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Fusion gene ID: 23140 |
FusionGeneSummary for MYO1D_PLA2G6 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MYO1D_PLA2G6 | Fusion gene ID: 23140 | Hgene | Tgene | Gene symbol | MYO1D | PLA2G6 | Gene ID | 4642 | 8398 |
| Gene name | myosin ID | phospholipase A2 group VI | |
| Synonyms | PPP1R108|myr4 | CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta | |
| Cytomap | 17q11.2 | 22q13.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | unconventional myosin-Idmyosin-I gammaprotein phosphatase 1, regulatory subunit 108 | 85/88 kDa calcium-independent phospholipase A285 kDa calcium-independent phospholipase A2GVI PLA2iPLA2-betaintracellular membrane-associated calcium-independent phospholipase A2 betaneurodegeneration with brain iron accumulation 2patatin-like phosph | |
| Modification date | 20180519 | 20180522 | |
| UniProtAcc | O94832 | O60733 | |
| Ensembl transtripts involved in fusion gene | ENST00000318217, ENST00000394649, ENST00000579584, ENST00000584232, ENST00000583621, | ENST00000332509, ENST00000335539, ENST00000402064, ENST00000490473, ENST00000436218, ENST00000447598, ENST00000435484, ENST00000417303, | |
| Fusion gene scores | * DoF score | 13 X 7 X 8=728 | 7 X 7 X 7=343 |
| # samples | 16 | 8 | |
| ** MAII score | log2(16/728*10)=-2.18586654531133 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/343*10)=-2.10013667128545 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: MYO1D [Title/Abstract] AND PLA2G6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MYO1D | GO:0010923 | negative regulation of phosphatase activity | 19389623 |
| Tgene | PLA2G6 | GO:0019731 | antibacterial humoral response | 18714013 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-38-4630-01A | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000318217 | ENST00000332509 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000318217 | ENST00000335539 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000318217 | ENST00000402064 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-intron | ENST00000318217 | ENST00000490473 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000318217 | ENST00000436218 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000318217 | ENST00000447598 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000318217 | ENST00000435484 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000318217 | ENST00000417303 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000332509 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000335539 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000402064 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-intron | ENST00000394649 | ENST00000490473 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000436218 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000447598 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000435484 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000394649 | ENST00000417303 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000332509 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000335539 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000402064 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-intron | ENST00000579584 | ENST00000490473 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000436218 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000447598 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000435484 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000579584 | ENST00000417303 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000332509 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000335539 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000402064 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-intron | ENST00000584232 | ENST00000490473 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000436218 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000447598 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000435484 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| intron-5UTR | ENST00000584232 | ENST00000417303 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000332509 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000335539 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000402064 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-intron | ENST00000583621 | ENST00000490473 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000436218 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000447598 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000435484 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
| 5CDS-5UTR | ENST00000583621 | ENST00000417303 | MYO1D | chr17 | 31203796 | - | PLA2G6 | chr22 | 38565478 | - |
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FusionProtFeatures for MYO1D_PLA2G6 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MYO1D | PLA2G6 |
| Myosins are actin-based motor molecules with ATPaseactivity. Unconventional myosins serve in intracellular movements.Their highly divergent tails are presumed to bind to membranouscompartments, which would be moved relative to actin filaments (Bysimilarity). {ECO:0000250}. | Catalyzes the release of fatty acids from phospholipids.It has been implicated in normal phospholipid remodeling, nitricoxide-induced or vasopressin-induced arachidonic acid release andin leukotriene and prostaglandin production. May participate infas mediated apoptosis and in regulating transmembrane ion flux inglucose-stimulated B-cells. Has a role in cardiolipin (CL)deacylation. Required for both speed and directionality ofmonocyte MCP1/CCL2-induced chemotaxis through regulation of F-actin polymerization at the pseudopods. Isoform ankyrin-iPLA2-1 and isoform ankyrin-iPLA2-2,which lack the catalytic domain, are probably involved in thenegative regulation of iPLA2 activity. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MYO1D_PLA2G6 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MYO1D_PLA2G6 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| MYO1D | ILK, PELO, SIRT7, FBXO25, CUL1, LRRK2, UBASH3B, SHC1, ATP6V1B1, ECT2, MDC1, PAXIP1, PAN2, CCDC8, EGFR, DAPK1, PEX19, VSIG4, UBB, TBC1D9B, PTEN, ZNF746, SSH1, SSH2, PSMC4, DKK3, FBXO40, TOR1AIP2, BTD, HAVCR2, EID1, NEXN, SCN3B, SSSCA1, CDH5, DNAI2, PPP6R2, LSP1, BBS7, COX15, DLST, PDHA1 | PLA2G6 | BAG3, PLA2G6, CALM1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MYO1D_PLA2G6 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | PLA2G6 | O60733 | DB01103 | Quinacrine | 85/88 kDa calcium-independent phospholipase A2 | small molecule | approved|investigational |
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RelatedDiseases for MYO1D_PLA2G6 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | MYO1D | C0004352 | Autistic Disorder | 1 | CTD_human |
| Tgene | PLA2G6 | C0270724 | Infantile Neuroaxonal Dystrophy | 2 | CTD_human;ORPHANET;UNIPROT |
| Tgene | PLA2G6 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Tgene | PLA2G6 | C0027960 | Nevus | 1 | CTD_human |
| Tgene | PLA2G6 | C0033975 | Psychotic Disorders | 1 | PSYGENET |
| Tgene | PLA2G6 | C0036341 | Schizophrenia | 1 | PSYGENET |
| Tgene | PLA2G6 | C0349204 | Nonorganic psychosis | 1 | PSYGENET |
| Tgene | PLA2G6 | C1857747 | NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 2 (disorder) | 1 | CTD_human;UNIPROT |
| Tgene | PLA2G6 | C2751842 | PARKINSON DISEASE 14, AUTOSOMAL RECESSIVE | 1 | CTD_human;ORPHANET;UNIPROT |
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