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FusionGeneSequence for ARHGAP12_SORCS3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_ARHGAP12_ENST00000311380_chr10_32197100_-_SORCS3_ENST00000369701_chr10_106916896_+_957aa MKMADRSGKIIPGQVYIEVEYDYEYEAKDRKIVIKQGERYILVKKTNDDWWQVKPDENSKAFYVPAQYVKEVTRKALMPPVKQVAGLPNN STKIMQSLHLQRSTENVNKLPELSSFGKPSSSVQGTGLIRDANQNFGPSYNQGQTVNLSLDLTHNNGKFNNDSHSPKVSSQNRTRSFGHF PGPEFLDVEKTSFSQEQSCDSAGEGSERIHQDSESGDELSSSSTEQIRVAGIKGIFLANKKVDDQVKTYITYNKGRDWRLLQAPDVDLRG SPVHCLLPFCSLHLHLQLSENPYSSGRISSKETAPGLVVATGNIGPELSYTDIGVFISSDGGNTWRQIFDEEYNVWFLDWGGALVAMKHT PLPVRHLWVSFDEGHSWDKYGFTSVPLFVDGALVEAGMETHIMTVFGHFSLRSEWQLVKVDYKSIFSRHCTKEDYQTWHLLNQGEPCVMG ERKIFKKRKPGAQCALGRDHSGSVVSEPCVCANWDFECDYGYERHGESQCVPAFWYNPASPSKDCSLGQSYLNSTGYRRIVSNNCTDGLR EKYTAKAQMCPGKAPRGLHVVTTDGRLVAEQGHNATFIILMEEGDLQRTNIQLDFGDGIAVSYANFSPIEDGIKHVYKSAGIFQVTAYAE NNLGSDTAVLFLHVVCPVEHVHLRVPFVAIRNKEVNISAVVWPSQLGTLTYFWWFGNSTKPLITLDSSISFTFLAEGTDTITVQVAAGNA LIQDTKEIAVHEYFQSQLLSFSPNLDYHNPDIPEWRKDIGNVIKRALVKVTSVPEDQILIAVFPGLPTSAELFILPPKNLTERRKGNEGD LEQIVETLFNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFLIYKFKRKIPWINIYAQVQHDKEQE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_ARHGAP12_ENST00000311380_chr10_32197100_-_SORCS3_ENST00000369701_chr10_106916896_+_2871nt ATGAAAATGGCTGACAGAAGTGGGAAGATTATTCCAGGACAAGTGTATATTGAGGTGGAATATGATTATGAATATGAAGCAAAGGACAGA AAGATTGTGATAAAACAAGGGGAGAGGTACATCTTGGTGAAAAAGACCAATGATGACTGGTGGCAAGTCAAGCCAGATGAAAACTCCAAA GCGTTTTATGTGCCAGCCCAGTATGTGAAGGAGGTCACGCGCAAAGCTCTCATGCCACCTGTTAAGCAGGTAGCTGGTCTGCCAAATAAC TCCACGAAAATAATGCAGAGTTTGCATCTTCAGAGATCAACAGAAAATGTGAACAAATTGCCTGAGCTTTCAAGTTTCGGAAAGCCATCG TCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTTGGACCCAGTTATAATCAAGGTCAGACTGTCAACCTAAGCCTG GACCTGACCCATAATAACGGAAAGTTTAACAATGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTCATTTGGTCATTTT CCCGGTCCAGAGTTCTTGGATGTAGAGAAAACTAGCTTCTCCCAGGAACAATCTTGTGATTCCGCAGGAGAAGGCTCTGAAAGAATACAT CAAGATTCTGAATCTGGTGATGAACTTAGCAGCAGCTCCACTGAACAGATAAGGGTAGCAGGTATCAAAGGGATATTTCTGGCAAACAAG AAGGTGGACGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGCCTGCTGCAAGCTCCGGATGTGGACCTGAGAGGA AGCCCAGTGCACTGCCTGCTGCCCTTCTGTTCCTTACATCTGCACCTGCAACTCTCTGAAAATCCATATTCCTCAGGAAGAATCTCTAGC AAGGAGACAGCCCCAGGACTTGTGGTGGCTACAGGCAACATTGGCCCGGAGCTCTCATATACTGATATTGGTGTGTTCATCTCCTCCGAT GGGGGCAACACATGGAGACAGATCTTTGATGAAGAGTACAATGTCTGGTTCCTAGACTGGGGTGGTGCCCTCGTGGCCATGAAACACACA