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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23250

FusionGeneSummary for N4BP1_DDX19B

check button Fusion gene summary
Fusion gene informationFusion gene name: N4BP1_DDX19B
Fusion gene ID: 23250
HgeneTgene
Gene symbol

N4BP1

DDX19B

Gene ID

9683

11269

Gene nameNEDD4 binding protein 1DEAD-box helicase 19B
Synonyms-DBP5|DDX19|RNAh
Cytomap

16q12.1

16q22.1

Type of geneprotein-codingprotein-coding
DescriptionNEDD4-binding protein 1ATP-dependent RNA helicase DDX19BATP-dependent RNA helicase DDX19DEAD (Asp-Glu-Ala-As) box polypeptide 19BDEAD (Asp-Glu-Ala-Asp) box polypeptide 19BDEAD box protein 19BDEAD-box RNA helicase DEAD5DEAD-box protein 5DEAD/H (Asp-Glu-Ala-Asp/His) box po
Modification date2018052220180522
UniProtAcc

O75113

Q9UMR2

Ensembl transtripts involved in fusion geneENST00000262384, ENST00000565423, 
ENST00000563392, ENST00000570055, 
ENST00000563206, ENST00000451014, 
ENST00000568625, ENST00000288071, 
ENST00000393657, ENST00000355992, 
Fusion gene scores* DoF score7 X 5 X 4=1405 X 4 X 6=120
# samples 97
** MAII scorelog2(9/140*10)=-0.637429920615292
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/120*10)=-0.777607578663552
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: N4BP1 [Title/Abstract] AND DDX19B [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLUSCTCGA-94-A4VJ-01AN4BP1chr16

48643686

-DDX19Bchr16

70358488

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000262384ENST00000563392N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000570055N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000563206N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000451014N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000568625N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000288071N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000393657N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
5CDS-intronENST00000262384ENST00000355992N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-3CDSENST00000565423ENST00000563392N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000570055N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000563206N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000451014N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000568625N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000288071N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000393657N4BP1chr16

48643686

-DDX19Bchr16

70358488

+
intron-intronENST00000565423ENST00000355992N4BP1chr16

48643686

-DDX19Bchr16

70358488

+

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FusionProtFeatures for N4BP1_DDX19B


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
N4BP1

O75113

DDX19B

Q9UMR2

Inhibitor of the E3 ubiquitin-protein ligase ITCH. Actsby interacting with the second WW domain of ITCH, leading tocompete with ITCH's substrates and impairing ubiquitination ofsubstrates (By similarity). {ECO:0000250}. ATP-dependent RNA helicase involved in mRNA export fromthe nucleus. Rather than unwinding RNA duplexes, DDX19B functionsas a remodeler of ribonucleoprotein particles, whereby proteinsbound to nuclear mRNA are dissociated and replaced by cytoplasmicmRNA binding proteins.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for N4BP1_DDX19B


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for N4BP1_DDX19B


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
N4BP1LSM1, ITCH, AZI2, UBC, CUL3, CDK6, FAM114A1, HYPK, CDH1DDX19BKLHDC2, DCK, GNB2L1, XPO7, RAE1, IKBKG, TERF1, POT1, COPS5, APP, AICDA, CTBP2, MIF4GD, HLA-DQA1, KLK8, RTBDN, IGKC, TF, PLEC, EPPK1, EVPL, C3, ANXA1, SERPINA3, TRIM29, CALML5, GSN, FGB, TGM1, FGG, PPL, APOA1, AKR1B10, TRIM25, IGHG2, IGHG1, LCP1, HLA-DRA, PSME1, TREX2, IQGAP1, SERPINB5, CALML3, MVP, SERPINB4, SERPINB3, SULT2B1, FGA, RNASE7, POF1B, CAPG, LCN2, NARS, IVL, HMOX1, GM2A, SERPINB1, RAB5A, TYMP, STAT3, ACPP, LTF, ANXA8, S100A7, NAGK, SERPINA1, SERPINB2, ALOX15, LGALS1, FCGBP, HAL, HP, NDRG2, ORM1, CRABP2, CFB, IGLL5, ACOX1, SERPINB7, EHD4, ART3, PTCH1, TNF, DDX19A, CSTF2, XPO1, RRM2, NUP35, SCLT1, USP11, CCDC132, SNW1, CDC5L, ALPI, RAB2B, ENSA, HIST1H1B, S100A9, GSDMA, CCM2, IL36RN, CD79A, LGALS7B, CTSV, APOBEC3A, LAMP2, PKM, LGALS7, UBC


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for N4BP1_DDX19B


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for N4BP1_DDX19B


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource