|
Fusion gene ID: 23570 |
FusionGeneSummary for NCBP2_FBXL2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: NCBP2_FBXL2 | Fusion gene ID: 23570 | Hgene | Tgene | Gene symbol | NCBP2 | FBXL2 | Gene ID | 22916 | 25827 |
Gene name | nuclear cap binding protein subunit 2 | F-box and leucine rich repeat protein 2 | |
Synonyms | CBC2|CBP20|NIP1|PIG55 | FBL2|FBL3 | |
Cytomap | 3q29 | 3p22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | nuclear cap-binding protein subunit 220 kDa nuclear cap-binding proteinNCBP 20 kDa subunitNCBP interacting protein 1cell proliferation-inducing gene 55 proteinnuclear cap binding protein subunit 2, 20kDnuclear cap binding protein subunit 2, 20kDa | F-box/LRR-repeat protein 2F-box protein FBL2/FBL3F-box protein containing leucine-rich repeats | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P52298 | Q9UKC9 | |
Ensembl transtripts involved in fusion gene | ENST00000467803, ENST00000447325, ENST00000321256, ENST00000427641, ENST00000452404, ENST00000422610, | ENST00000484457, ENST00000538892, ENST00000283627, ENST00000538181, ENST00000446237, ENST00000507198, ENST00000542085, | |
Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 5 X 6 X 2=60 |
# samples | 3 | 6 | |
** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/60*10)=0 | |
Context | PubMed: NCBP2 [Title/Abstract] AND FBXL2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NCBP2 | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 11551508 |
Hgene | NCBP2 | GO:0006446 | regulation of translational initiation | 11551508 |
Hgene | NCBP2 | GO:0045292 | mRNA cis splicing, via spliceosome | 18426921 |
Tgene | FBXL2 | GO:0014066 | regulation of phosphatidylinositol 3-kinase signaling | 23604317 |
Tgene | FBXL2 | GO:0016567 | protein ubiquitination | 23604317 |
Tgene | FBXL2 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 23604317 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA659977 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000467803 | ENST00000484457 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000467803 | ENST00000538892 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3UTR | ENST00000467803 | ENST00000283627 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-intron | ENST00000467803 | ENST00000538181 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000467803 | ENST00000446237 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000467803 | ENST00000507198 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000467803 | ENST00000542085 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000447325 | ENST00000484457 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000447325 | ENST00000538892 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3UTR | ENST00000447325 | ENST00000283627 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-intron | ENST00000447325 | ENST00000538181 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000447325 | ENST00000446237 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000447325 | ENST00000507198 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000447325 | ENST00000542085 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
In-frame | ENST00000321256 | ENST00000484457 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
In-frame | ENST00000321256 | ENST00000538892 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-3UTR | ENST00000321256 | ENST00000283627 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-intron | ENST00000321256 | ENST00000538181 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-5UTR | ENST00000321256 | ENST00000446237 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-5UTR | ENST00000321256 | ENST00000507198 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-5UTR | ENST00000321256 | ENST00000542085 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