CCTCTGCCAGTCAGGCATTTGTGGGTGAGTTTTGATGAGGGCCACTCTTGGGACAAGTATGGTTTCACTTCGGTTCCTCTCTTTGTTGAC GGGGCTCTGGTGGAGGCAGGAATGGAGACCCACATCATGACAGTTTTTGGCCACTTCAGCCTCCGCTCCGAATGGCAATTGGTGAAAGTG GACTACAAATCTATCTTCAGCCGGCATTGCACCAAGGAGGACTATCAGACCTGGCACCTGCTCAATCAGGGAGAGCCTTGTGTCATGGGA GAAAGGAAAATATTCAAGAAACGTAAGCCAGGAGCTCAGTGTGCCCTGGGCCGAGACCACTCAGGATCAGTGGTCTCAGAACCCTGTGTC TGTGCCAATTGGGACTTCGAGTGTGACTATGGGTATGAGAGACATGGGGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAATCCAGCATCC CCATCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGGGTATCGGCGGATTGTGTCCAACAACTGCACAGATGGGCTAAGG GAGAAGTACACCGCCAAGGCCCAGATGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACGACCGATGGGCGGCTGGTGGCAGAG CAGGGGCACAATGCAACTTTCATCATCCTCATGGAGGAGGGTGATCTACAAAGGACAAACATCCAGCTTGACTTTGGGGATGGGATTGCT GTGTCCTACGCAAACTTCAGCCCCATCGAGGACGGCATCAAGCACGTGTATAAGAGTGCGGGGATCTTCCAGGTGACAGCCTATGCAGAG AACAACCTTGGCTCAGACACAGCTGTCCTCTTCCTGCATGTGGTTTGTCCTGTGGAGCATGTTCATCTCCGAGTTCCATTTGTTGCCATA AGAAATAAGGAGGTCAACATCAGTGCAGTCGTGTGGCCCAGTCAACTGGGGACCCTTACCTATTTCTGGTGGTTCGGCAATAGCACAAAG CCTCTCATCACTTTGGACAGCAGCATTTCCTTCACATTCCTTGCAGAAGGAACCGACACCATCACAGTCCAGGTGGCTGCTGGGAATGCC CTCATCCAGGACACAAAAGAGATTGCAGTTCATGAATATTTCCAGTCCCAGCTTTTATCATTCTCTCCTAATCTGGATTACCACAATCCT GACATTCCTGAGTGGAGAAAAGATATTGGCAATGTCATCAAGCGAGCTCTGGTTAAAGTAACCAGTGTCCCAGAGGACCAGATCCTCATT GCCGTGTTTCCTGGTCTCCCCACTTCAGCAGAGCTTTTCATTCTTCCACCCAAGAACCTGACAGAGAGGAGGAAAGGCAATGAAGGGGAC CTGGAACAAATTGTAGAAACACTGTTTAATGCTCTCAACCAAAATTTGGTCCAGTTTGAGCTGAAGCCGGGGGTACAAGTCATTGTGTAT GTCACACAGCTGACGTTAGCTCCATTGGTGGACTCCAGTGCTGGGCACAGCAGCTCAGCCATGCTTATGCTATTATCAGTGGTATTTGTT GGCCTGGCTGTGTTTTTGATCTACAAGTTTAAAAGGAAAATCCCTTGGATTAACATCTATGCTCAAGTCCAACACGACAAGGAGCAGGAG ATGATTGGGTCAGTGAGCCAAAGTGAAAACGCCCCCAAAATCACACTCAGTGACTTTACGGAGCCTGAGGAGCTGCTGGACAAAGAGCTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_ARHGAP12_ENST00000311380_chr10_32197100_-_SORCS3_ENST00000369701_chr10_106916896_+_4751nt GAGAGGTGAATATTATTGAATGAAAATGGCTGACAGAAGTGGGAAGATTATTCCAGGACAAGTGTATATTGAGGTGGAATATGATTATGA ATATGAAGCAAAGGACAGAAAGATTGTGATAAAACAAGGGGAGAGGTACATCTTGGTGAAAAAGACCAATGATGACTGGTGGCAAGTCAA GCCAGATGAAAACTCCAAAGCGTTTTATGTGCCAGCCCAGTATGTGAAGGAGGTCACGCGCAAAGCTCTCATGCCACCTGTTAAGCAGGT AGCTGGTCTGCCAAATAACTCCACGAAAATAATGCAGAGTTTGCATCTTCAGAGATCAACAGAAAATGTGAACAAATTGCCTGAGCTTTC AAGTTTCGGAAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTTGGACCCAGTTATAATCAAGGTCA