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Fusion gene ID: 22478 |
FusionGeneSummary for MRPL27_EFCAB3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MRPL27_EFCAB3 | Fusion gene ID: 22478 | Hgene | Tgene | Gene symbol | MRPL27 | EFCAB3 | Gene ID | 51264 | 146779 |
| Gene name | mitochondrial ribosomal protein L27 | EF-hand calcium binding domain 3 | |
| Synonyms | L27mt | - | |
| Cytomap | 17q21.33 | 17q23.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | 39S ribosomal protein L27, mitochondrialMRP-L27mitochondrial large ribosomal subunit protein bL27m | EF-hand calcium-binding domain-containing protein 3 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q9P0M9 | Q8N7B9 | |
| Ensembl transtripts involved in fusion gene | ENST00000507088, ENST00000225969, ENST00000503633, ENST00000442592, ENST00000511860, | ENST00000450662, ENST00000305286, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 7 X 7 X 2=98 |
| # samples | 1 | 8 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(8/98*10)=-0.292781749227846 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: MRPL27 [Title/Abstract] AND EFCAB3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | GBM | TCGA-06-0882-01A | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000507088 | ENST00000450662 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| 5CDS-intron | ENST00000507088 | ENST00000305286 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| Frame-shift | ENST00000225969 | ENST00000450662 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| 5CDS-intron | ENST00000225969 | ENST00000305286 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| In-frame | ENST00000503633 | ENST00000450662 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| 5CDS-intron | ENST00000503633 | ENST00000305286 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| intron-3CDS | ENST00000442592 | ENST00000450662 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| intron-intron | ENST00000442592 | ENST00000305286 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| Frame-shift | ENST00000511860 | ENST00000450662 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
| 5CDS-intron | ENST00000511860 | ENST00000305286 | MRPL27 | chr17 | 48447393 | - | EFCAB3 | chr17 | 60455329 | + |
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FusionProtFeatures for MRPL27_EFCAB3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MRPL27 | EFCAB3 |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MRPL27_EFCAB3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_MRPL27_ENST00000503633_chr17_48447393_-_EFCAB3_ENST00000450662_chr17_60455329_+_541aa MASVVLALRTRTAVTSLLSPTPATALAVRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHQKEWXLCISX KLQMILKTESLATWQFQKLNQNLSXILXQKYPSPTIKGIETYQDLFNANYNTKKRSXVLHKWQLSKMPTTSSTRTKLAVLISMDXCALXL SWEXIXPSMMSIMNXNVLILIEMGRXTSQTLSRFXQIRISSSRQWFQKRRPVXIWLATQESYCLKSYQGFXRLQPYPESLXXKXXAISKE NSSILAQECCGVPTLWAMEKGHLSQTYAHLQAQAWLPLLMLPGLQXXKKRIYLNFLKSSRDAIPVQIAHIQKYPSFHCSLMWMGWXWESH SKTCRNXRCXEXRSLCISLRIIFSIKETGKHRQQIXSLWTLPQVIQITSSPLIKCSRKSRLVQWPMQLLLNNMXRELLIPIIXELPLNTE KRCXTSGRRSEGIXLGWTLEMSPFMTPFLLIHGPGMFAKNYFLLRTXGYMMPMXIEIPPITPDPLPHQIPVNVTQTQEEKENGKVXRDFN |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_MRPL27_ENST00000503633_chr17_48447393_-_EFCAB3_ENST00000450662_chr17_60455329_+_1625nt ATGGCGTCGGTGGTGTTGGCGCTGAGGACCCGGACAGCCGTTACATCCTTGCTAAGCCCCACTCCGGCTACAGCTCTTGCTGTCAGATAC GCATCCAAGAAGTCGGGTGGTAGCTCCAAAAACCTCGGTGGAAAGTCATCAGGCAGACGCCAAGGCATTAAGAAAATGGAAGGTCACTAT GTTCATGCTGGGAACATCATTGCAACACAGCGCCATTTCCGCTGGCACCCAGGTGCCCATCAAAAGGAATGGTGACTCTGCATAAGTTGA AAACTGCAAATGATATTAAAGACAGAGTCACTGGCCACATGGCAGTTTCAGAAATTAAACCAAAACTTAAGCTGAATCCTCTAACAAAAG