In-frame | ENST00000427641 | ENST00000484457 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
In-frame | ENST00000427641 | ENST00000538892 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-3UTR | ENST00000427641 | ENST00000283627 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-intron | ENST00000427641 | ENST00000538181 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-5UTR | ENST00000427641 | ENST00000446237 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-5UTR | ENST00000427641 | ENST00000507198 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
5CDS-5UTR | ENST00000427641 | ENST00000542085 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000452404 | ENST00000484457 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000452404 | ENST00000538892 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3UTR | ENST00000452404 | ENST00000283627 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-intron | ENST00000452404 | ENST00000538181 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000452404 | ENST00000446237 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000452404 | ENST00000507198 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000452404 | ENST00000542085 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000422610 | ENST00000484457 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3CDS | ENST00000422610 | ENST00000538892 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-3UTR | ENST00000422610 | ENST00000283627 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-intron | ENST00000422610 | ENST00000538181 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000422610 | ENST00000446237 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000422610 | ENST00000507198 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
intron-5UTR | ENST00000422610 | ENST00000542085 | NCBP2 | chr3 | 196669297 | - | FBXL2 | chr3 | 33400769 | + |
Top |
FusionProtFeatures for NCBP2_FBXL2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
NCBP2 | FBXL2 |
Component of the cap-binding complex (CBC), which bindsco-transcriptionally to the 5' cap of pre-mRNAs and is involved invarious processes such as pre-mRNA splicing, translationregulation, nonsense-mediated mRNA decay, RNA-mediated genesilencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBCcomplex is involved in mRNA export from the nucleus via itsinteraction with ALYREF/THOC4/ALY, leading to the recruitment ofthe mRNA export machinery to the 5' end of mRNA and to mRNA exportin a 5' to 3' direction through the nuclear pore. The CBC complexis also involved in mediating U snRNA and intronless mRNAs exportfrom the nucleus. The CBC complex is essential for a pioneer roundof mRNA translation, before steady state translation when the CBCcomplex is replaced by cytoplasmic cap-binding protein eIF4E. Thepioneer round of mRNA translation mediated by the CBC complexplays a central role in nonsense-mediated mRNA decay (NMD), NMDonly taking place in mRNAs bound to the CBC complex, but not oneIF4E-bound mRNAs. The CBC complex enhances NMD in mRNAscontaining at least one exon-junction complex (EJC) via itsinteraction with UPF1, promoting the interaction between UPF1 andUPF2. The CBC complex is also involved in 'failsafe' NMD, which isindependent of the EJC complex, while it does not participate inStaufen-mediated mRNA decay (SMD). During cell proliferation, theCBC complex is also involved in microRNAs (miRNAs) biogenesis viaits interaction with SRRT/ARS2, thereby being required for miRNA-mediated RNA interference. The CBC complex also acts as a negativeregulator of PARN, thereby acting as an inhibitor of mRNAdeadenylation. In the CBC complex, NCBP2/CBP20 recognizes andbinds capped RNAs (m7GpppG-capped RNA) but requires NCBP1/CBP80 tostabilize the movement of its N-terminal loop and lock the CBCinto a high affinity cap-binding state with the cap structure. Theconventional cap-binding complex with NCBP2 binds both smallnuclear RNA (snRNA) and messenger (mRNA) and is involved in theirexport from the nucleus (PubMed:26382858).