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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 22147

FusionGeneSummary for MLLT10_LRCH3

check button Fusion gene summary
Fusion gene informationFusion gene name: MLLT10_LRCH3
Fusion gene ID: 22147
HgeneTgene
Gene symbol

MLLT10

LRCH3

Gene ID

8028

84859

Gene nameMLLT10, histone lysine methyltransferase DOT1L cofactorleucine rich repeats and calponin homology domain containing 3
SynonymsAF10-
Cytomap

10p12.31

3q29

Type of geneprotein-codingprotein-coding
Descriptionprotein AF-10ALL1-fused gene from chromosome 10 proteinmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10type I AF10 proteintype III AF10 protleucine-rich repeat and calponin homology domain-containing protein 3leucine-rich repeats and calponin homology (CH) domain containing 3
Modification date2018052220180523
UniProtAcc

P55197

Q96II8

Ensembl transtripts involved in fusion geneENST00000446906, ENST00000377072, 
ENST00000307729, ENST00000377059, 
ENST00000495130, ENST00000377100, 
ENST00000377091, 
ENST00000438796, 
ENST00000414675, ENST00000441090, 
ENST00000334859, ENST00000425562, 
ENST00000493726, ENST00000536618, 
Fusion gene scores* DoF score13 X 10 X 8=10406 X 7 X 3=126
# samples 208
** MAII scorelog2(20/1040*10)=-2.37851162325373
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/126*10)=-0.655351828612554
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: MLLT10 [Title/Abstract] AND LRCH3 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMLLT10

GO:0045944

positive regulation of transcription by RNA polymerase II

17868029


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BG999468MLLT10chr10

22021972

+LRCH3chr3

197582583

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000446906ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000446906ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000446906ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000446906ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000446906ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000446906ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000446906ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377072ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000307729ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
5CDS-intronENST00000377059ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000495130ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377100ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000438796MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000414675MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000441090MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000334859MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000425562MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000493726MLLT10chr10

22021972

+LRCH3chr3

197582583

+
intron-intronENST00000377091ENST00000536618MLLT10chr10

22021972

+LRCH3chr3

197582583

+

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FusionProtFeatures for MLLT10_LRCH3


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MLLT10

P55197

LRCH3

Q96II8

Probably involved in transcriptional regulation. Invitro or as fusion protein with KMT2A/MLL1 has transactivationactivity. Binds to cruciform DNA. In cells, binding to unmodifiedhistone H3 regulates DOT1L functions including histone H3 'Lys-79'dimethylation (H3K79me2) and gene activation (PubMed:26439302).{ECO:0000269|PubMed:17868029, ECO:0000269|PubMed:26439302}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for MLLT10_LRCH3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for MLLT10_LRCH3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MLLT10_LRCH3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MLLT10_LRCH3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneMLLT10C0007134Renal Cell Carcinoma1CTD_human
HgeneMLLT10C0025202melanoma1CTD_human
HgeneMLLT10C0025286Meningioma1CTD_human