TACCCATCTCCCACAATAAAAGGGATAGAGACTTACCAGGATCTCTTCAATGCCAATTACAACACAAAGAAAAGAAGCTAAGTGCTTCAC AAATGGCAGCTTTCCAAGATGCCTACAACTTCTTCTACAAGGACAAAACTGGCTGTATTGATTTCCATGGACTGATGTGCACTGTAGCTA AGCTGGGAATGAATCTGACCAAGCATGATGTCTATAATGAATTGAAATGTGCTGATATTGATCGAGATGGGAAGGTGAACTTCTCAGACT TTATCAAGGTTCTAACAGATAAGAATCTCTTCCTCAAGGCAGTGGTTCCAGAAAAGGAGACCTGTTTAGATTTGGCTGGCAACCCAGGAA TCCTATTGTTTGAAATCCTATCAAGGCTTCTAGAGACTTCAGCCCTACCCAGAAAGTCTATAATAGAAATAGTAAGCTATTTCCAAAGAA AATTCCAGCATACTGGCCCAGGAATGTTGTGGAGTCCCTACACTATGGGCTATGGAAAAAGGACACTTAAGCCAGACATATGCACACCTC CAAGCTCAAGCATGGCTGCCTTTGCTAATGCTGCCCGGATTGCAATAATGAAAGAAAAGGATTTATTTAAATTTCTTGAAGAGCTCAAGA GATGCAATTCCGGTTCAGATAGCCCATATTCAAAAATACCCATCTTTCCATTGTTCCCTAATGTGGATGGGGTGGTGATGGGAAAGCCAT TCAAAGACATGCAGAAATTAGAGATGCTAAGAATAAAGGAGCCTTTGCATTTCTTTGAGGATTATTTTTTCCATAAAAGAGACTGGAAAA CACAGGCAGCAAATATAAAGTCTATGGACCCTGCCTCAGGTTATTCAAATAACATCTTCACCATTGATCAAATGCTCAAGAAAAAGCAGA CTTGTACAGTGGCCGATGCAACTGCTATTAAACAACATGTGAAGAGAGCTACTGATACCTATAATTTAGGAATTGCCCTTGAACACCGAA AAGAGATGCTAAACCTCTGGCAGAAGATCCGAGGGGATTTGATTGGGATGGACTCTAGAAATGAGTCCTTTTATGACACCTTTTCTACTT ATACATGGTCCTGGAATGTTTGCCAAGAATTACTTTCTCCTAAGGACTTAAGGTTATATGATGCCTATGTGAATAGAAATTCCTCCCATA ACTCCAGATCCTCTTCCTCATCAGATACCAGTGAATGTTACACAGACTCAGGAAGAAAAAGAAAACGGAAAGGTTTAAAGGGATTTCAAC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_MRPL27_ENST00000503633_chr17_48447393_-_EFCAB3_ENST00000450662_chr17_60455329_+_1798nt GAGACCGGAAGTGAGTGATCGAAAGCATGGCGTCGGTGGTGTTGGCGCTGAGGACCCGGACAGCCGTTACATCCTTGCTAAGCCCCACTC CGGCTACAGCTCTTGCTGTCAGATACGCATCCAAGAAGTCGGGTGGTAGCTCCAAAAACCTCGGTGGAAAGTCATCAGGCAGACGCCAAG GCATTAAGAAAATGGAAGGTCACTATGTTCATGCTGGGAACATCATTGCAACACAGCGCCATTTCCGCTGGCACCCAGGTGCCCATCAAA AGGAATGGTGACTCTGCATAAGTTGAAAACTGCAAATGATATTAAAGACAGAGTCACTGGCCACATGGCAGTTTCAGAAATTAAACCAAA ACTTAAGCTGAATCCTCTAACAAAAGTACCCATCTCCCACAATAAAAGGGATAGAGACTTACCAGGATCTCTTCAATGCCAATTACAACA CAAAGAAAAGAAGCTAAGTGCTTCACAAATGGCAGCTTTCCAAGATGCCTACAACTTCTTCTACAAGGACAAAACTGGCTGTATTGATTT CCATGGACTGATGTGCACTGTAGCTAAGCTGGGAATGAATCTGACCAAGCATGATGTCTATAATGAATTGAAATGTGCTGATATTGATCG AGATGGGAAGGTGAACTTCTCAGACTTTATCAAGGTTCTAACAGATAAGAATCTCTTCCTCAAGGCAGTGGTTCCAGAAAAGGAGACCTG TTTAGATTTGGCTGGCAACCCAGGAATCCTATTGTTTGAAATCCTATCAAGGCTTCTAGAGACTTCAGCCCTACCCAGAAAGTCTATAAT AGAAATAGTAAGCTATTTCCAAAGAAAATTCCAGCATACTGGCCCAGGAATGTTGTGGAGTCCCTACACTATGGGCTATGGAAAAAGGAC ACTTAAGCCAGACATATGCACACCTCCAAGCTCAAGCATGGCTGCCTTTGCTAATGCTGCCCGGATTGCAATAATGAAAGAAAAGGATTT ATTTAAATTTCTTGAAGAGCTCAAGAGATGCAATTCCGGTTCAGATAGCCCATATTCAAAAATACCCATCTTTCCATTGTTCCCTAATGT GGATGGGGTGGTGATGGGAAAGCCATTCAAAGACATGCAGAAATTAGAGATGCTAAGAATAAAGGAGCCTTTGCATTTCTTTGAGGATTA TTTTTTCCATAAAAGAGACTGGAAAACACAGGCAGCAAATATAAAGTCTATGGACCCTGCCTCAGGTTATTCAAATAACATCTTCACCAT TGATCAAATGCTCAAGAAAAAGCAGACTTGTACAGTGGCCGATGCAACTGCTATTAAACAACATGTGAAGAGAGCTACTGATACCTATAA TTTAGGAATTGCCCTTGAACACCGAAAAGAGATGCTAAACCTCTGGCAGAAGATCCGAGGGGATTTGATTGGGATGGACTCTAGAAATGA GTCCTTTTATGACACCTTTTCTACTTATACATGGTCCTGGAATGTTTGCCAAGAATTACTTTCTCCTAAGGACTTAAGGTTATATGATGC CTATGTGAATAGAAATTCCTCCCATAACTCCAGATCCTCTTCCTCATCAGATACCAGTGAATGTTACACAGACTCAGGAAGAAAAAGAAA ACGGAAAGGTTTAAAGGGATTTCAACAATGAAATTTCTACATTTTCTAAACAGCTCATCACAAACTACTTTTTCATAGTTATCAAAATTA |
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FusionGenePPI for MRPL27_EFCAB3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| MRPL27 | UBC, ICT1, APP, FHL3, RPL13, ZNF22, MRPL28, RPL6, RPS8, MRPL4, HNRNPA1, MRPL39, MRPL37, MRPS30, MRPL47, CDK2, HNRNPU, KIF11, MRPL50, THOC2, MRPL9, FOXB1, MRPL10, MRPL42, MRPL41, MRPL35, ZNF274, PDGFB, MRPL12, KBTBD7, RPL7, RPL18 | EFCAB3 | EGFR |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MRPL27_EFCAB3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MRPL27_EFCAB3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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