GACTGTCAACCTAAGCCTGGACCTGACCCATAATAACGGAAAGTTTAACAATGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGAC ACGCTCATTTGGTCATTTTCCCGGTCCAGAGTTCTTGGATGTAGAGAAAACTAGCTTCTCCCAGGAACAATCTTGTGATTCCGCAGGAGA AGGCTCTGAAAGAATACATCAAGATTCTGAATCTGGTGATGAACTTAGCAGCAGCTCCACTGAACAGATAAGGGTAGCAGGTATCAAAGG GATATTTCTGGCAAACAAGAAGGTGGACGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGCCTGCTGCAAGCTCC GGATGTGGACCTGAGAGGAAGCCCAGTGCACTGCCTGCTGCCCTTCTGTTCCTTACATCTGCACCTGCAACTCTCTGAAAATCCATATTC CTCAGGAAGAATCTCTAGCAAGGAGACAGCCCCAGGACTTGTGGTGGCTACAGGCAACATTGGCCCGGAGCTCTCATATACTGATATTGG TGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAGATCTTTGATGAAGAGTACAATGTCTGGTTCCTAGACTGGGGTGGTGCCCT CGTGGCCATGAAACACACACCTCTGCCAGTCAGGCATTTGTGGGTGAGTTTTGATGAGGGCCACTCTTGGGACAAGTATGGTTTCACTTC GGTTCCTCTCTTTGTTGACGGGGCTCTGGTGGAGGCAGGAATGGAGACCCACATCATGACAGTTTTTGGCCACTTCAGCCTCCGCTCCGA ATGGCAATTGGTGAAAGTGGACTACAAATCTATCTTCAGCCGGCATTGCACCAAGGAGGACTATCAGACCTGGCACCTGCTCAATCAGGG AGAGCCTTGTGTCATGGGAGAAAGGAAAATATTCAAGAAACGTAAGCCAGGAGCTCAGTGTGCCCTGGGCCGAGACCACTCAGGATCAGT GGTCTCAGAACCCTGTGTCTGTGCCAATTGGGACTTCGAGTGTGACTATGGGTATGAGAGACATGGGGAGAGCCAGTGTGTCCCAGCTTT CTGGTACAATCCAGCATCCCCATCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGGGTATCGGCGGATTGTGTCCAACAA CTGCACAGATGGGCTAAGGGAGAAGTACACCGCCAAGGCCCAGATGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACGACCGA TGGGCGGCTGGTGGCAGAGCAGGGGCACAATGCAACTTTCATCATCCTCATGGAGGAGGGTGATCTACAAAGGACAAACATCCAGCTTGA CTTTGGGGATGGGATTGCTGTGTCCTACGCAAACTTCAGCCCCATCGAGGACGGCATCAAGCACGTGTATAAGAGTGCGGGGATCTTCCA GGTGACAGCCTATGCAGAGAACAACCTTGGCTCAGACACAGCTGTCCTCTTCCTGCATGTGGTTTGTCCTGTGGAGCATGTTCATCTCCG AGTTCCATTTGTTGCCATAAGAAATAAGGAGGTCAACATCAGTGCAGTCGTGTGGCCCAGTCAACTGGGGACCCTTACCTATTTCTGGTG GTTCGGCAATAGCACAAAGCCTCTCATCACTTTGGACAGCAGCATTTCCTTCACATTCCTTGCAGAAGGAACCGACACCATCACAGTCCA GGTGGCTGCTGGGAATGCCCTCATCCAGGACACAAAAGAGATTGCAGTTCATGAATATTTCCAGTCCCAGCTTTTATCATTCTCTCCTAA TCTGGATTACCACAATCCTGACATTCCTGAGTGGAGAAAAGATATTGGCAATGTCATCAAGCGAGCTCTGGTTAAAGTAACCAGTGTCCC AGAGGACCAGATCCTCATTGCCGTGTTTCCTGGTCTCCCCACTTCAGCAGAGCTTTTCATTCTTCCACCCAAGAACCTGACAGAGAGGAG GAAAGGCAATGAAGGGGACCTGGAACAAATTGTAGAAACACTGTTTAATGCTCTCAACCAAAATTTGGTCCAGTTTGAGCTGAAGCCGGG GGTACAAGTCATTGTGTATGTCACACAGCTGACGTTAGCTCCATTGGTGGACTCCAGTGCTGGGCACAGCAGCTCAGCCATGCTTATGCT ATTATCAGTGGTATTTGTTGGCCTGGCTGTGTTTTTGATCTACAAGTTTAAAAGGAAAATCCCTTGGATTAACATCTATGCTCAAGTCCA ACACGACAAGGAGCAGGAGATGATTGGGTCAGTGAGCCAAAGTGAAAACGCCCCCAAAATCACACTCAGTGACTTTACGGAGCCTGAGGA GCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGGAGGCATTGCCACTATTGCAAACAGCGAAAGCACAAAGGAGATCCCCAACTGCAC TAGTGTTTAATACCAGCAAGCCACGTGGTCAACCACCTTTCTGACTTTTTATTTTTGATGATTACTATTACTATTATTATGGAAAAATTA AAATGTCTTTTTTACCTTTTGTTTACCAAGGGCCCCTTCATAAATAGCAGGCAAATGCCTAGCTTTGGGAGAAAAGGGCATTCTTAGCTG ATTGAAATGAGACAAAGGGAATAAATGGCTGTATTTGTGCTAAGAGCAAAGGATGCATCTTCCCACAGCCTCCTCGCTTTACTCTGCCAT TGGTAGCTTAAAGACTTTCTTTTTCCTTGTGGTCTCCCTTTTTTCAAAATTGAAGTTGGGTTGGCTCTTTGTGAACCTCTCATCCCCACA GCAGAATCACCAACACTCTCCGCTTCCCCCAGCACACACACATACAACACAGATCATTTCCCAGTTAGATCCGCAGGAAGTAGGTTGGTG GGGGTGGATGTAGCTGCAGAAAGCATGCACAACTTTGTGAAAGAGGCCCTGCCTTGTGCATGTCCATAGTGAGGCTACAGATGGCTTATT GTATATAATTACAATGTAAATAGCTTTTTATTTCCTAAGAAATAATTTAATGTTTAGTAAAAAAGAAAACAGAAAAAAGAAAGATGCGTG TGTTGGCTTACGCACTGGCCCTCAGAGCTGACCAACCCGCCAGGCCTGCTCAATGCATTGGGTTTGGATGCTCTCCTGTTGTCTGTCACA CTTAACTCTTGCATCTCCTTGTCCATGCCATAGCTGGTTTCTACTTATGTATATAAAGGGGGGTGGGGGGAGGGGCTTCTCTGGGGCAAT TGATAAAGGAAGGACTCTAGTGACATCATAGAACATGGCAGTCGTTTTTGTTCCAAGAATGATATGAAAGGTGAAGAAGAGGCCCACTAG AGGCTTCATACTGAGACCCAGATGGGGGAAAACAGCTTCCTCTCTAAAAGGAAAAACTTGATATTTATCAGTCTGAGAAAATATTTTTTT CTAAAGAAGGCAGTCAGTGGATCTTAAAATGACAATCTGTTTTTAAATTGGATTCTATGAAAATGCATAATGCTTATGGTGAATTCTCAG GCTATTCTGAGCTCAGAAAAGTCCCCTGGGCACTAGGTAAAGCCCAGTGAATGTCTCTTGGCATGGGAGGAGTTAAAGAGGTTGGAAGGG AAGAGGCATTTGTGGAATTATGAGTTCATGCAAAACTCTCCAGGCCAAGTAGGGGTCTAGCCTTTAATGATATTAGTCAAAGGCAATTTT AGCAAAGCTGTGCTATTTGCTTGTCAGATGTACACAACTTCCTTAAAGTCAAATGTCTGCCTTCAGTTCCCTTAAGGTAGTTCTTGCCTC TGGGGTGAGTGGCTTTCAAAGCCTTTTAGCTTTTCCAGCACCTCAGCCCCTTCACACATTTACACATACCAATTTTTTTCAATAGGGTCA CGTTAAGCCATGCTGTAAGCATTGTTTTTATTTTCAGGCTTAGCCTGAGCACACTTATTTTTGAAAATGATATAATGTATATATATGGGA GGAAAGGCCACATTTTGTACCTGTTAATTTTTGTGGGATGTTGTTCCCATTCTTCTTTGTGAGACAGAGAGAATGTGATATAGAGAAATC TGGCTGGCTACAGTGTAGATCAGTATTAGGAATATTTCTAAAGATCCTGCTTTTTTGTTTCAAGGGTTAAATGGGGCAGACAATTGCAAT ACTTGTACTAAACACTGGAATACAAATGCATGACTCATATCTATATATACAGTATATGTACATATACTGTTCTTGGTTTTATTGTTCCAC |
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FusionGenePPI for ARHGAP12_SORCS3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ARHGAP12 | GRB2, MAPK11, SRPK2, SRPK1, TRIP10, XPO1, MUC5B, BPIFB1, DMBT1, IGHA1 | SORCS3 | SF1, RBM33 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ARHGAP12_SORCS3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARHGAP12_SORCS3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |