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Fusion gene ID: 20919 |
FusionGeneSummary for MAP4_CCDC85B |
Fusion gene summary |
Fusion gene information | Fusion gene name: MAP4_CCDC85B | Fusion gene ID: 20919 | Hgene | Tgene | Gene symbol | MAP4 | CCDC85B | Gene ID | 4134 | 11007 |
Gene name | microtubule associated protein 4 | coiled-coil domain containing 85B | |
Synonyms | - | DIPA | |
Cytomap | 3p21.31 | 11q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | microtubule-associated protein 4MAP-4 | coiled-coil domain-containing protein 85Bdelta-interacting protein Ahepatitis delta antigen-interacting protein A | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | P27816 | Q15834 | |
Ensembl transtripts involved in fusion gene | ENST00000383737, ENST00000395734, ENST00000426837, ENST00000360240, ENST00000439356, ENST00000264724, ENST00000420772, ENST00000441748, ENST00000462206, ENST00000434267, | ENST00000312579, | |
Fusion gene scores | * DoF score | 23 X 16 X 14=5152 | 1 X 1 X 1=1 |
# samples | 31 | 1 | |
** MAII score | log2(31/5152*10)=-4.05479247284038 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: MAP4 [Title/Abstract] AND CCDC85B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CCDC85B | GO:0030308 | negative regulation of cell growth | 17873903 |
Tgene | CCDC85B | GO:0045892 | negative regulation of transcription, DNA-templated | 17014843 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-24-1467-01A | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000383737 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
Frame-shift | ENST00000395734 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
Frame-shift | ENST00000426837 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
Frame-shift | ENST00000360240 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
Frame-shift | ENST00000439356 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
intron-3CDS | ENST00000264724 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
intron-3CDS | ENST00000420772 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
intron-3CDS | ENST00000441748 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
intron-3CDS | ENST00000462206 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
In-frame | ENST00000434267 | ENST00000312579 | MAP4 | chr3 | 48040128 | - | CCDC85B | chr11 | 65658328 | + |
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FusionProtFeatures for MAP4_CCDC85B |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
MAP4 | CCDC85B |
Non-neuronal microtubule-associated protein. Promotesmicrotubule assembly. {ECO:0000269|PubMed:10791892}. | Functions as a transcriptional repressor(PubMed:17014843). May inhibit the activity of CTNNB1 in a TP53-dependent manner and thus regulate cell growth (PubMed:17873903).May function in adipocyte differentiation, negatively regulatingmitotic clonal expansion (By similarity).{ECO:0000250|UniProtKB:Q6PDY0, ECO:0000269|PubMed:17014843,ECO:0000269|PubMed:17873903}. (Microbial infection) Plays a role in hepatitis deltavirus (HDV) genomic replication. {ECO:0000269|PubMed:8810253}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MAP4_CCDC85B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_MAP4_ENST00000434267_chr3_48040128_-_CCDC85B_ENST00000312579_chr11_65658328_+_155aa MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETSQIEEALLPPRRRPPGLLPE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_MAP4_ENST00000434267_chr3_48040128_-_CCDC85B_ENST00000312579_chr11_65658328_+_465nt ATGGCTGACCTCAGTCTTGCAGATGCATTAACAGAACCATCTCCAGACATTGAGGGAGAGATAAAGCGGGACTTCATTGCCACACTAGAG GCAGAGGCCTTTGATGATGTTGTGGGAGAAACTGTTGGAAAAACAGACTATATTCCTCTCCTGGATGTTGATGAGAAAACCGGGAACTCA GAGTCAAAGAAGAAACCGTGCTCAGAAACTAGCCAGATTGAAGAGGCACTGCTTCCTCCACGCCGACGCCCGCCCGGATTGCTCCCCGAG CCCCGGGACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAA GAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGGGGACTGAAGGCTGGAGCGGAGGGACTTGCTGGGGGTTGGATTGGGGGTAATAAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_MAP4_ENST00000434267_chr3_48040128_-_CCDC85B_ENST00000312579_chr11_65658328_+_1098nt GGACAGAAATGTTGAAGGCAGGTGCCTGATCCAAAATGCATTTAGTCAGGACTGAACACAAGCTGCCTGGATAGTTCCTGCAGTTGCAGT GGTGCAGAATGGCTGACCTCAGTCTTGCAGATGCATTAACAGAACCATCTCCAGACATTGAGGGAGAGATAAAGCGGGACTTCATTGCCA CACTAGAGGCAGAGGCCTTTGATGATGTTGTGGGAGAAACTGTTGGAAAAACAGACTATATTCCTCTCCTGGATGTTGATGAGAAAACCG GGAACTCAGAGTCAAAGAAGAAACCGTGCTCAGAAACTAGCCAGATTGAAGGCGGCGCCTGCGGCGGGAGGAGGCGGCGCGCCTGGCGGC ACTGGTGCAGCGCGGCCGCCTCATGCAGGAGGTGAATCGGCAGCTGCAGGGCCACCTGGGCGAGATCCGCGAGCTCAAGCAGCTCAACCG GCGTCTGCAGGCAGAGAACCGTGAGCTGCGCGACCTCTGCTGCTTCCTGGACTCGGAGCGCCAGCGCGGGCGGCGCGCCGCACGCCAGTG GCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGCGAGGACCTGGGCGGCTGTTGGCAGAAGCTGGCCGAGCTGGAGGGCCGCCAGGA GGAGCTGCTGCGGGAGAACCTAGCGCTTAAGGAGCTCTGCCTGGCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGG GGGATCAGGAGCCGGGCCAGCACCCGAGCTTGCCTTGCCCCCGTGCGGGCCCCGCGACCTAGGCGATGGAAGCTCCAGCACTGGCAGCGT GGGCAGTCCGGATCAGTTGCCCCTGGCCTGTTCCCCCGATGATTGAAGGCACTGCTTCCTCCACGCCGACGCCCGCCCGGATTGCTCCCC GAGCCCCGGGACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACAC CAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGGGGACTGAAGGCTGGAGCGGAGGGACTTGCTGGGGGTTGGATTGGGGGTAAT |
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FusionGenePPI for MAP4_CCDC85B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MAP4 | MARK4, ENO2, CDK1, FYCO1, NR1I3, RXRB, RXRG, GSK3B, HDGF, SIRT7, SH3KBP1, ISG15, TERF1, POT1, CUL4A, USP21, GRK5, EPS15, AP2M1, RPS20, UBC, TRAF3IP1, FN1, IL7R, ERBB2IP, SNTA1, BAG3, LDLR, TARDBP, HNRNPF, COG7, CSTF2, EIF2S1, HNRNPR, IARS, MTA2, POLR2A, POLR2C, PPP4R1, WDHD1, LSM8, PDCD6, RPA3, RPA2, RPA1, LGR4, CCDC8, ABCE1, FLNB, LSM3, HSPA5, LASP1, SERBP1, SLK, NTRK1, SRPK2, KIF11, CRY2, OTUB1, CDH1, EGFR, G3BP1, BRCA1, YAP1 | CCDC85B | FAM27E3, ZNF250, KANSL1, NEK6, PBXIP1, ZNF821, NIF3L1, CCNK, ZNF337, PLOD3, ALS2CR11, NGFRAP1, ZNF165, TCEANC, SMARCD1, TSPYL4, CFAP53, AKAP17A, TUBGCP4, TNNT1, KRT20, EPS8, PRPF3, COPS4, FBF1, THAP7, MEAF6, PSMC6, FXR2, ZNF417, CCDC112, BEX2, CHCHD3, SYT17, ZNF426, FAM214B, FAM208B, CCDC33, HNRNPC, LNX1, CWC25, CDK18, LZTS2, EZH2, IKZF5, TNNI1, CCDC185, RBM7, USP2, SETD5, FAM50B, KRT6A, SYTL4, MOAP1, ZNF205, SIX1, FASTKD5, RBM41, CCDC120, C10orf10, AKIRIN2, DTNB, KRT17, ZFP36, AGGF1, PKN1, MCM10, CCDC116, TCHP, TEAD4, CCDC67, FCHSD2, DOK5, LMO3, KIAA0408, MBIP, RIBC2, POLR2L, EXOC7, VPS72, MCRS1, KRT18, ZNF638, C19orf25, GCC1, RNF8, RALYL, SF3A3, TTC14, SCNM1, HMG20B, DUSP13, ZBTB5, NDUFA5, C1orf111, PSMA1, EXOC8, UTP14A, ENKD1, SLU7, CEP70, EIF3H, PSMF1, APEX2, CDKN1A, LDOC1, PLEKHF2, FAM13C, PSMC1, CARD9, FAM107A, ZC2HC1C, GPANK1, ZNF764, PRC1, C7orf50, MOB1A, PIDD1, ZBTB16, C20orf195, C21orf91, MOB4, C8orf48, NRIP1, ZFC3H1, FAM124B, AQP1, UTP6, NUP54, GFI1B, TTC25, ZNF564, FAM74A4, MAGEA4, PPP1CC, PPP1CA, CRYAB, RPL22L1, PPP1R13B, TP53BP2, PPP1R3A, RASSF9, SKA3, SSSCA1, CCDC136, TSKS, RGS6 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MAP4_CCDC85B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | MAP4 | P27816 | DB01248 | Docetaxel | Microtubule-associated protein 4 | small molecule | approved|investigational |
Hgene | MAP4 | P27816 | DB11638 | Artenimol | Microtubule-associated protein 4 | small molecule | approved|investigational |
Hgene | MAP4 | P27816 | DB01229 | Paclitaxel | Microtubule-associated protein 4 | small molecule | approved|vet_approved |
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RelatedDiseases for MAP4_CCDC85B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MAP4 | C0043094 | Weight Gain | 1 | CTD_human |