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Fusion gene ID: 2041 |
FusionGeneSummary for AP1M2_TMED1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: AP1M2_TMED1 | Fusion gene ID: 2041 | Hgene | Tgene | Gene symbol | AP1M2 | TMED1 | Gene ID | 10053 | 11018 |
| Gene name | adaptor related protein complex 1 subunit mu 2 | transmembrane p24 trafficking protein 1 | |
| Synonyms | AP1-mu2|HSMU1B|MU-1B|MU1B|mu2 | IL1RL1LG|Il1rl1l|Tp24|p24g1 | |
| Cytomap | 19p13.2 | 19p13.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | AP-1 complex subunit mu-2AP-mu chain family member mu1BHA1 47 kDa subunit 2adaptor protein complex AP-1 mu-2 subunitadaptor related protein complex 1 mu 2 subunitclathrin assembly protein complex 1 mu-2 medium chain 2clathrin coat assembly protein A | transmembrane emp24 domain-containing protein 1IL1RL1-binding proteininterleukin 1 receptor-like 1 ligandp24 family protein gamma-1putative T1/ST2 receptor-binding proteintransmembrane emp24 protein transport domain containing 1 | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q9Y6Q5 | Q13445 | |
| Ensembl transtripts involved in fusion gene | ENST00000590923, ENST00000250244, | ENST00000214869, ENST00000591695, ENST00000588289, | |
| Fusion gene scores | * DoF score | 5 X 6 X 3=90 | 2 X 2 X 2=8 |
| # samples | 6 | 2 | |
| ** MAII score | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: AP1M2 [Title/Abstract] AND TMED1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | OV | TCGA-29-1761-01A | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000590923 | ENST00000214869 | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
| Frame-shift | ENST00000590923 | ENST00000591695 | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
| Frame-shift | ENST00000590923 | ENST00000588289 | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
| Frame-shift | ENST00000250244 | ENST00000214869 | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
| Frame-shift | ENST00000250244 | ENST00000591695 | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
| Frame-shift | ENST00000250244 | ENST00000588289 | AP1M2 | chr19 | 10697866 | - | TMED1 | chr19 | 10943889 | - |
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FusionProtFeatures for AP1M2_TMED1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| AP1M2 | TMED1 |
| Subunit of clathrin-associated adaptor protein complex 1that plays a role in protein sorting in the trans-Golgi network(TGN) and endosomes. The AP complexes mediate the recruitment ofclathrin to membranes and the recognition of sorting signalswithin the cytosolic tails of transmembrane cargo molecules. | Potential role in vesicular protein trafficking, mainlyin the early secretory pathway. May act as a cargo receptor at thelumenal side for incorporation of secretory cargo molecules intotransport vesicles and may be involved in vesicle coat formationat the cytoplasmic side. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for AP1M2_TMED1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for AP1M2_TMED1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| AP1M2 | AP2B1, EHD2, LDLR, AP1G1, PVR, SCNN1G, EPN1, SCNN1A, SCNN1B, NDRG1, APP, ECSIT, MAST1, A2M, BLMH, LOXL4, RAB3A, RAB3D, PSEN1, EGFR, AP1S2, AP1S1, AP1S3, AP1G2, AP1B1, TMF1, HEATR5B, HECTD1, RIPK1, NECAP1, MON1A, ERBB3, TFAP2A, AFTPH | TMED1 | IL1RL1, SMAD3, TMED9, SEC23B, UBL4A, TMED10, CHST8, VAPA, JUN, SPPL2B, TMED2, FGF3, CDK5RAP3, JPH4, TPTE, IQCB1, EXOC1, EXOC3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for AP1M2_TMED1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AP1M2_TMED1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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