{ECO:0000269|PubMed:11551508, ECO:0000269|PubMed:15361857,ECO:0000269|PubMed:17190602, ECO:0000269|PubMed:17363367,ECO:0000269|PubMed:17873884, ECO:0000269|PubMed:18369367,ECO:0000269|PubMed:19632182, ECO:0000269|PubMed:26382858}. | Calcium-activated substrate recognition component of theSCF (SKP1-cullin-F-box protein) E3 ubiquitin-protein ligasecomplex, SCF(FBXL2), which mediates the ubiquitination andsubsequent proteasomal degradation of target proteins. Unlike manyF-box proteins, FBXL2 does not seem to target phosphodegron withinits substrates but rather calmodulin-binding motifs and is therebyantagonized by calmodulin. This is the case for the cyclins CCND2and CCND3 which polyubiquitination and subsequent degradation areinhibited by calmodulin. Through CCND2 and CCND3 degradationinduces cell-cycle arrest in G(0) (PubMed:22020328,PubMed:22323446). SCF(FBXL2) also mediates PIK3R2 ubiquitinationand proteasomal degradation thereby regulatingphosphatidylinositol 3-kinase signaling and autophagy(PubMed:23604317). PCYT1A monoubiquitination by SCF(FBXL2) andsubsequent degradation regulates synthesis of phosphatidylcholine,which is utilized for formation of membranes and of pulmonarysurfactant (By similarity). {ECO:0000250|UniProtKB:Q8BH16,ECO:0000269|PubMed:22020328, ECO:0000269|PubMed:22323446,ECO:0000269|PubMed:23604317}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for NCBP2_FBXL2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_NCBP2_ENST00000321256_chr3_196669297_-_FBXL2_ENST00000484457_chr3_33400769_+_410aa MSGGLLKALRSDSYVELSQYRDQHFRAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCR NIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQ LEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARN CHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELY >In-frame_NCBP2_ENST00000321256_chr3_196669297_-_FBXL2_ENST00000538892_chr3_33400769_+_342aa MSGGLLKALRSDSYVELSQYRDQHFRAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCR NIEHLNLNGCTKITDSTCYSLSRFCSKLKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRL QILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCL >In-frame_NCBP2_ENST00000427641_chr3_196669297_-_FBXL2_ENST00000484457_chr3_33400769_+_410aa MSGGLLKALRSDSYVELSQYRDQHFRAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCR NIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQ LEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARN CHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELY >In-frame_NCBP2_ENST00000427641_chr3_196669297_-_FBXL2_ENST00000538892_chr3_33400769_+_342aa MSGGLLKALRSDSYVELSQYRDQHFRAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCR NIEHLNLNGCTKITDSTCYSLSRFCSKLKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRL QILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCL |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_NCBP2_ENST00000321256_chr3_196669297_-_FBXL2_ENST00000484457_chr3_33400769_+_1230nt ATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAACATC TTAGCCCTGGATGGAAGCAACTGGCAAAGAATAGATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTCGAAG CGATGCGGTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTGCCGA AACATTGAACATTTGAACCTCAATGGATGCACAAAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAAACAT CTGGATCTGACCTCCTGTGTGTCTATTACAAACAGCTCCTTGAAGGGGATCAGTGAGGGCTGCCGAAACCTGGAGTACCTGAACCTCTCT TGGTGTGATCAGATCACGAAGGATGGCATCGAGGCACTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAGGGGCTGCACACAG TTAGAAGATGAAGCTCTGAAACACATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGATGAA GGTGTGGTGCAGATATGCAGGGGCTGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCC CTGGGTTTGAACTGTCCGCGACTGCAAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCGGAAT TGCCACGAATTGGAGAAGATGGATCTTGAAGAATGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAAACTG CAAGCCCTGAGCCTGTCCCACTGTGAACTCATCACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCTGCGG GTACTGGAGTTGGACAACTGCCTCCTCATCACTGATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCTGTAC GACTGCCAGCAGGTTACCCGTGCAGGCATCAAGCGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGTCACC >In-frame_NCBP2_ENST00000321256_chr3_196669297_-_FBXL2_ENST00000538892_chr3_33400769_+_1026nt ATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAACATC TTAGCCCTGGATGGAAGCAACTGGCAAAGAATAGATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTCGAAG CGATGCGGTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTGCCGA AACATTGAACATTTGAACCTCAATGGATGCACAAAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAAACAT ATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGATGAAGGTGTGGTGCAGATATGCAGGGGC TGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCCCTGGGTTTGAACTGTCCGCGACTG CAAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCGGAATTGCCACGAATTGGAGAAGATGGAT CTTGAAGAATGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAAACTGCAAGCCCTGAGCCTGTCCCACTGT GAACTCATCACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCTGCGGGTACTGGAGTTGGACAACTGCCTC CTCATCACTGATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTGCA GGCATCAAGCGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGTCACCCCACCGACAGCAGTGGCAGGAAGT >In-frame_NCBP2_ENST00000427641_chr3_196669297_-_FBXL2_ENST00000484457_chr3_33400769_+_1230nt ATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAACATC TTAGCCCTGGATGGAAGCAACTGGCAAAGAATAGATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTCGAAG CGATGCGGTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTGCCGA AACATTGAACATTTGAACCTCAATGGATGCACAAAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAAACAT CTGGATCTGACCTCCTGTGTGTCTATTACAAACAGCTCCTTGAAGGGGATCAGTGAGGGCTGCCGAAACCTGGAGTACCTGAACCTCTCT TGGTGTGATCAGATCACGAAGGATGGCATCGAGGCACTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAGGGGCTGCACACAG TTAGAAGATGAAGCTCTGAAACACATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGATGAA GGTGTGGTGCAGATATGCAGGGGCTGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCC CTGGGTTTGAACTGTCCGCGACTGCAAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCGGAAT TGCCACGAATTGGAGAAGATGGATCTTGAAGAATGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAAACTG CAAGCCCTGAGCCTGTCCCACTGTGAACTCATCACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCTGCGG GTACTGGAGTTGGACAACTGCCTCCTCATCACTGATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCTGTAC GACTGCCAGCAGGTTACCCGTGCAGGCATCAAGCGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGTCACC >In-frame_NCBP2_ENST00000427641_chr3_196669297_-_FBXL2_ENST00000538892_chr3_33400769_+_1026nt ATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAACATC TTAGCCCTGGATGGAAGCAACTGGCAAAGAATAGATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTCGAAG CGATGCGGTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTGCCGA AACATTGAACATTTGAACCTCAATGGATGCACAAAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAAACAT ATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGATGAAGGTGTGGTGCAGATATGCAGGGGC TGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCCCTGGGTTTGAACTGTCCGCGACTG CAAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCGGAATTGCCACGAATTGGAGAAGATGGAT CTTGAAGAATGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAAACTGCAAGCCCTGAGCCTGTCCCACTGT GAACTCATCACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCTGCGGGTACTGGAGTTGGACAACTGCCTC CTCATCACTGATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTGCA GGCATCAAGCGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGTCACCCCACCGACAGCAGTGGCAGGAAGT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_NCBP2_ENST00000321256_chr3_196669297_-_FBXL2_ENST00000484457_chr3_33400769_+_3808nt AATGAGATGCTCGCCTCCGCGCGTTTCCGCTTCCGCCATCGCGGACGCAGCCTCGTGCCGGGAGTCGCCGCATTGTGGTCCGCTTCTCTG CACTATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAA CATCTTAGCCCTGGATGGAAGCAACTGGCAAAGAATAGATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTC GAAGCGATGCGGTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTG CCGAAACATTGAACATTTGAACCTCAATGGATGCACAAAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAA ACATCTGGATCTGACCTCCTGTGTGTCTATTACAAACAGCTCCTTGAAGGGGATCAGTGAGGGCTGCCGAAACCTGGAGTACCTGAACCT CTCTTGGTGTGATCAGATCACGAAGGATGGCATCGAGGCACTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAGGGGCTGCAC ACAGTTAGAAGATGAAGCTCTGAAACACATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGA TGAAGGTGTGGTGCAGATATGCAGGGGCTGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTAC AGCCCTGGGTTTGAACTGTCCGCGACTGCAAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCG GAATTGCCACGAATTGGAGAAGATGGATCTTGAAGAATGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAA ACTGCAAGCCCTGAGCCTGTCCCACTGTGAACTCATCACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCT GCGGGTACTGGAGTTGGACAACTGCCTCCTCATCACTGATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCT GTACGACTGCCAGCAGGTTACCCGTGCAGGCATCAAGCGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGT CACCCCACCGACAGCAGTGGCAGGAAGTGGACAGCGACTGTGCAGGTGCTGTGTCATTCTCTGACAGCAGCTGCCTGGGCCCAAGGGGTG ATGAGGCATCCTTTCCTCTAGAAGACCTGAGTCTTCCTGACCGACTCCACCATCACCCAATCTGTTGATTCTCCATTGGGAAAGGCATTT ACAGGTAAAAGACTTCTGTATGGATTGCAGTTACTCTGGTGATAGTTTTCACCTTTATTCTGCTGTGAAACAATCAAATCAAAGCCTTGT GTCAGTTAACACATGACAAGTGGTCTCAATGCAGCTAGGACCATGCCAGAAACCTGGATCTCTTAAGAGATTGGTACCTACCTAGGTACG AAAGTTCTACCCTTGGCATACTCAGCATTCCTCAAAAAGACCATCAGTGTTAGCACAAACTGAGCAGAAAAAATAAGCTGTTGATTTTCT ACCTGATACTTAAGCCAGTGGCCTACTTTAATTCACAATTCCATTTTGATTAGCAGGACTTTTCCACTTTGAAGATAAATAGCAACTTTA TCAAAGTGACTGTACTGCAAATTAATTCATAATGCCTGATAGTTTTATATATAGAGACTTATGTGGAAGGCATGTTAATAGGTTTCCATG AGACACCAAAGAAAAGAGGACTCTATACTGGGTGGAGCAGGGTCTTCACCTTTTTGTTTCTGTCAACTTGTCATATACACCTCCAGGGAC CAAAAACAAAAGCAGCTCGGAGTCTGTGTTGCCTGATTGGAAAGTAGAAGCTCTGGTGTATGCTACAGCACATAACACATTTTTACTAAA GGAAAAAAGCTAATTATGTCCATGCCTCTCGTAAAACTGGGGGGAACCTTAAAGAGAAAGAACTAAGGCTTAAGTTATCTGTAGTATAAT CAATTAGAAGTAATGAATGGATGCATGTAAAATGGATGTGATTTTTTTTCAAGCTTATTTTGAAATCTTAAAAATCAGGTTACACCATAG CTACTCAAAAGTTTTACACACTTAAAACTCAGATCAGTAAGTGTTGGTACCTTTTAGACTCATAAAATTGAATAAACCATTGCAATGCTT TAAAAAAAATTAAGTCAGAGGGTTTTATTGCTATGATTTTATGGCAGACACATCCAAGCAAAACCATTTTCCAAATGCAGACCTTCCTGA TGTTATCTGAAATCTGATAAAATGACCCTACTCTCTGCTGTGGTTCATTCTTGCTCCATGCTGTCCATATTTATGATCTTTATTAAGAAC CTGTCAATCAGTCATCACCACCTTCATTGTAAACTTAGGTGTTCATGGTGGCTGGCCCTTCCAAACAACCACTCCCCCAAACTGAAGGGC CAGAGCTCATGAGAAACTTAAAAGTGAAACGGCAAAAGCAAGATGTGTTCCCATGACTACCAATACCTTTATTAGGCAGTTTTAGAAGTG TTTTTAAGGATATATTATGTCAGCTGCATTCTAGGAAGAGAAGCAGATTATATATATATATAATCTCCCCATAAACGGACTTAGCACAAT TATCATCAGAGTAAGCATTAAAGTCATTTTATTGCCTTATGATATATTCCAGTATTCCTTGGTCTAAAAATTGTGTGGATACCATAGCAG TTAGTTAAATATACATTTATACCCACTGTTTGTTGTGGAAGAGATGATGGGGGAGGAGGACTGATGCAGGAAGCAACTTCAATAAATGAG CATATAACAGACTTGCTTCAGTGATTATGAATTAGTTTAGTTTCTATTAAAAAAAATTAACTTAAGGCTGGCCACGGTGGTTCATGCCTA TAATCCCAGCACTTGGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACACAGTAAAACCCCATCT CTACTGAAAATACAAAAATTAGCCGGGCGTGGTGCTGGGCACCTGTAATCTCAGCTACTCGGGAGGCTGAAGCAGGAGAAATGCTGGAAC CCAGGAGGCGGAGGTGGCAGTGAGCCGAGATTGTGCCATTGCACTCCATCCAGCCCAGGAGACAACAGTGAGACTCCATCATCATCTCAA AACAAAACAAACAAACAAACAAAACAAACCACCAGAGCCTTCTATACATGATTGATTTCTTTTGAGCCAGGATACAACCTATCATCAGTC ACAGCTATTGGACTTGATGCTCAATGATCCATGGCCTCATTTACAAAACAGGAGAACCTCTTGTAAGAAAATCAGGTTTGCAGGCTGGGC ACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCGTGAGATCAGGAGATCAAGACCATCCTGGCTAACAC AGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATAGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGACTGAGG CAGAAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTCC >In-frame_NCBP2_ENST00000321256_chr3_196669297_-_FBXL2_ENST00000538892_chr3_33400769_+_2777nt AATGAGATGCTCGCCTCCGCGCGTTTCCGCTTCCGCCATCGCGGACGCAGCCTCGTGCCGGGAGTCGCCGCATTGTGGTCCGCTTCTCTG CACTATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAA CATCTTAGCCCTGGATGGAAGCAACTGGCAAAGAATAGATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTC GAAGCGATGCGGTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTG CCGAAACATTGAACATTTGAACCTCAATGGATGCACAAAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAA ACATATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGATGAAGGTGTGGTGCAGATATGCAG GGGCTGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCCCTGGGTTTGAACTGTCCGCG ACTGCAAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCGGAATTGCCACGAATTGGAGAAGAT GGATCTTGAAGAATGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAAACTGCAAGCCCTGAGCCTGTCCCA CTGTGAACTCATCACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCTGCGGGTACTGGAGTTGGACAACTG CCTCCTCATCACTGATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCG TGCAGGCATCAAGCGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGTCACCCCACCGACAGCAGTGGCAGG AAGTGGACAGCGACTGTGCAGGTGCTGTGTCATTCTCTGACAGCAGCTGCCTGGGCCCAAGGGGTGATGAGGCATCCTTTCCTCTAGAAG ACCTGAGTCTTCCTGACCGACTCCACCATCACCCAATCTGTTGATTCTCCATTGGGAAAGGCATTTACAGGTAAAAGACTTCTGTATGGA TTGCAGTTACTCTGGTGATAGTTTTCACCTTTATTCTGCTGTGAAACAATCAAATCAAAGCCTTGTGTCAGTTAACACATGACAAGTGGT CTCAATGCAGCTAGGACCATGCCAGAAACCTGGATCTCTTAAGAGATTGGTACCTACCTAGGTACGAAAGTTCTACCCTTGGCATACTCA GCATTCCTCAAAAAGACCATCAGTGTTAGCACAAACTGAGCAGAAAAAATAAGCTGTTGATTTTCTACCTGATACTTAAGCCAGTGGCCT ACTTTAATTCACAATTCCATTTTGATTAGCAGGACTTTTCCACTTTGAAGATAAATAGCAACTTTATCAAAGTGACTGTACTGCAAATTA ATTCATAATGCCTGATAGTTTTATATATAGAGACTTATGTGGAAGGCATGTTAATAGGTTTCCATGAGACACCAAAGAAAAGAGGACTCT ATACTGGGTGGAGCAGGGTCTTCACCTTTTTGTTTCTGTCAACTTGTCATATACACCTCCAGGGACCAAAAACAAAAGCAGCTCGGAGTC TGTGTTGCCTGATTGGAAAGTAGAAGCTCTGGTGTATGCTACAGCACATAACACATTTTTACTAAAGGAAAAAAGCTAATTATGTCCATG CCTCTCGTAAAACTGGGGGGAACCTTAAAGAGAAAGAACTAAGGCTTAAGTTATCTGTAGTATAATCAATTAGAAGTAATGAATGGATGC ATGTAAAATGGATGTGATTTTTTTTCAAGCTTATTTTGAAATCTTAAAAATCAGGTTACACCATAGCTACTCAAAAGTTTTACACACTTA AAACTCAGATCAGTAAGTGTTGGTACCTTTTAGACTCATAAAATTGAATAAACCATTGCAATGCTTTAAAAAAAATTAAGTCAGAGGGTT TTATTGCTATGATTTTATGGCAGACACATCCAAGCAAAACCATTTTCCAAATGCAGACCTTCCTGATGTTATCTGAAATCTGATAAAATG ACCCTACTCTCTGCTGTGGTTCATTCTTGCTCCATGCTGTCCATATTTATGATCTTTATTAAGAACCTGTCAATCAGTCATCACCACCTT CATTGTAAACTTAGGTGTTCATGGTGGCTGGCCCTTCCAAACAACCACTCCCCCAAACTGAAGGGCCAGAGCTCATGAGAAACTTAAAAG TGAAACGGCAAAAGCAAGATGTGTTCCCATGACTACCAATACCTTTATTAGGCAGTTTTAGAAGTGTTTTTAAGGATATATTATGTCAGC TGCATTCTAGGAAGAGAAGCAGATTATATATATATATAATCTCCCCATAAACGGACTTAGCACAATTATCATCAGAGTAAGCATTAAAGT CATTTTATTGCCTTATGATATATTCCAGTATTCCTTGGTCTAAAAATTGTGTGGATACCATAGCAGTTAGTTAAATATACATTTATACCC >In-frame_NCBP2_ENST00000427641_chr3_196669297_-_FBXL2_ENST00000484457_chr3_33400769_+_3771nt ATCGCGGACGCAGCCTCGTGCCGGGAGTCGCCGCATTGTGGTCCGCTTCTCTGCACTATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGC GACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAACATCTTAGCCCTGGATGGAAGCAACTGGCAAAGAATA GATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTCGAAGCGATGCGGTGGATTCCTGAGGAAGCTCAGCTTG CGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTGCCGAAACATTGAACATTTGAACCTCAATGGATGCACA AAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAAACATCTGGATCTGACCTCCTGTGTGTCTATTACAAAC AGCTCCTTGAAGGGGATCAGTGAGGGCTGCCGAAACCTGGAGTACCTGAACCTCTCTTGGTGTGATCAGATCACGAAGGATGGCATCGAG GCACTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAGGGGCTGCACACAGTTAGAAGATGAAGCTCTGAAACACATTCAGAAT TACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCACGTATCACGGATGAAGGTGTGGTGCAGATATGCAGGGGCTGTCACCGG CTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCCCTGGGTTTGAACTGTCCGCGACTGCAAATTTTG GAGGCTGCCCGATGCTCCCATTTGACTGACGCAGGTTTTACACTTTTAGCTCGGAATTGCCACGAATTGGAGAAGATGGATCTTGAAGAA TGCATCCTGATAACCGACAGCACACTCATCCAGCTCTCCATTCACTGTCCTAAACTGCAAGCCCTGAGCCTGTCCCACTGTGAACTCATC ACAGATGATGGGATCCTGCACCTGAGCAACAGTACCTGTGGCCATGAGAGGCTGCGGGTACTGGAGTTGGACAACTGCCTCCTCATCACT GATGTGGCCCTGGAACACCTAGAGAACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTGCAGGCATCAAG CGGATGCGGGCTCAGCTCCCTCATGTCAAAGTCCACGCCTACTTTGCTCCCGTCACCCCACCGACAGCAGTGGCAGGAAGTGGACAGCGA CTGTGCAGGTGCTGTGTCATTCTCTGACAGCAGCTGCCTGGGCCCAAGGGGTGATGAGGCATCCTTTCCTCTAGAAGACCTGAGTCTTCC TGACCGACTCCACCATCACCCAATCTGTTGATTCTCCATTGGGAAAGGCATTTACAGGTAAAAGACTTCTGTATGGATTGCAGTTACTCT GGTGATAGTTTTCACCTTTATTCTGCTGTGAAACAATCAAATCAAAGCCTTGTGTCAGTTAACACATGACAAGTGGTCTCAATGCAGCTA GGACCATGCCAGAAACCTGGATCTCTTAAGAGATTGGTACCTACCTAGGTACGAAAGTTCTACCCTTGGCATACTCAGCATTCCTCAAAA AGACCATCAGTGTTAGCACAAACTGAGCAGAAAAAATAAGCTGTTGATTTTCTACCTGATACTTAAGCCAGTGGCCTACTTTAATTCACA ATTCCATTTTGATTAGCAGGACTTTTCCACTTTGAAGATAAATAGCAACTTTATCAAAGTGACTGTACTGCAAATTAATTCATAATGCCT GATAGTTTTATATATAGAGACTTATGTGGAAGGCATGTTAATAGGTTTCCATGAGACACCAAAGAAAAGAGGACTCTATACTGGGTGGAG CAGGGTCTTCACCTTTTTGTTTCTGTCAACTTGTCATATACACCTCCAGGGACCAAAAACAAAAGCAGCTCGGAGTCTGTGTTGCCTGAT TGGAAAGTAGAAGCTCTGGTGTATGCTACAGCACATAACACATTTTTACTAAAGGAAAAAAGCTAATTATGTCCATGCCTCTCGTAAAAC TGGGGGGAACCTTAAAGAGAAAGAACTAAGGCTTAAGTTATCTGTAGTATAATCAATTAGAAGTAATGAATGGATGCATGTAAAATGGAT GTGATTTTTTTTCAAGCTTATTTTGAAATCTTAAAAATCAGGTTACACCATAGCTACTCAAAAGTTTTACACACTTAAAACTCAGATCAG TAAGTGTTGGTACCTTTTAGACTCATAAAATTGAATAAACCATTGCAATGCTTTAAAAAAAATTAAGTCAGAGGGTTTTATTGCTATGAT TTTATGGCAGACACATCCAAGCAAAACCATTTTCCAAATGCAGACCTTCCTGATGTTATCTGAAATCTGATAAAATGACCCTACTCTCTG CTGTGGTTCATTCTTGCTCCATGCTGTCCATATTTATGATCTTTATTAAGAACCTGTCAATCAGTCATCACCACCTTCATTGTAAACTTA GGTGTTCATGGTGGCTGGCCCTTCCAAACAACCACTCCCCCAAACTGAAGGGCCAGAGCTCATGAGAAACTTAAAAGTGAAACGGCAAAA GCAAGATGTGTTCCCATGACTACCAATACCTTTATTAGGCAGTTTTAGAAGTGTTTTTAAGGATATATTATGTCAGCTGCATTCTAGGAA GAGAAGCAGATTATATATATATATAATCTCCCCATAAACGGACTTAGCACAATTATCATCAGAGTAAGCATTAAAGTCATTTTATTGCCT TATGATATATTCCAGTATTCCTTGGTCTAAAAATTGTGTGGATACCATAGCAGTTAGTTAAATATACATTTATACCCACTGTTTGTTGTG GAAGAGATGATGGGGGAGGAGGACTGATGCAGGAAGCAACTTCAATAAATGAGCATATAACAGACTTGCTTCAGTGATTATGAATTAGTT TAGTTTCTATTAAAAAAAATTAACTTAAGGCTGGCCACGGTGGTTCATGCCTATAATCCCAGCACTTGGGGAGGCCAAGGCGGGTGGATC ACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACACAGTAAAACCCCATCTCTACTGAAAATACAAAAATTAGCCGGGCGTGGTGCTG GGCACCTGTAATCTCAGCTACTCGGGAGGCTGAAGCAGGAGAAATGCTGGAACCCAGGAGGCGGAGGTGGCAGTGAGCCGAGATTGTGCC ATTGCACTCCATCCAGCCCAGGAGACAACAGTGAGACTCCATCATCATCTCAAAACAAAACAAACAAACAAACAAAACAAACCACCAGAG CCTTCTATACATGATTGATTTCTTTTGAGCCAGGATACAACCTATCATCAGTCACAGCTATTGGACTTGATGCTCAATGATCCATGGCCT CATTTACAAAACAGGAGAACCTCTTGTAAGAAAATCAGGTTTGCAGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAG GCAGAGGCGGGCGGATCGTGAGATCAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAT TAGCCGGGCATAGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGACTGAGGCAGAAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCA >In-frame_NCBP2_ENST00000427641_chr3_196669297_-_FBXL2_ENST00000538892_chr3_33400769_+_2740nt ATCGCGGACGCAGCCTCGTGCCGGGAGTCGCCGCATTGTGGTCCGCTTCTCTGCACTATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGC GACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGCTTGGAACATCTTAGCCCTGGATGGAAGCAACTGGCAAAGAATA GATCTTTTTAACTTTCAAACAGATGTAGAGGGTCGAGTGGTGGAAAATATCTCGAAGCGATGCGGTGGATTCCTGAGGAAGCTCAGCTTG CGAGGCTGCATTGGTGTTGGGGATTCCTCCTTGAAGACCTTTGCACAGAACTGCCGAAACATTGAACATTTGAACCTCAATGGATGCACA AAAATCACTGACAGCACGTGTTATAGCCTTAGCAGATTCTGTTCCAAGCTGAAACATATTCAGAATTACTGCCATGAGCTTGTGAGCCTC AACTTGCAGTCCTGCTCACGTATCACGGATGAAGGTGTGGTGCAGATATGCAGGGGCTGTCACCGGCTACAGGCTCTCTGCCTTTCGGGT TGCAGCAACCTCACAGATGCCTCTCTTACAGCCCTGGGTTTGAACTGTCCGCGACTGCAAATTTTGGAGGCTGCCCGATGCTCCCATTTG ACTGACGCAGGTTTTACACTTTTAGCTCGGAATTGCCACGAATTGGAGAAGATGGATCTTGAAGAATGCATCCTGATAACCGACAGCACA CTCATCCAGCTCTCCATTCACTGTCCTAAACTGCAAGCCCTGAGCCTGTCCCACTGTGAACTCATCACAGATGATGGGATCCTGCACCTG AGCAACAGTACCTGTGGCCATGAGAGGCTGCGGGTACTGGAGTTGGACAACTGCCTCCTCATCACTGATGTGGCCCTGGAACACCTAGAG AACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTGCAGGCATCAAGCGGATGCGGGCTCAGCTCCCTCAT GTCAAAGTCCACGCCTACTTTGCTCCCGTCACCCCACCGACAGCAGTGGCAGGAAGTGGACAGCGACTGTGCAGGTGCTGTGTCATTCTC TGACAGCAGCTGCCTGGGCCCAAGGGGTGATGAGGCATCCTTTCCTCTAGAAGACCTGAGTCTTCCTGACCGACTCCACCATCACCCAAT CTGTTGATTCTCCATTGGGAAAGGCATTTACAGGTAAAAGACTTCTGTATGGATTGCAGTTACTCTGGTGATAGTTTTCACCTTTATTCT GCTGTGAAACAATCAAATCAAAGCCTTGTGTCAGTTAACACATGACAAGTGGTCTCAATGCAGCTAGGACCATGCCAGAAACCTGGATCT CTTAAGAGATTGGTACCTACCTAGGTACGAAAGTTCTACCCTTGGCATACTCAGCATTCCTCAAAAAGACCATCAGTGTTAGCACAAACT GAGCAGAAAAAATAAGCTGTTGATTTTCTACCTGATACTTAAGCCAGTGGCCTACTTTAATTCACAATTCCATTTTGATTAGCAGGACTT TTCCACTTTGAAGATAAATAGCAACTTTATCAAAGTGACTGTACTGCAAATTAATTCATAATGCCTGATAGTTTTATATATAGAGACTTA TGTGGAAGGCATGTTAATAGGTTTCCATGAGACACCAAAGAAAAGAGGACTCTATACTGGGTGGAGCAGGGTCTTCACCTTTTTGTTTCT GTCAACTTGTCATATACACCTCCAGGGACCAAAAACAAAAGCAGCTCGGAGTCTGTGTTGCCTGATTGGAAAGTAGAAGCTCTGGTGTAT GCTACAGCACATAACACATTTTTACTAAAGGAAAAAAGCTAATTATGTCCATGCCTCTCGTAAAACTGGGGGGAACCTTAAAGAGAAAGA ACTAAGGCTTAAGTTATCTGTAGTATAATCAATTAGAAGTAATGAATGGATGCATGTAAAATGGATGTGATTTTTTTTCAAGCTTATTTT GAAATCTTAAAAATCAGGTTACACCATAGCTACTCAAAAGTTTTACACACTTAAAACTCAGATCAGTAAGTGTTGGTACCTTTTAGACTC ATAAAATTGAATAAACCATTGCAATGCTTTAAAAAAAATTAAGTCAGAGGGTTTTATTGCTATGATTTTATGGCAGACACATCCAAGCAA AACCATTTTCCAAATGCAGACCTTCCTGATGTTATCTGAAATCTGATAAAATGACCCTACTCTCTGCTGTGGTTCATTCTTGCTCCATGC TGTCCATATTTATGATCTTTATTAAGAACCTGTCAATCAGTCATCACCACCTTCATTGTAAACTTAGGTGTTCATGGTGGCTGGCCCTTC CAAACAACCACTCCCCCAAACTGAAGGGCCAGAGCTCATGAGAAACTTAAAAGTGAAACGGCAAAAGCAAGATGTGTTCCCATGACTACC AATACCTTTATTAGGCAGTTTTAGAAGTGTTTTTAAGGATATATTATGTCAGCTGCATTCTAGGAAGAGAAGCAGATTATATATATATAT AATCTCCCCATAAACGGACTTAGCACAATTATCATCAGAGTAAGCATTAAAGTCATTTTATTGCCTTATGATATATTCCAGTATTCCTTG GTCTAAAAATTGTGTGGATACCATAGCAGTTAGTTAAATATACATTTATACCCACTGTTTGTTGTGGAAGAGATGATGGGGGAGGAGGAC |
Top |
FusionGenePPI for NCBP2_FBXL2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NCBP2 | NCBP1, HNRNPF, HNRNPH1, SF3A2, CUL1, CAND1, DDX39B, UPF1, SMG1, RBM8A, LIN28A, LIN28B, LZTS2, BMI1, ADPRHL2, USP48, SYNCRIP, XPO1, ZBTB48, KPNA2, KPNA3, KPNA4, NUP98, RPL10, STX3, NELFE, ELL, PRPF4B, CBR1, MYC, SNCA, RBM7, MYH7B, UBA5, PPRC1, ICE1, SKIV2L2, KPNA6, PHAX, ZCCHC8, LENG1, TARSL2, NCBP2-AS2, RBM3 | FBXL2 | SKP1, CUL1, APP, CCND2, AURKB, HSP90AA1, PIK3R1, PIK3R2, CUL2, CDC34, UBE2D3, PTPN13, RABGGTB, NLRP3, UBE2D1, UBE2G1, FOXM1, YPEL3, YPEL1, ITPR3, VCP, FBXO3 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for NCBP2_FBXL2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for NCBP2_FBXL2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |