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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 21713

FusionGeneSummary for METTL25_PTPRQ

check button Fusion gene summary
Fusion gene informationFusion gene name: METTL25_PTPRQ
Fusion gene ID: 21713
HgeneTgene
Gene symbol

METTL25

PTPRQ

Gene ID

84190

374462

Gene namemethyltransferase like 25protein tyrosine phosphatase, receptor type Q
SynonymsC12orf26DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q
Cytomap

12q21.31

12q21.31

Type of geneprotein-codingprotein-coding
Descriptionmethyltransferase-like protein 25phosphatidylinositol phosphatase PTPRQphosphotidylinositol phosphatase PTPRQprotein-tyrosine phosphatase, receptor-type, expressed by glomerular mesangial cells
Modification date2018051920180519
UniProtAcc

Q8N6Q8

Q9UMZ3

Ensembl transtripts involved in fusion geneENST00000248306, ENST00000547357, 
ENST00000266688, ENST00000547485, 
Fusion gene scores* DoF score5 X 4 X 1=208 X 6 X 4=192
# samples 56
** MAII scorelog2(5/20*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(6/192*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: METTL25 [Title/Abstract] AND PTPRQ [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePTPRQ

GO:0045598

regulation of fat cell differentiation

19351528


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSARCTCGA-DX-AB35-01AMETTL25chr12

82796909

+PTPRQchr12

81025971

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000248306ENST00000266688METTL25chr12

82796909

+PTPRQchr12

81025971

+
5CDS-intronENST00000248306ENST00000547485METTL25chr12

82796909

+PTPRQchr12

81025971

+
3UTR-3CDSENST00000547357ENST00000266688METTL25chr12

82796909

+PTPRQchr12

81025971

+
3UTR-intronENST00000547357ENST00000547485METTL25chr12

82796909

+PTPRQchr12

81025971

+

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FusionProtFeatures for METTL25_PTPRQ


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
METTL25

Q8N6Q8

PTPRQ

Q9UMZ3

Putative methyltransferase. {ECO:0000250}. Phosphatidylinositol phosphatase required for auditoryfunction. May act by regulating the level of phosphatidylinositol4,5-bisphosphate (PIP2) level in the basal region of hair bundles.Can dephosphorylate a broad range of phosphatidylinositolphosphates, including phosphatidylinositol 3,4,5-trisphosphate andmost phosphatidylinositol monophosphates and diphosphates.Phosphate can be hydrolyzed from the D3 and D5 positions in theinositol ring. Has low tyrosine-protein phosphatase activity;however, the relevance of such activity in vivo is unclear. Playsan important role in adipogenesis of mesenchymal stem cells(MSCs). Regulates the phosphorylation state of AKT1 by suppressingthe phosphatidylinositol 3,4,5-trisphosphate (PIP3) level in MSCsand preadipocyte cells. {ECO:0000269|PubMed:19351528}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37502036_229218912296DomainTyrosine-protein phosphatase
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501969_233218912296Topological domainCytoplasmic
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501948_196818912296TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750100_19518912296DomainFibronectin type-III 2
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501098_119018912296DomainFibronectin type-III 12
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501192_128218912296DomainFibronectin type-III 13
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501287_138018912296DomainFibronectin type-III 14
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501384_147018912296DomainFibronectin type-III 15
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501474_157818912296DomainFibronectin type-III 16
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501583_168118912296DomainFibronectin type-III 17
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+37501686_178718912296DomainFibronectin type-III 18
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750199_29418912296DomainFibronectin type-III 3
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750350_43818912296DomainFibronectin type-III 4
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+375036_9918912296DomainFibronectin type-III 1
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750441_53918912296DomainFibronectin type-III 5
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750514_60618912296DomainFibronectin type-III 6
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750610_70518912296DomainFibronectin type-III 7
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750710_79918912296DomainFibronectin type-III 8
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750804_89418912296DomainFibronectin type-III 9
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750899_98818912296DomainFibronectin type-III 10
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+3750993_109318912296DomainFibronectin type-III 11
TgenePTPRQchr12:82796909chr12:81025971ENST00000266688+375036_194718912296Topological domainExtracellular


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FusionGeneSequence for METTL25_PTPRQ


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_METTL25_ENST00000248306_chr12_82796909_+_PTPRQ_ENST00000266688_chr12_81025971_+_831aa
MAASCPLPVTPDLPTLRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLAALRKSASETEALPSETRPLVEAEWEAGMTD
FPKIFCETSQKLVSVEAFALAAKYYSVQNLGICTPFEQLLVALRGNQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQVID
LGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLALKMAKERKVQNKVKNKADTEEVFNNSPTNQE
KMPTSAILPDFSGSVISNIRNQMETLHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNIYSPLT
SFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEEFENQHKGEGLSERTVEIILSVTLCILSIIL
LGTAIFAFARIRQKQKEGGTYSPQDAEIIDTKLKLDQLITVADLELKDERLTRLLSYRKSIKPISKKSFLQHVEELCTNNNLKFQEEFSE
LPKFLQDLSSTDADLPWNRAKNRFPNIKPYNNNRVKLIADASVPGSDYINASYISGYLCPNEFIATQGPLPGTVGDFWRMVWETRAKTLV
MLTQCFEKGRIRCHQYWPEDNKPVTVFGDIVITKLMEDVQIDWTIRDLKIERHGDCMTVRQCNFTAWPEHGVPENSAPLIHFVKLVRASR
AHDTTPMIVHCSAGVGRTGVFIALDHLTQHINDHDFVDIYGLVAELRSERMCMVQNLAQYIFLHQCILDLLSNKGSNQPICFVNYSALQK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_METTL25_ENST00000248306_chr12_82796909_+_PTPRQ_ENST00000266688_chr12_81025971_+_2493nt
ATGGCGGCTTCTTGCCCTCTCCCGGTGACCCCGGACCTGCCCACGCTGCGTGCCAAGTTGCAGGGACTGCTGCAGTTCCTGAGGGATGCC
CTGTCCATTTCCAATGCACATACCGTGGATTTCTACACAGAATCCGTGTGGGAGGAGCTGGTCGACTTGCCACCGGAGACAGTGCTGGCT
GCGCTGAGGAAGTCAGCGTCGGAGACGGAGGCCCTGCCCTCAGAGACGCGCCCCCTAGTGGAAGCAGAGTGGGAAGCAGGTATGACTGAT
TTTCCCAAAATATTTTGTGAAACTTCTCAGAAGTTGGTGAGTGTGGAAGCCTTTGCTCTGGCTGCGAAATACTATTCTGTACAAAACTTG
GGAATATGTACTCCTTTTGAACAGTTGCTTGTAGCCCTTCGAGGAAATCAAAACCAGAGAATTGGTGAAAATCAGAAGGCAGTTGAGTTT
ATGAATATGAAGAAATCTCATGAAGTTCAGGCAATGTCAGAGCTGATCAGCAGTATTGCTGACTACTATGGAATAAAGCAGGTGATTGAC
TTGGGTTCCGGTAAAGGCTACCTAAGCTCTTTTTTGTCCTTGAAGTATGGCTTAAAAGTTTATGGAATTGATTCTTCAAATACCAATACT
CATGGAGCTGAGGAGAGAAACAGAAAATTGAAGAAACATTGGAAACTCTGTCATGCTCAGTCAAGATTAGATGTCAATGGACTAGCATTA
AAAATGGCAAAAGAAAGGAAAGTGCAAAATAAAGTTAAAAATAAAGCTGATACTGAGGAAGTGTTTAACAACAGTCCTACAAATCAAGAA
AAGATGCCTACCTCAGCTATTTTGCCTGATTTTTCTGGCTCTGTAATTTCTAATATCAGAAACCAAATGGAAACCCTTCATTCTCAGCCA
CATCAAGAAGAAAATTTGTGTTTTGAAAATTCCTTTTCTCTTATAAACCTTTTGCCTATTAATGCTGTAGAGCCTACTTCTTCACAGCAA
ATACCCAACAGAGAAACATCTGAAGCCAATAAAGAGAGAAGAAAAATGACATCAAAGTCAAGTGAATCAAATATATATTCACCTTTAACC
TCTTTTATCACTGCTGATTCAGAACTCCATGACATTATTAAAGATTTGGAGGATTGTTTGATGGTGGGTCTCCACACTTGTGGTGATCTG
GCTCCAAATACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGTTTGCAGTGTGGGTTGTTGCTACCACCTCTTATCTGAAGAA
TTTGAAAACCAGCATAAAGGGGAAGGACTTTCAGAAAGAACCGTAGAGATCATTCTTTCCGTCACTTTGTGTATCCTTTCAATAATTCTC
CTTGGAACAGCTATTTTTGCATTTGCAAGAATTCGACAGAAGCAGAAAGAAGGTGGCACATACTCTCCTCAGGATGCAGAAATTATTGAC
ACTAAATTGAAGCTGGATCAGCTCATCACAGTGGCAGACCTGGAACTGAAGGACGAGAGATTAACGCGGTTACTTAGTTATAGAAAATCC
ATCAAGCCAATAAGCAAGAAATCCTTCCTGCAACATGTTGAAGAGCTTTGCACAAACAACAACCTAAAGTTTCAAGAAGAATTTTCGGAA
TTACCAAAATTTCTTCAGGATCTTTCTTCAACTGATGCTGATCTGCCTTGGAATAGAGCAAAAAACCGCTTCCCAAACATAAAACCATAT
AATAATAACAGAGTAAAGCTGATAGCTGACGCTAGTGTTCCAGGTTCGGATTATATTAATGCCAGCTATATTTCTGGTTATTTATGTCCA
AATGAATTTATTGCTACTCAAGGTCCACTACCAGGAACAGTTGGAGATTTTTGGAGAATGGTGTGGGAAACCAGAGCAAAAACATTAGTA
ATGCTAACACAGTGTTTTGAAAAAGGACGGATCAGATGCCATCAGTATTGGCCAGAGGACAACAAGCCAGTTACTGTCTTTGGAGATATA
GTGATTACAAAGCTAATGGAGGATGTTCAAATAGATTGGACTATCAGGGATCTGAAAATTGAAAGGCATGGGGATTGCATGACTGTTCGA
CAGTGTAACTTTACTGCCTGGCCAGAGCATGGGGTTCCTGAGAACAGCGCCCCTCTAATTCACTTTGTGAAGTTGGTTCGAGCAAGCAGG
GCACATGACACCACACCTATGATTGTTCACTGCAGTGCTGGAGTTGGAAGAACTGGAGTTTTTATTGCTCTGGACCATTTAACACAACAT
ATAAATGACCATGATTTTGTGGATATATATGGACTAGTAGCTGAACTGAGAAGTGAAAGAATGTGCATGGTGCAGAATCTGGCACAGTAT
ATCTTTTTACACCAGTGCATTCTGGATCTCTTATCAAATAAGGGAAGTAATCAGCCCATCTGTTTTGTTAACTATTCAGCACTTCAGAAG


* Fusion transcript sequences (Full-length transcript).
>In-frame_METTL25_ENST00000248306_chr12_82796909_+_PTPRQ_ENST00000266688_chr12_81025971_+_2562nt
GCTAATTTGGGCCGAGCTGGCGCCTCACGGCCATGTTTGCGCCACCTACAGCCTCGGAGGGTGAGCGTCATGGCGGCTTCTTGCCCTCTC
CCGGTGACCCCGGACCTGCCCACGCTGCGTGCCAAGTTGCAGGGACTGCTGCAGTTCCTGAGGGATGCCCTGTCCATTTCCAATGCACAT
ACCGTGGATTTCTACACAGAATCCGTGTGGGAGGAGCTGGTCGACTTGCCACCGGAGACAGTGCTGGCTGCGCTGAGGAAGTCAGCGTCG
GAGACGGAGGCCCTGCCCTCAGAGACGCGCCCCCTAGTGGAAGCAGAGTGGGAAGCAGGTATGACTGATTTTCCCAAAATATTTTGTGAA
ACTTCTCAGAAGTTGGTGAGTGTGGAAGCCTTTGCTCTGGCTGCGAAATACTATTCTGTACAAAACTTGGGAATATGTACTCCTTTTGAA
CAGTTGCTTGTAGCCCTTCGAGGAAATCAAAACCAGAGAATTGGTGAAAATCAGAAGGCAGTTGAGTTTATGAATATGAAGAAATCTCAT
GAAGTTCAGGCAATGTCAGAGCTGATCAGCAGTATTGCTGACTACTATGGAATAAAGCAGGTGATTGACTTGGGTTCCGGTAAAGGCTAC
CTAAGCTCTTTTTTGTCCTTGAAGTATGGCTTAAAAGTTTATGGAATTGATTCTTCAAATACCAATACTCATGGAGCTGAGGAGAGAAAC
AGAAAATTGAAGAAACATTGGAAACTCTGTCATGCTCAGTCAAGATTAGATGTCAATGGACTAGCATTAAAAATGGCAAAAGAAAGGAAA
GTGCAAAATAAAGTTAAAAATAAAGCTGATACTGAGGAAGTGTTTAACAACAGTCCTACAAATCAAGAAAAGATGCCTACCTCAGCTATT
TTGCCTGATTTTTCTGGCTCTGTAATTTCTAATATCAGAAACCAAATGGAAACCCTTCATTCTCAGCCACATCAAGAAGAAAATTTGTGT
TTTGAAAATTCCTTTTCTCTTATAAACCTTTTGCCTATTAATGCTGTAGAGCCTACTTCTTCACAGCAAATACCCAACAGAGAAACATCT
GAAGCCAATAAAGAGAGAAGAAAAATGACATCAAAGTCAAGTGAATCAAATATATATTCACCTTTAACCTCTTTTATCACTGCTGATTCA
GAACTCCATGACATTATTAAAGATTTGGAGGATTGTTTGATGGTGGGTCTCCACACTTGTGGTGATCTGGCTCCAAATACTTTGCGAATA
TTTACCTCCAACTCTGAAATCAAGGGAGTTTGCAGTGTGGGTTGTTGCTACCACCTCTTATCTGAAGAATTTGAAAACCAGCATAAAGGG
GAAGGACTTTCAGAAAGAACCGTAGAGATCATTCTTTCCGTCACTTTGTGTATCCTTTCAATAATTCTCCTTGGAACAGCTATTTTTGCA
TTTGCAAGAATTCGACAGAAGCAGAAAGAAGGTGGCACATACTCTCCTCAGGATGCAGAAATTATTGACACTAAATTGAAGCTGGATCAG
CTCATCACAGTGGCAGACCTGGAACTGAAGGACGAGAGATTAACGCGGTTACTTAGTTATAGAAAATCCATCAAGCCAATAAGCAAGAAA
TCCTTCCTGCAACATGTTGAAGAGCTTTGCACAAACAACAACCTAAAGTTTCAAGAAGAATTTTCGGAATTACCAAAATTTCTTCAGGAT
CTTTCTTCAACTGATGCTGATCTGCCTTGGAATAGAGCAAAAAACCGCTTCCCAAACATAAAACCATATAATAATAACAGAGTAAAGCTG
ATAGCTGACGCTAGTGTTCCAGGTTCGGATTATATTAATGCCAGCTATATTTCTGGTTATTTATGTCCAAATGAATTTATTGCTACTCAA
GGTCCACTACCAGGAACAGTTGGAGATTTTTGGAGAATGGTGTGGGAAACCAGAGCAAAAACATTAGTAATGCTAACACAGTGTTTTGAA
AAAGGACGGATCAGATGCCATCAGTATTGGCCAGAGGACAACAAGCCAGTTACTGTCTTTGGAGATATAGTGATTACAAAGCTAATGGAG
GATGTTCAAATAGATTGGACTATCAGGGATCTGAAAATTGAAAGGCATGGGGATTGCATGACTGTTCGACAGTGTAACTTTACTGCCTGG
CCAGAGCATGGGGTTCCTGAGAACAGCGCCCCTCTAATTCACTTTGTGAAGTTGGTTCGAGCAAGCAGGGCACATGACACCACACCTATG
ATTGTTCACTGCAGTGCTGGAGTTGGAAGAACTGGAGTTTTTATTGCTCTGGACCATTTAACACAACATATAAATGACCATGATTTTGTG
GATATATATGGACTAGTAGCTGAACTGAGAAGTGAAAGAATGTGCATGGTGCAGAATCTGGCACAGTATATCTTTTTACACCAGTGCATT
CTGGATCTCTTATCAAATAAGGGAAGTAATCAGCCCATCTGTTTTGTTAACTATTCAGCACTTCAGAAGATGGACTCTTTGGACGCCATG


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FusionGenePPI for METTL25_PTPRQ


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
METTL25APP, HTR3C, NRD1, PCBP3, RPGRIP1PTPRQEEA1, PIBF1, SNX27, SLC9A3R1, AHI1, ATP2B2, SLC9A3R2, EZR


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for METTL25_PTPRQ


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for METTL25_PTPRQ


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgenePTPRQC3150654DEAFNESS, AUTOSOMAL RECESSIVE 84A1CTD_human;UNIPROT