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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23232

FusionGeneSummary for MYRIP_MLH1

check button Fusion gene summary
Fusion gene informationFusion gene name: MYRIP_MLH1
Fusion gene ID: 23232
HgeneTgene
Gene symbol

MYRIP

MLH1

Gene ID

25924

4292

Gene namemyosin VIIA and Rab interacting proteinmutL homolog 1
SynonymsSLAC2-C|SLAC2CCOCA2|FCC2|HNPCC|HNPCC2|hMLH1
Cytomap

3p22.1

3p22.2

Type of geneprotein-codingprotein-coding
Descriptionrab effector MyRIPSlp homologue lacking C2 domainsexophilin-8myosin-VIIa- and Rab-interacting proteinslp homolog lacking C2 domains csynaptotagmin-like protein homologue lacking C2 domains-csynaptotagmin-like protein lacking C2 domains CDNA mismatch repair protein Mlh1mutL homolog 1, colon cancer, nonpolyposis type 2
Modification date2018052320180523
UniProtAcc

Q8NFW9

P40692

Ensembl transtripts involved in fusion geneENST00000444716, ENST00000302541, 
ENST00000425621, ENST00000396217, 
ENST00000459828, ENST00000539167, 
ENST00000536378, ENST00000231790, 
ENST00000458205, ENST00000539477, 
ENST00000455445, ENST00000435176, 
ENST00000492474, 
Fusion gene scores* DoF score3 X 3 X 3=276 X 7 X 3=126
# samples 38
** MAII scorelog2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(8/126*10)=-0.655351828612554
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: MYRIP [Title/Abstract] AND MLH1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationDDR (DNA damage repair) gene involved fusion gene, retained protein feature but frameshift.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVPRADTCGA-KK-A5A1-01AMYRIPchr3

39942417

+MLH1chr3

37089010

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000444716ENST00000536378MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000444716ENST00000231790MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000444716ENST00000458205MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000444716ENST00000539477MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000444716ENST00000455445MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000444716ENST00000435176MYRIPchr3

39942417

+MLH1chr3

37089010

+
5CDS-intronENST00000444716ENST00000492474MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000302541ENST00000536378MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000302541ENST00000231790MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000302541ENST00000458205MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000302541ENST00000539477MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000302541ENST00000455445MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000302541ENST00000435176MYRIPchr3

39942417

+MLH1chr3

37089010

+
5CDS-intronENST00000302541ENST00000492474MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000425621ENST00000536378MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000425621ENST00000231790MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000425621ENST00000458205MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000425621ENST00000539477MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000425621ENST00000455445MYRIPchr3

39942417

+MLH1chr3

37089010

+
Frame-shitENST00000425621ENST00000435176MYRIPchr3

39942417

+MLH1chr3

37089010

+
5CDS-intronENST00000425621ENST00000492474MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-3CDSENST00000396217ENST00000536378MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-3CDSENST00000396217ENST00000231790MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-3CDSENST00000396217ENST00000458205MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-3CDSENST00000396217ENST00000539477MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-3CDSENST00000396217ENST00000455445MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-3CDSENST00000396217ENST00000435176MYRIPchr3

39942417

+MLH1chr3

37089010

+
5UTR-intronENST00000396217ENST00000492474MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000459828ENST00000536378MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000459828ENST00000231790MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000459828ENST00000458205MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000459828ENST00000539477MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000459828ENST00000455445MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000459828ENST00000435176MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-intronENST00000459828ENST00000492474MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000539167ENST00000536378MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000539167ENST00000231790MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000539167ENST00000458205MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000539167ENST00000539477MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000539167ENST00000455445MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-3CDSENST00000539167ENST00000435176MYRIPchr3

39942417

+MLH1chr3

37089010

+
intron-intronENST00000539167ENST00000492474MYRIPchr3

39942417

+MLH1chr3

37089010

+

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FusionProtFeatures for MYRIP_MLH1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MYRIP

Q8NFW9

MLH1

P40692

Heterodimerizes with PMS2 to form MutL alpha, acomponent of the post-replicative DNA mismatch repair system(MMR). DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutSbeta (MSH2-MSH3) binding to a dsDNA mismatch, then MutL alpha isrecruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA issufficient to activate endonuclease activity of PMS2. Itintroduces single-strand breaks near the mismatch and thusgenerates new entry points for the exonuclease EXO1 to degrade thestrand containing the mismatch. DNA methylation would preventcleavage and therefore assure that only the newly mutated DNAstrand is going to be corrected. MutL alpha (MLH1-PMS2) interactsphysically with the clamp loader subunits of DNA polymerase III,suggesting that it may play a role to recruit the DNA polymeraseIII to the site of the MMR. Also implicated in DNA damagesignaling, a process which induces cell cycle arrest and can leadto apoptosis in case of major DNA damages. Heterodimerizes withMLH3 to form MutL gamma which plays a role in meiosis.{ECO:0000269|PubMed:16873062, ECO:0000269|PubMed:18206974,ECO:0000269|PubMed:20020535, ECO:0000269|PubMed:21120944,ECO:0000269|PubMed:9311737}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for MYRIP_MLH1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for MYRIP_MLH1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
MYRIPRAB27A, C1orf216MLH1AP2B1, TRIM29, ZC3H11A, FRMD6, UBOX5, BLM, ATM, BRCA1, MRE11A, MSH2, MSH6, NBN, RAD50, RFC1, MYC, PMS2, MLH3, PMS1, MSH4, EXO1, MBD4, BRIP1, MSH3, SMC1A, XRN1, PSD3, UBC, UBAP2L, YLPM1, PRKDC, KPNA2, KPNB1, RUVBL1, RUVBL2, FAN1, PPP2R1A, PPP2R2A, PPP2R2B, PPP3CB, PPP3CC, PPP2R2D, AIFM1, PIK3C2A, AMOT, ATAD3A, DOCK7, PYGB, ATP5A1, ATAD3B, WDR61, BARD1, BACH1, FANCD2, POLH, SPRTN, DDX47, TRIM23, PARP12, RAD23B, RAPGEFL1, ANXA6, ARAF, CAPN5, CTSB, GABARAP, MAP2K6, NDRG1, PTPRH, STAP2, TXN2, ZER1, FLNB, ACTG1, ACTG2, ANXA2, CKAP4, DES, MYL6, PARVA, SPTAN1, TMSB4X, FBXO32, SQSTM1, EIF2A, EEF1G, EEF2, NT5C3B, APRT, LGALS4, MUC2, IGKC, FCGBP, ABHD16A, ABCC3, AGR2, ALDOA, ASS1, ELP6, CAB39L, CKB, EXOC3, GSTP1, ACER3, PTGDS, SEC61A1, SELENBP1, SERPINF1, VAMP8, PCNA, MMS19, TXN, ATF2, ORC4, MYOG, PSMA1, CXorf57, SPERT, API5, SPTBN2, USP5, ZNF224, NTRK1, CAPZA2, LYST, CTTN, HDLBP, SLC25A1, PSMD6, FKBP8, INO80, PLXNA3, ELMO2, NANP, CASP3, SNW1, AES, CCDC33, CDCA7L, CEP76, KIAA1377, LY96, MAGEA8, ZBED1, HDAC6, MCM9, MCM8


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MYRIP_MLH1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MYRIP_MLH1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneMLH1C1333991Hereditary Non-Polyposis Colon Cancer Type 252CTD_human;UNIPROT
TgeneMLH1C1527249Colorectal Cancer6UNIPROT
TgeneMLH1C0009405Hereditary Nonpolyposis Colorectal Neoplasms5CTD_human
TgeneMLH1C0009404Colorectal Neoplasms3CTD_human
TgeneMLH1C0265325Turcot syndrome (disorder)2CTD_human;ORPHANET;UNIPROT
TgeneMLH1C0009375Colonic Neoplasms1CTD_human
TgeneMLH1C0024299Lymphoma1CTD_human;HPO
TgeneMLH1C0027627Neoplasm Metastasis1CTD_human
TgeneMLH1C0033578Prostatic Neoplasms1CTD_human
TgeneMLH1C0919267ovarian neoplasm1CTD_human