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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23027

FusionGeneSummary for MYH9_SLC44A4

check button Fusion gene summary
Fusion gene informationFusion gene name: MYH9_SLC44A4
Fusion gene ID: 23027
HgeneTgene
Gene symbol

MYH9

SLC44A4

Gene ID

4627

80736

Gene namemyosin heavy chain 9solute carrier family 44 member 4
SynonymsBDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCAC6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1
Cytomap

22q12.3

6p21.33

Type of geneprotein-codingprotein-coding
Descriptionmyosin-9cellular myosin heavy chain, type Amyosin, heavy chain 9, non-musclenon-muscle myosin heavy chain 9non-muscle myosin heavy chain Anon-muscle myosin heavy chain IIanon-muscle myosin heavy polypeptide 9nonmuscle myosin heavy chain II-Acholine transporter-like protein 4testicular tissue protein Li 48thiamine pyrophosphate transporterthiamine pyrophosphate transporter 1
Modification date2018052220180409
UniProtAcc

P35579

Q53GD3

Ensembl transtripts involved in fusion geneENST00000216181, ENST00000475726, 
ENST00000401701, 
ENST00000229729, 
ENST00000544672, ENST00000375562, 
ENST00000465707, ENST00000417894, 
ENST00000550821, ENST00000550401, 
ENST00000492911, ENST00000453831, 
ENST00000546461, ENST00000551168, 
ENST00000495620, ENST00000425238, 
ENST00000548188, ENST00000549663, 
ENST00000469478, ENST00000415517, 
ENST00000547288, ENST00000547493, 
ENST00000463111, ENST00000383379, 
ENST00000547684, ENST00000549677, 
ENST00000497745, ENST00000366281, 
ENST00000442152, ENST00000553147, 
ENST00000553121, ENST00000495181, 
Fusion gene scores* DoF score36 X 33 X 15=178206 X 6 X 5=180
# samples 506
** MAII scorelog2(50/17820*10)=-5.1554254317472
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/180*10)=-1.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: MYH9 [Title/Abstract] AND SLC44A4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMYH9

GO:0001525

angiogenesis

16403913

HgeneMYH9

GO:0006509

membrane protein ectodomain proteolysis

16186248

HgeneMYH9

GO:0030048

actin filament-based movement

12237319|15845534

HgeneMYH9

GO:0031032

actomyosin structure organization

24072716

TgeneSLC44A4

GO:0030974

thiamine pyrophosphate transmembrane transport

24379411


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BI026665MYH9chr22

36727986

-SLC44A4chr6

3171501

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000216181ENST00000229729MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000544672MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000375562MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000465707MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000417894MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000550821MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000550401MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000492911MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000453831MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000546461MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000551168MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000495620MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000425238MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000548188MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000549663MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000469478MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000415517MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000547288MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000547493MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000463111MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000383379MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000547684MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000549677MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000497745MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000366281MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000442152MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000553147MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000553121MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000216181ENST00000495181MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000229729MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000544672MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000375562MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000465707MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000417894MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000550821MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000550401MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000492911MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000453831MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000546461MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000551168MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000495620MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000425238MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000548188MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000549663MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000469478MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000415517MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000547288MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000547493MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000463111MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000383379MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000547684MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000549677MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000497745MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000366281MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000442152MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000553147MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000553121MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000475726ENST00000495181MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000229729MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000544672MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000375562MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000465707MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000417894MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000550821MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000550401MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000492911MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000453831MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000546461MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000551168MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000495620MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000425238MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000548188MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000549663MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000469478MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000415517MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000547288MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000547493MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000463111MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000383379MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000547684MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000549677MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000497745MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000366281MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000442152MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000553147MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000553121MYH9chr22

36727986

-SLC44A4chr6

3171501

-
intron-intronENST00000401701ENST00000495181MYH9chr22

36727986

-SLC44A4chr6

3171501

-

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FusionProtFeatures for MYH9_SLC44A4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MYH9

P35579

SLC44A4

Q53GD3

Cellular myosin that appears to play a role incytokinesis, cell shape, and specialized functions such assecretion and capping. During cell spreading, plays an importantrole in cytoskeleton reorganization, focal contacts formation (inthe margins but not the central part of spreading cells), andlamellipodial retraction; this function is mechanicallyantagonized by MYH10. {ECO:0000269|PubMed:20052411}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for MYH9_SLC44A4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for MYH9_SLC44A4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MYH9_SLC44A4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneMYH9P35579DB11638ArtenimolMyosin-9small moleculeapproved|investigational

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RelatedDiseases for MYH9_SLC44A4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneMYH9C0403445Fechtner syndrome (disorder)9UNIPROT
HgeneMYH9C0398641Epstein syndrome (disorder)7UNIPROT
HgeneMYH9C0340978May-Hegglin anomaly6UNIPROT
HgeneMYH9C0022661Kidney Failure, Chronic2CTD_human
HgeneMYH9C1854520SEBASTIAN SYNDROME2CTD_human;ORPHANET;UNIPROT
HgeneMYH9C0017668Focal glomerulosclerosis1CTD_human
HgeneMYH9C0020544Renal hypertension1CTD_human
HgeneMYH9C0027706Hereditary nephritis1CTD_human
HgeneMYH9C0036341Schizophrenia1PSYGENET
HgeneMYH9C1863659DEAFNESS, AUTOSOMAL DOMINANT 171UNIPROT
HgeneMYH9C2673482Increased susceptibility to schizophrenia1PSYGENET